Strain Fitness in Sphingobium sp. HT1-2 around GFF2722

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,746,019	-		GFF2721	0.15	-2.3
2,746,028	+		GFF2721	0.15	-2.3
2,746,034	-		GFF2721	0.16	+0.4
2,746,034	-		GFF2721	0.16	+0.4
2,746,034	-		GFF2721	0.16	+0.5
2,746,034	-		GFF2721	0.16	+0.1
2,746,055	-		GFF2721	0.18	+1.9
2,746,061	-		GFF2721	0.18	+0.9
2,746,068	+		GFF2721	0.19	-0.9
2,746,081	-		GFF2721	0.20	-2.3
2,746,081	-		GFF2721	0.20	+0.1
2,746,087	-		GFF2721	0.21	+0.1
2,746,094	-		GFF2721	0.21	+0.2
2,746,102	-		GFF2721	0.22	-0.0
2,746,208	+		GFF2721	0.32	-1.2
2,746,215	+		GFF2721	0.32	-0.1
2,746,216	-		GFF2721	0.33	-0.3
2,746,216	-		GFF2721	0.33	+0.1
2,746,220	+		GFF2721	0.33	+0.1
2,746,228	-		GFF2721	0.34	-0.4
2,746,228	-		GFF2721	0.34	-1.2
2,746,236	+		GFF2721	0.34	-0.3
2,746,237	+		GFF2721	0.34	-2.2
2,746,237	+		GFF2721	0.34	+0.7
2,746,237	+		GFF2721	0.34	-0.5
2,746,307	+		GFF2721	0.41	+0.4
2,746,307	+		GFF2721	0.41	-1.5
2,746,319	-		GFF2721	0.42	+0.2
2,746,324	-		GFF2721	0.42	+0.3
2,746,326	-		GFF2721	0.43	+0.2
2,746,357	-		GFF2721	0.45	+0.8
2,746,359	+		GFF2721	0.46	+0.3
2,746,359	+		GFF2721	0.46	+0.2
2,746,367	-		GFF2721	0.46	-0.3
2,746,367	-		GFF2721	0.46	-0.1
2,746,378	+		GFF2721	0.47	+0.9
2,746,388	+		GFF2721	0.48	-0.4
2,746,388	+		GFF2721	0.48	-1.5
2,746,388	+		GFF2721	0.48	-0.8
2,746,388	+		GFF2721	0.48	-2.3
2,746,388	+		GFF2721	0.48	-1.1
2,746,388	+		GFF2721	0.48	-1.6
2,746,388	+		GFF2721	0.48	+1.1
2,746,388	+		GFF2721	0.48	+0.3
2,746,388	+		GFF2721	0.48	-0.2
2,746,388	+		GFF2721	0.48	+0.8
2,746,388	+		GFF2721	0.48	-1.3
2,746,388	+		GFF2721	0.48	-0.0
2,746,388	+		GFF2721	0.48	-0.1
2,746,388	+		GFF2721	0.48	-0.6
2,746,396	-		GFF2721	0.49	+1.3
2,746,396	-		GFF2721	0.49	-0.5
2,746,396	-		GFF2721	0.49	-1.4
2,746,396	-		GFF2721	0.49	-1.5
2,746,396	-		GFF2721	0.49	+1.1
2,746,396	-		GFF2721	0.49	+1.2
2,746,396	-		GFF2721	0.49	-0.2
2,746,396	-		GFF2721	0.49	+0.4
2,746,396	-		GFF2721	0.49	+0.1
2,746,396	-		GFF2721	0.49	+0.3
2,746,409	-		GFF2721	0.50	-2.9
2,746,414	+		GFF2721	0.50	-1.4
2,746,414	-		GFF2721	0.50	+0.0
2,746,422	-		GFF2721	0.51	-0.9
2,746,430	+		GFF2721	0.52	-1.4
2,746,467	+		GFF2721	0.55	+0.3
2,746,467	+		GFF2721	0.55	-0.4
2,746,475	-		GFF2721	0.56	+0.5
2,746,475	-		GFF2721	0.56	-0.6
2,746,475	-		GFF2721	0.56	+0.4
2,746,477	+		GFF2721	0.56	-0.7
2,746,482	+		GFF2721	0.57	-0.9
2,746,482	+		GFF2721	0.57	-0.1
2,746,490	-		GFF2721	0.57	+0.6
2,746,490	-		GFF2721	0.57	+1.1
2,746,490	-		GFF2721	0.57	-0.9
2,746,495	-		GFF2721	0.58	+0.6
2,746,527	-		GFF2721	0.61	-0.9
