Strain Fitness in Sphingobium sp. HT1-2 around GFF2792

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,825,502	-		GFF2791	0.56	-0.1
2,825,511	+		GFF2791	0.56	-2.9
2,825,517	+		GFF2791	0.57	-2.1
2,825,517	+		GFF2791	0.57	-0.5
2,825,517	+		GFF2791	0.57	-1.5
2,825,519	-		GFF2791	0.57	-0.3
2,825,519	-		GFF2791	0.57	-1.5
2,825,542	+		GFF2791	0.58	-0.3
2,825,572	+		GFF2791	0.59	-1.6
2,825,575	+		GFF2791	0.59	-0.9
2,825,575	+		GFF2791	0.59	-1.3
2,825,575	+		GFF2791	0.59	-0.6
2,825,575	+		GFF2791	0.59	-0.4
2,825,583	-		GFF2791	0.59	-0.6
2,825,603	-		GFF2791	0.60	+0.8
2,825,608	-		GFF2791	0.61	-1.5
2,825,621	+		GFF2791	0.61	+0.4
2,825,621	+		GFF2791	0.61	-0.7
2,825,621	+		GFF2791	0.61	-0.9
2,825,626	+		GFF2791	0.61	+1.1
2,825,626	+		GFF2791	0.61	-0.4
2,825,627	-		GFF2791	0.61	-1.7
2,825,629	-		GFF2791	0.62	-1.4
2,825,629	-		GFF2791	0.62	+0.1
2,825,631	+		GFF2791	0.62	-1.2
2,825,631	+		GFF2791	0.62	+0.1
2,825,631	+		GFF2791	0.62	+0.8
2,825,631	+		GFF2791	0.62	-0.8
2,825,631	+		GFF2791	0.62	-0.9
2,825,634	-		GFF2791	0.62	-1.5
2,825,635	+		GFF2791	0.62	-0.5
2,825,639	-		GFF2791	0.62	-1.5
2,825,639	-		GFF2791	0.62	-1.6
2,825,639	-		GFF2791	0.62	-0.9
2,825,665	-		GFF2791	0.63	-1.7
2,825,665	-		GFF2791	0.63	-0.5
2,825,742	+		GFF2791	0.67	+0.8
2,825,742	+		GFF2791	0.67	-1.2
2,825,767	-		GFF2791	0.68	-1.6
2,825,767	-		GFF2791	0.68	+0.5
2,825,776	+		GFF2791	0.68	-0.4
2,825,781	+		GFF2791	0.68	-1.4
2,825,784	-		GFF2791	0.68	-1.0
2,825,785	+		GFF2791	0.68	-0.9
2,825,785	+		GFF2791	0.68	-2.1
2,825,785	+		GFF2791	0.68	-1.0
2,825,824	-		GFF2791	0.70	-1.9
2,825,826	+		GFF2791	0.70	-2.7
2,825,845	-		GFF2791	0.71	-0.1
2,825,866	+		GFF2791	0.72	-0.6
2,825,883	+		GFF2791	0.73	-1.9
2,825,883	-		GFF2791	0.73	-2.1
2,825,884	-		GFF2791	0.73	-2.2
2,825,887	+		GFF2791	0.73	+2.0
2,825,890	-		GFF2791	0.73	-0.4
2,825,912	+		GFF2791	0.74	+0.7
2,825,924	-		GFF2791	0.75	-1.4
2,825,926	+		GFF2791	0.75	-1.1
2,825,934	-		GFF2791	0.75	+0.2
2,825,934	-		GFF2791	0.75	-0.6
2,825,947	+		GFF2791	0.76	+0.3
2,825,958	+		GFF2791	0.76	-1.3
2,825,966	-		GFF2791	0.76	-0.7
2,825,966	-		GFF2791	0.76	-1.3
2,826,003	+		GFF2791	0.78	+0.3
2,826,011	-		GFF2791	0.78	+0.4
2,826,028	+		GFF2791	0.79	-1.7
2,826,029	+		GFF2791	0.79	-0.1
2,826,029	+		GFF2791	0.79	-1.8
2,826,030	-		GFF2791	0.79	+0.5
2,826,037	-		GFF2791	0.80	+0.2
2,826,037	-		GFF2791	0.80	-2.4
2,826,044	+		GFF2791	0.80	+1.0
2,826,046	+		GFF2791	0.80	-1.2
2,826,052	-		GFF2791	0.80	-1.3
2,826,052	-		GFF2791	0.80	-1.6
2,826,054	-		GFF2791	0.80	-2.3
2,826,062	-		GFF2791	0.81	-0.3
