Strain Fitness in Sphingobium sp. HT1-2 around GFF2697

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,718,790	-		GFF2696	0.12	+0.7
2,718,790	-		GFF2696	0.12	-1.1
2,718,803	-		GFF2696	0.14	-0.7
2,718,811	-		GFF2696	0.14	-0.0
2,718,866	+		GFF2696	0.19	+1.4
2,718,880	-		GFF2696	0.21	-2.1
2,718,885	-		GFF2696	0.21	-0.3
2,718,901	+		GFF2696	0.23	-0.1
2,718,911	+		GFF2696	0.24	-0.3
2,718,919	+		GFF2696	0.24	-0.0
2,718,919	+		GFF2696	0.24	+0.7
2,718,919	+		GFF2696	0.24	-1.5
2,718,921	+		GFF2696	0.25	-0.5
2,718,927	-		GFF2696	0.25	+0.2
2,718,928	+		GFF2696	0.25	+0.2
2,718,951	+		GFF2696	0.27	+0.9
2,718,964	+		GFF2696	0.29	+0.2
2,718,969	+		GFF2696	0.29	+0.8
2,718,969	+		GFF2696	0.29	-0.4
2,718,972	+		GFF2696	0.29	-1.5
2,718,972	-		GFF2696	0.29	-1.4
2,718,972	-		GFF2696	0.29	+0.1
2,718,977	-		GFF2696	0.30	-0.9
2,718,977	-		GFF2696	0.30	+0.3
2,718,977	-		GFF2696	0.30	-1.8
2,718,980	-		GFF2696	0.30	-0.7
2,718,980	-		GFF2696	0.30	+1.9
2,719,007	-		GFF2696	0.33	+0.5
2,719,023	+		GFF2696	0.34	+0.1
2,719,023	-		GFF2696	0.34	+0.6
2,719,028	+		GFF2696	0.35	+1.1
2,719,028	+		GFF2696	0.35	+0.5
2,719,031	-		GFF2696	0.35	-1.8
2,719,034	+		GFF2696	0.35	-1.9
2,719,036	-		GFF2696	0.35	-0.1
2,719,060	+		GFF2696	0.38	-0.6
2,719,068	-		GFF2696	0.38	-1.7
2,719,070	+		GFF2696	0.38	-1.2
2,719,105	+		GFF2696	0.42	+1.5
2,719,111	-		GFF2696	0.42	+1.2
2,719,114	+		GFF2696	0.43	+1.0
2,719,114	+		GFF2696	0.43	-0.3
2,719,114	+		GFF2696	0.43	-0.4
2,719,119	+		GFF2696	0.43	-1.8
2,719,122	-		GFF2696	0.43	+0.9
2,719,127	-		GFF2696	0.44	+0.7
2,719,127	-		GFF2696	0.44	+0.9
2,719,141	-		GFF2696	0.45	-0.3
2,719,147	+		GFF2696	0.46	+0.1
2,719,149	+		GFF2696	0.46	-0.1
2,719,167	+		GFF2696	0.48	+1.1
2,719,169	+		GFF2696	0.48	+0.7
2,719,170	-		GFF2696	0.48	-1.7
2,719,203	+		GFF2696	0.51	+0.3
2,719,231	-		GFF2696	0.54	-2.1
2,719,253	-		GFF2696	0.56	-0.7
2,719,253	-		GFF2696	0.56	+0.3
2,719,258	-		GFF2696	0.56	+0.3
2,719,258	-		GFF2696	0.56	-0.9
2,719,262	+		GFF2696	0.56	-0.2
2,719,262	+		GFF2696	0.56	-2.0
2,719,268	-		GFF2696	0.57	+0.9
2,719,270	-		GFF2696	0.57	-0.2
2,719,274	-		GFF2696	0.58	-2.5
2,719,285	+		GFF2696	0.59	+0.5
2,719,285	+		GFF2696	0.59	+0.4
2,719,285	+		GFF2696	0.59	-0.2
2,719,285	+		GFF2696	0.59	-0.2
2,719,293	-		GFF2696	0.59	-1.4
2,719,293	-		GFF2696	0.59	-0.7
2,719,293	-		GFF2696	0.59	-1.4
2,719,293	-		GFF2696	0.59	-0.3
2,719,293	-		GFF2696	0.59	-0.8
2,719,307	+		GFF2696	0.61	-1.1
2,719,307	+		GFF2696	0.61	+0.2
