Strain Fitness in Sphingobium sp. HT1-2 around GFF2776

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,809,302	-		GFF2775	0.50	-0.8
2,809,304	+		GFF2775	0.50	+0.3
2,809,304	+		GFF2775	0.50	-1.0
2,809,304	-		GFF2775	0.50	-0.1
2,809,328	-		GFF2775	0.51	-0.0
2,809,342	+		GFF2775	0.52	-2.2
2,809,347	-		GFF2775	0.52	-0.8
2,809,349	+		GFF2775	0.52	+1.0
2,809,352	-		GFF2775	0.52	-1.1
2,809,357	-		GFF2775	0.52	-0.4
2,809,357	-		GFF2775	0.52	+0.2
2,809,385	+		GFF2775	0.54	-0.3
2,809,385	+		GFF2775	0.54	-0.5
2,809,385	+		GFF2775	0.54	+0.2
2,809,393	-		GFF2775	0.54	-0.5
2,809,408	+		GFF2775	0.55	+0.3
2,809,413	+		GFF2775	0.55	+2.0
2,809,420	+		GFF2775	0.56	-0.3
2,809,420	+		GFF2775	0.56	-0.7
2,809,428	-		GFF2775	0.56	+0.1
2,809,432	+		GFF2775	0.56	-1.7
2,809,432	+		GFF2775	0.56	-1.8
2,809,432	+		GFF2775	0.56	-1.0
2,809,434	-		GFF2775	0.56	+0.0
2,809,435	-		GFF2775	0.56	+0.5
2,809,437	+		GFF2775	0.56	-1.4
2,809,440	-		GFF2775	0.57	+0.1
2,809,445	-		GFF2775	0.57	+0.2
2,809,445	-		GFF2775	0.57	-1.4
2,809,445	-		GFF2775	0.57	-0.4
2,809,473	+		GFF2775	0.58	+0.1
2,809,473	+		GFF2775	0.58	-0.8
2,809,473	+		GFF2775	0.58	+0.3
2,809,473	+		GFF2775	0.58	-0.1
2,809,473	+		GFF2775	0.58	+1.1
2,809,473	+		GFF2775	0.58	-0.7
2,809,473	+		GFF2775	0.58	-0.4
2,809,473	+		GFF2775	0.58	-0.1
2,809,473	+		GFF2775	0.58	-1.3
2,809,473	+		GFF2775	0.58	+1.3
2,809,481	-		GFF2775	0.59	-0.2
2,809,481	-		GFF2775	0.59	+0.2
2,809,481	-		GFF2775	0.59	+0.4
2,809,481	-		GFF2775	0.59	+0.8
2,809,481	-		GFF2775	0.59	+0.4
2,809,481	-		GFF2775	0.59	+0.3
2,809,481	-		GFF2775	0.59	+1.9
2,809,481	-		GFF2775	0.59	-1.0
2,809,481	-		GFF2775	0.59	+0.2
2,809,481	-		GFF2775	0.59	+0.5
2,809,481	-		GFF2775	0.59	-1.5
2,809,492	+		GFF2775	0.59	+1.2
2,809,492	+		GFF2775	0.59	-0.3
2,809,499	+		GFF2775	0.60	+1.9
2,809,500	+		GFF2775	0.60	-0.4
2,809,505	-		GFF2775	0.60	+0.6
2,809,508	-		GFF2775	0.60	+1.0
2,809,527	+		GFF2775	0.61	-0.7
2,809,558	-		GFF2775	0.63	-0.7
2,809,584	-		GFF2775	0.64	+0.7
2,809,589	-		GFF2775	0.64	-1.3
2,809,597	-		GFF2775	0.65	-0.2
2,809,633	+		GFF2775	0.66	-0.1
2,809,654	-		GFF2775	0.67	-0.3
2,809,655	+		GFF2775	0.68	+1.3
2,809,659	-		GFF2775	0.68	+0.6
2,809,726	-		GFF2775	0.71	-0.0
2,809,826	+		GFF2775	0.76	-1.4
2,809,916	+		GFF2775	0.81	+0.9
2,809,932	-		GFF2775	0.82	+0.8
2,809,971	-		GFF2775	0.84	+0.2
2,809,971	-		GFF2775	0.84	+0.2
2,809,998	-		GFF2775	0.85	+0.1
2,810,063	+		GFF2775	0.88	+0.9
2,810,073	-		GFF2775	0.89	-0.4
2,810,083	-		GFF2775	0.89	-0.3
2,810,118	-				+0.2
2,810,128	-				+0.4
2,810,135	+				+0.0
2,810,155	-				-0.5
2,810,155	-				+0.9
2,810,156	-				-0.8
2,810,156	-				-0.5
2,810,178	-				+1.8
2,810,243	+				-1.6