2,746,556	-		GFF2721	0.63	+0.8
2,746,566	-		GFF2721	0.64	-0.3
2,746,566	-		GFF2721	0.64	-0.4
2,746,577	+		GFF2721	0.65	-0.9
2,746,581	+		GFF2721	0.66	-1.3
2,746,581	+		GFF2721	0.66	+0.1
2,746,586	+		GFF2721	0.66	+2.2
2,746,586	+		GFF2721	0.66	-0.8
2,746,586	+		GFF2721	0.66	-1.2
2,746,586	+		GFF2721	0.66	-0.9
2,746,587	-		GFF2721	0.66	-0.6
2,746,589	-		GFF2721	0.66	+0.9
2,746,589	-		GFF2721	0.66	-0.7
2,746,589	-		GFF2721	0.66	+0.9
2,746,651	+		GFF2721	0.72	-0.5
2,746,651	+		GFF2721	0.72	+0.4
2,746,659	-		GFF2721	0.73	-0.3
2,746,671	+		GFF2721	0.74	+0.4
2,746,678	-		GFF2721	0.74	-1.1
2,746,678	-		GFF2721	0.74	-1.4
2,746,687	+		GFF2721	0.75	-0.4
2,746,700	-		GFF2721	0.76	-0.3
2,746,742	-		GFF2721	0.80	-0.4
2,746,747	-		GFF2721	0.81	+0.8
2,746,810	+		GFF2721	0.86	-1.2
2,746,829	+		GFF2721	0.88	-1.4
2,746,837	-		GFF2721	0.89	+0.8
2,746,853	+				-0.9
2,746,853	+				-1.9
2,746,855	+				-0.4
2,746,871	-				+0.7
2,746,871	-				+0.1
2,746,871	-				-1.3
2,746,886	+				+0.3
2,746,886	+				-0.5
2,746,889	-				-0.6
2,746,894	-				+0.3
2,746,894	-				+0.9
2,746,894	-				-0.9
2,746,894	-				-1.2
2,746,894	-				+0.2
2,746,896	-				-0.7
2,746,905	+				+0.5
2,746,911	-				-1.2
2,746,911	-				-0.7
2,746,919	-				-2.9
2,746,921	+				-0.3
2,746,939	+				+0.4
2,746,939	+				-1.1
2,746,947	-				-0.4
2,746,947	-				+0.3
2,746,954	+				-1.9
2,746,956	-				-2.3
2,746,960	+				-1.4
2,746,960	+				+0.5
2,746,960	+				-0.1
2,746,960	+				+0.6
2,746,960	+				-0.1
2,746,960	+				-0.3
2,746,960	+				+0.3
2,746,965	+				+1.1
2,746,968	-				-0.6
2,746,968	-				-1.6
2,746,968	-				-1.6
2,746,968	-				-0.0
2,746,968	-				+1.4
2,746,968	-				-2.8
2,746,968	-				-0.0
2,746,968	-				-0.7
2,746,973	-				+0.9
2,746,973	-				+0.3
2,746,973	-				-0.4
2,746,973	-				-0.3
2,746,991	-				-0.1
2,747,063	+				+0.7
2,747,070	+				-0.1
2,747,075	-				+0.9
2,747,080	-				-0.4
2,747,087	+				+0.5
2,747,087	+				+0.3
2,747,095	-				-0.3
2,747,095	-				-1.1
2,747,095	-				-0.6
2,747,132	+		GFF2722	0.12	+0.7
2,747,137	+		GFF2722	0.12	+0.2
2,747,137	+		GFF2722	0.12	+0.3
2,747,145	-		GFF2722	0.13	+0.6
2,747,145	-		GFF2722	0.13	-0.9
2,747,145	-		GFF2722	0.13	-1.7
2,747,145	-		GFF2722	0.13	-1.1
2,747,145	-		GFF2722	0.13	-1.1
2,747,159	+		GFF2722	0.14	+0.2
2,747,163	+		GFF2722	0.15	+0.0
2,747,186	+		GFF2722	0.17	+0.3
2,747,186	+		GFF2722	0.17	-2.9
2,747,186	+		GFF2722	0.17	+0.4
2,747,189	-		GFF2722	0.17	-1.3
2,747,194	-		GFF2722	0.18	-1.1
2,747,194	-		GFF2722	0.18	+0.3
2,747,194	-		GFF2722	0.18	-0.5