2,826,084	+		GFF2791	0.82	-1.9
2,826,103	-		GFF2791	0.83	+0.1
2,826,149	+		GFF2791	0.85	-0.4
2,826,149	+		GFF2791	0.85	-1.3
2,826,157	-		GFF2791	0.85	-0.4
2,826,157	-		GFF2791	0.85	+1.0
2,826,158	-		GFF2791	0.85	-0.4
2,826,159	+		GFF2791	0.85	-2.0
2,826,166	+		GFF2791	0.85	-1.2
2,826,174	-		GFF2791	0.86	-1.0
2,826,176	+		GFF2791	0.86	-0.6
2,826,184	-		GFF2791	0.86	-1.7
2,826,184	-		GFF2791	0.86	-2.1
2,826,219	+		GFF2791	0.88	+0.5
2,826,221	+		GFF2791	0.88	+0.5
2,826,240	+		GFF2791	0.89	-0.2
2,826,241	+		GFF2791	0.89	-1.1
2,826,241	+		GFF2791	0.89	-2.1
2,826,247	+		GFF2791	0.89	-1.2
2,826,249	-		GFF2791	0.89	+0.2
2,826,257	+		GFF2791	0.89	-0.3
2,826,262	+		GFF2791	0.90	-1.1
2,826,262	+		GFF2791	0.90	+1.1
2,826,262	+		GFF2791	0.90	-1.3
2,826,262	+		GFF2791	0.90	+0.5
2,826,270	-				-0.3
2,826,270	-				-0.4
2,826,270	-				-0.3
2,826,270	-				-1.2
2,826,270	-				-0.7
2,826,270	-				+0.4
2,826,275	-				-1.6
2,826,280	-				+0.1
2,826,290	-				+0.6
2,826,297	+				-2.1
2,826,307	-				-1.2
2,826,328	-				-0.7
2,826,328	-				-0.6
2,826,328	-				-0.4
2,826,372	+				-2.3
2,826,386	+				+0.2
2,826,394	-				+0.1
2,826,396	+				-1.7
2,826,404	-				-1.0
2,826,409	+				-1.0
2,826,423	-				-0.7
2,826,436	+				-0.9
2,826,436	+				-0.9
2,826,442	-				-1.1
2,826,442	-				-1.6
2,826,444	-				-1.1
2,826,447	+				-1.7
2,826,448	+				-2.2
2,826,448	+				+0.4
2,826,450	+				-0.7
2,826,458	-				-1.1
2,826,465	+				-1.9
2,826,466	+				+0.3
2,826,478	+				-0.7
2,826,488	-				-1.2
2,826,490	+				-2.0
2,826,518	+				-0.5
2,826,518	+				-0.8
2,826,518	+				+1.2
2,826,526	-				-0.4
2,826,543	-				+2.0
2,826,560	+				-1.6
2,826,560	-				+1.0
2,826,566	-				-0.6
2,826,566	-				-1.1
2,826,568	-				-1.7
2,826,593	+				-2.0
2,826,620	-		GFF2792	0.11	-0.6
2,826,622	+		GFF2792	0.11	-1.9
2,826,622	+		GFF2792	0.11	-0.8
2,826,622	+		GFF2792	0.11	-1.8
2,826,622	+		GFF2792	0.11	-1.4
2,826,622	+		GFF2792	0.11	-0.2
2,826,622	+		GFF2792	0.11	-3.1
2,826,630	-		GFF2792	0.12	+1.0
2,826,630	-		GFF2792	0.12	-1.2
2,826,646	-		GFF2792	0.13	-0.6
2,826,650	+		GFF2792	0.14	+0.1
2,826,650	+		GFF2792	0.14	-0.9
2,826,677	+		GFF2792	0.16	-0.5
2,826,686	+		GFF2792	0.17	-0.2
2,826,686	+		GFF2792	0.17	-0.7
2,826,694	+		GFF2792	0.18	-1.7
2,826,694	+		GFF2792	0.18	-1.1
2,826,694	+		GFF2792	0.18	+0.4
2,826,694	-		GFF2792	0.18	-1.7
2,826,694	-		GFF2792	0.18	+0.3
2,826,699	+		GFF2792	0.18	-1.5
2,826,702	-		GFF2792	0.18	-2.4
2,826,702	-		GFF2792	0.18	-1.3
2,826,702	-		GFF2792	0.18	-2.2
2,826,702	-		GFF2792	0.18	-2.1
2,826,704	+		GFF2792	0.18	-1.3