2,810,243	+				-1.0
2,810,248	+				-1.1
2,810,268	+				-0.2
2,810,321	+				+2.6
2,810,333	+				-0.1
2,810,334	+				-0.3
2,810,334	+				-1.3
2,810,339	+				-2.4
2,810,340	-				-1.5
2,810,352	-				-0.3
2,810,353	+				+0.7
2,810,357	-				-0.3
2,810,374	+				+1.7
2,810,378	+				-0.7
2,810,405	-				+0.5
2,810,456	+				+1.8
2,810,462	-				-0.9
2,810,464	-				-0.9
2,810,480	+				+0.8
2,810,481	-				-0.6
2,810,481	-				+0.0
2,810,493	-				-0.3
2,810,493	-				-0.5
2,810,500	-				-1.1
2,810,516	+		GFF2776	0.11	+0.7
2,810,521	+		GFF2776	0.11	-2.0
2,810,524	-		GFF2776	0.11	+1.0
2,810,524	-		GFF2776	0.11	+0.8
2,810,526	+		GFF2776	0.11	+0.1
2,810,546	-		GFF2776	0.12	-1.9
2,810,566	-		GFF2776	0.13	-2.8
2,810,566	-		GFF2776	0.13	-0.0
2,810,649	+		GFF2776	0.17	-0.2
2,810,655	+		GFF2776	0.17	+0.0
2,810,709	+		GFF2776	0.20	-0.8
2,810,717	-		GFF2776	0.20	+1.5
2,810,751	+		GFF2776	0.22	+1.0
2,810,776	-		GFF2776	0.23	-1.3
2,810,801	+		GFF2776	0.25	+0.3
2,810,821	+		GFF2776	0.26	-0.7
2,810,839	-		GFF2776	0.26	-0.0
2,810,847	+		GFF2776	0.27	-0.2
2,810,859	+		GFF2776	0.27	+0.1
2,810,867	-		GFF2776	0.28	+0.6
2,810,867	-		GFF2776	0.28	-0.1
2,810,867	-		GFF2776	0.28	-2.3
2,810,875	-		GFF2776	0.28	-0.1
2,810,875	-		GFF2776	0.28	-1.9
2,810,875	-		GFF2776	0.28	-1.2
2,810,883	+		GFF2776	0.29	-0.0
2,810,884	+		GFF2776	0.29	-0.6
2,810,890	-		GFF2776	0.29	+1.0
2,810,892	-		GFF2776	0.29	-1.5
2,810,907	-		GFF2776	0.30	+0.3
2,810,909	-		GFF2776	0.30	-0.8
2,810,930	+		GFF2776	0.31	+0.4
2,810,956	-		GFF2776	0.32	-0.6
2,810,966	-		GFF2776	0.33	-0.0
2,810,981	-		GFF2776	0.33	-0.5
2,810,996	-		GFF2776	0.34	+2.3
2,811,037	+		GFF2776	0.36	-0.8
2,811,037	+		GFF2776	0.36	-0.7
2,811,037	+		GFF2776	0.36	-1.2
2,811,062	+		GFF2776	0.37	+0.9
2,811,062	+		GFF2776	0.37	+0.1
2,811,064	-		GFF2776	0.38	-0.4
2,811,075	+		GFF2776	0.38	-1.0
2,811,083	-		GFF2776	0.39	-1.0
2,811,210	-		GFF2776	0.45	-0.7
2,811,215	-		GFF2776	0.45	-0.5
2,811,270	+		GFF2776	0.48	-0.2
2,811,388	-		GFF2776	0.54	-1.9
2,811,388	-		GFF2776	0.54	-1.1
2,811,527	-		GFF2776	0.60	-2.1
2,811,527	-		GFF2776	0.60	+0.3
2,811,527	-		GFF2776	0.60	+0.5
2,811,527	-		GFF2776	0.60	-0.3
2,811,630	-		GFF2776	0.65	+0.4
2,811,640	+		GFF2776	0.66	-2.1
2,811,648	-		GFF2776	0.66	+2.2
2,811,654	+		GFF2776	0.67	+0.1
2,811,660	-		GFF2776	0.67	-1.3
2,811,732	+		GFF2776	0.71	-0.4
2,811,745	-		GFF2776	0.71	-2.0
2,811,750	-		GFF2776	0.71	-1.2
2,811,761	-		GFF2776	0.72	+1.2
2,811,836	+		GFF2776	0.76	-1.0
2,811,836	+		GFF2776	0.76	-0.8
2,811,841	+		GFF2776	0.76	+0.4
2,811,846	+		GFF2776	0.76	-0.7
2,811,885	-		GFF2776	0.78	+0.5
2,811,894	-		GFF2776	0.79	+1.6
2,811,913	-		GFF2776	0.79	-0.1
2,811,913	-		GFF2776	0.79	-0.6