2,747,201	+		GFF2722	0.18	+0.4
2,747,201	+		GFF2722	0.18	+0.8
2,747,206	-		GFF2722	0.19	+0.5
2,747,208	+		GFF2722	0.19	-1.2
2,747,208	+		GFF2722	0.19	-1.1
2,747,208	+		GFF2722	0.19	+1.0
2,747,209	-		GFF2722	0.19	-1.2
2,747,216	-		GFF2722	0.20	-1.9
2,747,220	+		GFF2722	0.20	-0.2
2,747,226	+		GFF2722	0.21	-0.8
2,747,234	-		GFF2722	0.22	-0.9
2,747,234	-		GFF2722	0.22	+0.3
2,747,245	+		GFF2722	0.23	+0.8
2,747,256	-		GFF2722	0.24	-2.0
2,747,265	+		GFF2722	0.25	+1.3
2,747,266	-		GFF2722	0.25	+1.7
2,747,268	-		GFF2722	0.25	+0.3
2,747,273	-		GFF2722	0.25	-0.2
2,747,291	+		GFF2722	0.27	+1.8
2,747,291	+		GFF2722	0.27	+0.3
2,747,291	+		GFF2722	0.27	+0.3
2,747,291	+		GFF2722	0.27	-2.8
2,747,299	-		GFF2722	0.28	-0.7
2,747,315	+		GFF2722	0.30	-1.3
2,747,323	-		GFF2722	0.30	-0.2
2,747,325	+		GFF2722	0.30	-0.9
2,747,327	+		GFF2722	0.31	-0.1
2,747,328	-		GFF2722	0.31	+0.8
2,747,333	-		GFF2722	0.31	-0.2
2,747,333	-		GFF2722	0.31	+0.1
2,747,335	-		GFF2722	0.31	-0.3
2,747,356	+		GFF2722	0.34	+0.6
2,747,356	+		GFF2722	0.34	+0.0
2,747,379	-		GFF2722	0.36	+0.3
2,747,397	+		GFF2722	0.38	+0.2
2,747,401	-		GFF2722	0.38	+0.1
2,747,405	-		GFF2722	0.38	-1.5
2,747,405	-		GFF2722	0.38	+0.7
2,747,405	-		GFF2722	0.38	-1.8
2,747,422	+		GFF2722	0.40	-1.2
2,747,441	-		GFF2722	0.42	-0.8
2,747,443	+		GFF2722	0.42	-0.7
2,747,451	-		GFF2722	0.43	-0.5
2,747,451	-		GFF2722	0.43	-0.1
2,747,457	+		GFF2722	0.43	+1.2
2,747,457	+		GFF2722	0.43	-2.5
2,747,465	-		GFF2722	0.44	-0.2
2,747,465	-		GFF2722	0.44	-0.0
2,747,465	-		GFF2722	0.44	+0.2
2,747,471	+		GFF2722	0.45	+0.4
2,747,471	+		GFF2722	0.45	+1.1
2,747,471	+		GFF2722	0.45	-0.2
2,747,471	+		GFF2722	0.45	+0.5
2,747,472	-		GFF2722	0.45	-0.2
2,747,479	-		GFF2722	0.46	+0.7
2,747,479	-		GFF2722	0.46	+0.4
2,747,479	-		GFF2722	0.46	-1.3
2,747,479	-		GFF2722	0.46	+1.6
2,747,519	+		GFF2722	0.50	-1.3
2,747,534	-		GFF2722	0.51	-1.2
2,747,541	-		GFF2722	0.52	-1.9
2,747,544	+		GFF2722	0.52	+0.4
2,747,546	+		GFF2722	0.52	-0.6
2,747,552	-		GFF2722	0.53	-0.2
2,747,556	+		GFF2722	0.53	+0.2
2,747,556	+		GFF2722	0.53	-0.3
2,747,556	+		GFF2722	0.53	-2.4
2,747,556	+		GFF2722	0.53	+0.0
2,747,556	+		GFF2722	0.53	+0.3
2,747,564	-		GFF2722	0.54	-0.4
2,747,564	-		GFF2722	0.54	-0.2
2,747,564	-		GFF2722	0.54	+1.7
2,747,565	+		GFF2722	0.54	-1.5
2,747,569	-		GFF2722	0.54	+0.4
2,747,569	-		GFF2722	0.54	-0.2
2,747,594	+		GFF2722	0.57	-0.7
2,747,604	+		GFF2722	0.58	-0.1
2,747,604	+		GFF2722	0.58	-0.1
2,747,604	+		GFF2722	0.58	+2.4
2,747,612	-		GFF2722	0.59	+0.7
2,747,612	-		GFF2722	0.59	-2.7