2,826,704	+		GFF2792	0.18	-0.2
2,826,707	-		GFF2792	0.19	-0.2
2,826,707	-		GFF2792	0.19	-0.7
2,826,712	-		GFF2792	0.19	+0.2
2,826,746	+		GFF2792	0.22	-1.4
2,826,782	+		GFF2792	0.25	-1.3
2,826,789	-		GFF2792	0.26	+0.5
2,826,790	-		GFF2792	0.26	-0.2
2,826,791	+		GFF2792	0.26	-0.5
2,826,819	-		GFF2792	0.28	-1.9
2,826,819	-		GFF2792	0.28	-1.6
2,826,821	+		GFF2792	0.29	-1.1
2,826,829	-		GFF2792	0.29	-0.7
2,826,829	-		GFF2792	0.29	-1.6
2,826,829	-		GFF2792	0.29	-1.4
2,826,840	+		GFF2792	0.30	+0.7
2,826,886	-		GFF2792	0.34	+0.1
2,826,931	+		GFF2792	0.38	-0.7
2,826,936	+		GFF2792	0.39	+0.5
2,826,936	+		GFF2792	0.39	-0.1
2,826,939	-		GFF2792	0.39	-1.2
2,826,939	-		GFF2792	0.39	+0.2
2,826,939	-		GFF2792	0.39	-0.8
2,826,939	-		GFF2792	0.39	-0.5
2,826,952	+		GFF2792	0.40	-2.8
2,827,025	+		GFF2792	0.46	-0.2
2,827,025	-		GFF2792	0.46	-0.9
2,827,028	-		GFF2792	0.47	-2.1
2,827,039	+		GFF2792	0.48	-0.5
2,827,041	+		GFF2792	0.48	-0.3
2,827,049	-		GFF2792	0.48	-0.1
2,827,049	-		GFF2792	0.48	-1.9
2,827,049	-		GFF2792	0.48	-1.2
2,827,049	-		GFF2792	0.48	-1.2
2,827,049	-		GFF2792	0.48	-1.2
2,827,108	+		GFF2792	0.54	-1.8
2,827,115	+		GFF2792	0.54	-0.9
2,827,147	+		GFF2792	0.57	+0.1
2,827,147	+		GFF2792	0.57	-0.6
2,827,179	+		GFF2792	0.60	-2.6
2,827,181	+		GFF2792	0.60	-1.6
2,827,189	-		GFF2792	0.61	-1.1
2,827,189	-		GFF2792	0.61	-0.9
2,827,197	-		GFF2792	0.61	-2.3
2,827,215	+		GFF2792	0.63	-2.1
2,827,215	+		GFF2792	0.63	-1.9
2,827,215	+		GFF2792	0.63	-1.4
2,827,215	+		GFF2792	0.63	-0.1
2,827,215	+		GFF2792	0.63	+0.3
2,827,215	+		GFF2792	0.63	+0.8
2,827,215	+		GFF2792	0.63	-0.5
2,827,215	+		GFF2792	0.63	-0.6
2,827,215	+		GFF2792	0.63	+0.7
2,827,223	-		GFF2792	0.64	-1.4
2,827,223	-		GFF2792	0.64	-0.6
2,827,223	-		GFF2792	0.64	-0.4
2,827,223	-		GFF2792	0.64	-2.1
2,827,223	-		GFF2792	0.64	+1.0
2,827,223	-		GFF2792	0.64	-1.1
2,827,223	-		GFF2792	0.64	-0.0
2,827,223	-		GFF2792	0.64	-0.8
2,827,241	-		GFF2792	0.65	-0.9
2,827,241	-		GFF2792	0.65	-0.1
2,827,252	+		GFF2792	0.66	-2.0
2,827,252	+		GFF2792	0.66	-1.7
2,827,262	+		GFF2792	0.67	-1.7
2,827,262	+		GFF2792	0.67	-1.6
2,827,262	+		GFF2792	0.67	-1.7
2,827,270	-		GFF2792	0.68	-2.1
2,827,315	+		GFF2792	0.72	-2.7
2,827,350	-		GFF2792	0.75	-1.5
2,827,351	-		GFF2792	0.75	-2.7
2,827,384	-		GFF2792	0.78	+0.3
2,827,394	+		GFF2792	0.78	-0.3
2,827,394	+		GFF2792	0.78	-0.1
2,827,394	+		GFF2792	0.78	-1.6
2,827,394	+		GFF2792	0.78	-2.3
2,827,394	+		GFF2792	0.78	+0.6
2,827,394	+		GFF2792	0.78	+1.3
2,827,394	+		GFF2792	0.78	-0.0
2,827,394	+		GFF2792	0.78	-1.1