2,811,923	-		GFF2776	0.80	+0.5
2,811,983	+		GFF2776	0.83	-0.9
2,811,983	+		GFF2776	0.83	+1.2
2,811,983	+		GFF2776	0.83	-0.6
2,811,993	+		GFF2776	0.83	+0.4
2,811,993	+		GFF2776	0.83	+0.4
2,811,993	+		GFF2776	0.83	-1.8
2,811,993	+		GFF2776	0.83	+0.1
2,811,993	+		GFF2776	0.83	+0.3
2,812,011	+		GFF2776	0.84	+0.9
2,812,016	+		GFF2776	0.85	-0.5
2,812,024	-		GFF2776	0.85	-1.4
2,812,024	-		GFF2776	0.85	+1.7
2,812,024	-		GFF2776	0.85	-0.7
2,812,024	-		GFF2776	0.85	+2.0
2,812,077	-		GFF2776	0.88	+0.2
2,812,120	+		GFF2776	0.90	+0.7
2,812,144	-				-1.9
2,812,150	-				-0.1
2,812,151	-				-0.4
2,812,152	-				+1.0
2,812,174	+				+0.3
2,812,237	+				+0.0
2,812,243	+				-0.4
2,812,243	+				+1.0
2,812,256	-				+0.1
2,812,264	-				-0.7
2,812,273	-				+0.8
2,812,273	-				+1.3
2,812,314	+				-0.5
2,812,340	-				+1.1
2,812,380	-				-0.2
2,812,382	+				+0.7
2,812,421	+				-0.3
2,812,426	+				-0.8
2,812,438	+				-1.6
2,812,530	+				-0.4
2,812,538	-				-0.4
2,812,543	+				-1.4
2,812,548	+				+0.0
2,812,553	+				+0.3
2,812,556	-				-1.2
2,812,563	+				-1.3
2,812,563	+				-1.7
2,812,563	+				-0.1
2,812,563	+				+0.3
2,812,563	+				-0.5
2,812,563	+				+1.3
2,812,571	-				-0.7
2,812,571	-				-0.3
2,812,571	-				+0.6
2,812,571	-				+0.6
2,812,571	-				+0.6
2,812,571	-				-1.6
2,812,571	-				-1.0
2,812,571	-				+0.1
2,812,571	-				+0.2
2,812,598	+		GFF2777	0.12	-1.0
2,812,625	+		GFF2777	0.14	-1.1
2,812,633	-		GFF2777	0.14	+0.8
2,812,637	-		GFF2777	0.15	+0.0
2,812,639	+		GFF2777	0.15	-0.5
2,812,652	-		GFF2777	0.16	-0.3
2,812,695	-		GFF2777	0.19	-1.1
2,812,695	-		GFF2777	0.19	-0.1
2,812,744	-		GFF2777	0.22	+0.1
2,812,747	+		GFF2777	0.23	-0.5
2,812,806	+		GFF2777	0.27	+0.6
2,812,814	-		GFF2777	0.27	-1.0
2,812,889	-		GFF2777	0.33	-2.2
2,812,894	-		GFF2777	0.33	-0.6
2,812,896	+		GFF2777	0.33	-1.3
2,812,940	+		GFF2777	0.37	-1.7
2,812,948	-		GFF2777	0.37	+0.6
2,812,955	+		GFF2777	0.38	+1.7
2,813,037	+		GFF2777	0.44	+0.3
2,813,055	-		GFF2777	0.45	+0.2
2,813,087	-		GFF2777	0.47	-0.1
2,813,088	-		GFF2777	0.47	+0.7
2,813,111	+		GFF2777	0.49	+1.9
2,813,111	+		GFF2777	0.49	+0.2
2,813,111	+		GFF2777	0.49	+0.7
2,813,111	+		GFF2777	0.49	-1.0
2,813,119	-		GFF2777	0.50	+0.5
2,813,119	-		GFF2777	0.50	+0.0
2,813,119	-		GFF2777	0.50	-0.1
2,813,119	-		GFF2777	0.50	-0.1
2,813,119	-		GFF2777	0.50	+0.6
2,813,121	+		GFF2777	0.50	-0.4
2,813,129	-		GFF2777	0.50	-0.6
2,813,186	-		GFF2777	0.54	+0.2
2,813,188	+		GFF2777	0.55	+0.9
2,813,191	-		GFF2777	0.55	-0.2
2,813,193	+		GFF2777	0.55	+0.7
2,813,193	+		GFF2777	0.55	-0.1
2,813,196	-		GFF2777	0.55	+0.2
2,813,226	+		GFF2777	0.57	-0.6
2,813,229	-		GFF2777	0.58	+1.3
2,813,229	-		GFF2777	0.58	-1.1
2,813,259	-		GFF2777	0.60	+1.5