2,747,637	-		GFF2722	0.61	-0.7
2,747,637	-		GFF2722	0.61	+0.1
2,747,639	-		GFF2722	0.61	-0.1
2,747,639	-		GFF2722	0.61	+0.6
2,747,648	+		GFF2722	0.62	+0.6
2,747,682	+		GFF2722	0.65	-2.1
2,747,685	+		GFF2722	0.66	+1.7
2,747,685	+		GFF2722	0.66	+0.0
2,747,694	+		GFF2722	0.67	-0.7
2,747,699	+		GFF2722	0.67	-1.7
2,747,700	-		GFF2722	0.67	-1.6
2,747,700	-		GFF2722	0.67	-0.0
2,747,713	-		GFF2722	0.69	-0.0
2,747,737	+		GFF2722	0.71	-0.5
2,747,742	+		GFF2722	0.71	-0.4
2,747,756	+		GFF2722	0.73	+0.2
2,747,764	-		GFF2722	0.74	+0.2
2,747,808	+		GFF2722	0.78	-0.1
2,747,808	+		GFF2722	0.78	-2.0
2,747,808	+		GFF2722	0.78	-1.4
2,747,814	+		GFF2722	0.78	-0.4
2,747,816	-		GFF2722	0.79	+1.0
2,747,818	+		GFF2722	0.79	-1.3
2,747,818	+		GFF2722	0.79	+0.4
2,747,818	+		GFF2722	0.79	-0.8
2,747,826	-		GFF2722	0.80	+0.0
2,747,826	-		GFF2722	0.80	+0.0
2,747,836	+		GFF2722	0.81	-0.2
2,747,836	+		GFF2722	0.81	-1.0
2,747,849	-		GFF2722	0.82	-0.9
2,747,857	+		GFF2722	0.83	-0.8
2,747,860	-		GFF2722	0.83	+0.3
2,747,864	+		GFF2722	0.83	+0.1
2,747,903	+		GFF2722	0.87	+0.3
2,747,908	+		GFF2722	0.88	+0.1
2,747,911	-		GFF2722	0.88	+0.4
2,747,911	-		GFF2722	0.88	-0.3
2,747,913	+		GFF2722	0.88	-1.3
2,747,916	-		GFF2722	0.88	+1.1
2,747,916	-		GFF2722	0.88	-0.8
2,747,926	-		GFF2722	0.89	+1.3
2,747,945	+				-2.4
2,747,952	-				-1.7
2,747,961	+				-2.4
2,747,966	+				-0.7
2,747,993	+				-0.6
2,747,999	-				+0.1
2,748,003	+				-1.3
2,748,003	+				-0.4
2,748,011	-				+0.1
2,748,025	-				-0.7
2,748,027	+				-0.8
2,748,027	+				-1.1
2,748,035	-				+2.2
2,748,035	-				+0.7
2,748,035	-				-0.4
2,748,050	+				-0.5
2,748,050	+				-0.2
2,748,050	+				-0.2
2,748,056	+				-0.2
2,748,056	+				+0.9
2,748,058	-				+0.7
2,748,058	-				-0.7
2,748,058	-				-0.7
2,748,059	-				+0.5
2,748,064	-				-0.4
2,748,073	+				-0.9
2,748,073	+				-2.1
2,748,073	+				+0.7
2,748,073	+				-1.1
2,748,073	+				-0.2
2,748,073	+				+0.2
2,748,073	+				-0.5
2,748,073	+				-0.1
2,748,073	+				+0.2
2,748,073	+				+0.5
2,748,073	+				-0.4
2,748,073	+				-1.8
2,748,073	+				-0.9
2,748,073	+				-0.7
2,748,073	+				+0.2
2,748,073	+				+0.9
2,748,073	+				+1.2
2,748,073	+				+0.6
2,748,073	+				+0.4
2,748,073	+				+0.5
2,748,073	+				+1.4
2,748,073	+				+0.1
2,748,081	-				-2.2
2,748,081	-				-1.1
2,748,081	-				+0.6
2,748,081	-				+1.4
2,748,081	-				+0.2
2,748,081	-				-0.1
2,748,081	-				-1.3
2,748,081	-				+0.2
2,748,081	-				-1.3
2,748,081	-				+0.0
2,748,081	-				-1.1
2,748,081	-				-0.3
2,748,081	-				+1.3
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