2,827,394	+		GFF2792	0.78	-1.2
2,827,402	-		GFF2792	0.79	-0.9
2,827,402	-		GFF2792	0.79	-2.3
2,827,402	-		GFF2792	0.79	-1.1
2,827,402	-		GFF2792	0.79	-0.0
2,827,402	-		GFF2792	0.79	+0.3
2,827,402	-		GFF2792	0.79	-1.2
2,827,402	-		GFF2792	0.79	-0.5
2,827,402	-		GFF2792	0.79	-1.4
2,827,402	-		GFF2792	0.79	+0.2
2,827,410	+		GFF2792	0.80	-1.4
2,827,420	+		GFF2792	0.81	-0.3
2,827,433	+		GFF2792	0.82	+1.4
2,827,437	-		GFF2792	0.82	+0.1
2,827,441	+		GFF2792	0.82	+1.6
2,827,461	+		GFF2792	0.84	-1.5
2,827,466	+		GFF2792	0.85	-2.3
2,827,485	+		GFF2792	0.86	-2.7
2,827,485	+		GFF2792	0.86	+1.8
2,827,488	-		GFF2792	0.87	-0.1
2,827,493	-		GFF2792	0.87	-0.6
2,827,493	-		GFF2792	0.87	+0.7
2,827,498	+		GFF2792	0.87	-1.9
2,827,498	-		GFF2792	0.87	-0.7
2,827,512	-		GFF2792	0.89	+0.5
2,827,517	-		GFF2792	0.89	-1.6
2,827,517	-		GFF2792	0.89	-0.6
2,827,517	-		GFF2792	0.89	-2.5
2,827,524	+		GFF2792	0.90	+0.3
2,827,524	+		GFF2792	0.90	-1.0
2,827,542	+				-1.2
2,827,580	-				-2.1
2,827,598	-				-1.6
2,827,611	+				-2.0
2,827,612	+				-1.6
2,827,612	+				-1.1
2,827,612	+				+1.6
2,827,617	+				-0.6
2,827,619	+				+0.3
2,827,619	-				-0.8
2,827,620	-				-0.1
2,827,625	-				-2.5
2,827,625	-				-0.6
2,827,632	-				-2.2
2,827,679	-				-0.9
2,827,699	+				-1.0
2,827,699	+				-0.0
2,827,704	+				+0.1
2,827,737	+				-2.1
2,827,745	-				-0.1
2,827,745	-				-2.6
2,827,767	-				-1.9
2,827,782	+				-0.6
2,827,786	-				+1.8
2,827,806	-				-0.5
2,827,807	+				+0.5
2,827,815	-				+0.6
2,827,815	-				-0.2
2,827,825	-		GFF2793	0.11	-1.4
2,827,830	+		GFF2793	0.11	-0.8
2,827,830	+		GFF2793	0.11	-0.6
2,827,837	+		GFF2793	0.12	+1.0
2,827,838	-		GFF2793	0.12	-1.0
2,827,838	-		GFF2793	0.12	+0.6
2,827,838	-		GFF2793	0.12	-1.3
2,827,838	-		GFF2793	0.12	-0.9
2,827,838	-		GFF2793	0.12	-0.4
2,827,838	-		GFF2793	0.12	+0.5
2,827,838	-		GFF2793	0.12	+0.1
2,827,838	-		GFF2793	0.12	-0.3
2,827,838	-		GFF2793	0.12	+0.1
2,827,838	-		GFF2793	0.12	-0.7
2,827,838	-		GFF2793	0.12	-1.0
2,827,839	+		GFF2793	0.12	-1.2
2,827,847	-		GFF2793	0.12	+0.9
2,827,848	-		GFF2793	0.13	+0.1
2,827,850	-		GFF2793	0.13	-1.2
2,827,852	+		GFF2793	0.13	-0.3
2,827,860	-		GFF2793	0.13	+0.3
2,827,861	+		GFF2793	0.14	-0.4
2,827,861	+		GFF2793	0.14	+1.6
2,827,871	-		GFF2793	0.14	+0.3
2,827,883	+		GFF2793	0.15	-0.2
2,827,890	+		GFF2793	0.16	+1.0
2,827,890	+		GFF2793	0.16	+0.6
2,827,890	+		GFF2793	0.16	-0.5
2,827,890	+		GFF2793	0.16	-1.1
2,827,898	-		GFF2793	0.16	-2.1
2,827,916	-		GFF2793	0.18	+0.3
2,827,937	-		GFF2793	0.19	+0.4
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