2,719,312	+		GFF2696	0.61	+0.0
2,719,312	+		GFF2696	0.61	+1.0
2,719,312	+		GFF2696	0.61	-1.5
2,719,320	+		GFF2696	0.62	+0.2
2,719,320	+		GFF2696	0.62	-1.3
2,719,320	+		GFF2696	0.62	+1.5
2,719,320	+		GFF2696	0.62	+0.2
2,719,320	+		GFF2696	0.62	-0.7
2,719,320	+		GFF2696	0.62	+0.7
2,719,320	+		GFF2696	0.62	-1.1
2,719,320	+		GFF2696	0.62	-0.7
2,719,320	+		GFF2696	0.62	+0.0
2,719,320	+		GFF2696	0.62	+0.5
2,719,320	+		GFF2696	0.62	+0.0
2,719,320	+		GFF2696	0.62	-1.2
2,719,320	-		GFF2696	0.62	-0.1
2,719,322	+		GFF2696	0.62	+1.7
2,719,322	+		GFF2696	0.62	-0.8
2,719,322	+		GFF2696	0.62	+0.8
2,719,326	-		GFF2696	0.62	-0.9
2,719,328	-		GFF2696	0.63	-1.5
2,719,328	-		GFF2696	0.63	-0.1
2,719,328	-		GFF2696	0.63	+0.2
2,719,328	-		GFF2696	0.63	-1.9
2,719,328	-		GFF2696	0.63	+0.8
2,719,328	-		GFF2696	0.63	-1.2
2,719,328	-		GFF2696	0.63	+0.5
2,719,328	-		GFF2696	0.63	-0.0
2,719,328	-		GFF2696	0.63	-0.7
2,719,328	-		GFF2696	0.63	-2.0
2,719,328	-		GFF2696	0.63	+0.6
2,719,328	-		GFF2696	0.63	+0.4
2,719,328	-		GFF2696	0.63	-0.0
2,719,328	-		GFF2696	0.63	-1.0
2,719,328	-		GFF2696	0.63	+0.8
2,719,328	-		GFF2696	0.63	-0.2
2,719,328	-		GFF2696	0.63	-0.3
2,719,329	+		GFF2696	0.63	-0.6
2,719,330	-		GFF2696	0.63	+0.9
2,719,330	-		GFF2696	0.63	+0.1
2,719,330	-		GFF2696	0.63	-1.9
2,719,334	+		GFF2696	0.63	-0.6
2,719,339	+		GFF2696	0.64	+0.4
2,719,347	+		GFF2696	0.64	+1.0
2,719,347	-		GFF2696	0.64	+0.1
2,719,352	+		GFF2696	0.65	+0.4
2,719,352	+		GFF2696	0.65	-1.6
2,719,355	-		GFF2696	0.65	-1.2
2,719,362	+		GFF2696	0.66	-1.4
2,719,371	-		GFF2696	0.67	+0.8
2,719,386	+		GFF2696	0.68	-0.6
2,719,436	+		GFF2696	0.73	+0.1
2,719,444	-		GFF2696	0.73	+0.4
2,719,449	+		GFF2696	0.74	-0.8
2,719,462	-		GFF2696	0.75	+0.3
2,719,485	+		GFF2696	0.77	+0.3
2,719,501	-		GFF2696	0.79	+0.1
2,719,503	-		GFF2696	0.79	+0.1
2,719,503	-		GFF2696	0.79	-0.9
2,719,508	-		GFF2696	0.79	-1.2
2,719,513	+		GFF2696	0.80	-1.8
2,719,518	+		GFF2696	0.80	-0.3
2,719,518	+		GFF2696	0.80	-1.1
2,719,518	+		GFF2696	0.80	+0.3
2,719,520	+		GFF2696	0.80	-2.1
2,719,521	-		GFF2696	0.81	-1.2
2,719,522	-		GFF2696	0.81	-0.3
2,719,532	+		GFF2696	0.82	-0.4
2,719,540	-		GFF2696	0.82	-1.6
2,719,550	-		GFF2696	0.83	-0.1
2,719,558	+		GFF2696	0.84	+0.4
2,719,558	+		GFF2696	0.84	-0.7
2,719,558	+		GFF2696	0.84	+0.1
2,719,563	+		GFF2696	0.85	+0.9
2,719,563	+		GFF2696	0.85	+0.8
2,719,563	+		GFF2696	0.85	+0.3
2,719,566	-		GFF2696	0.85	-0.3
2,719,566	-		GFF2696	0.85	-1.7
2,719,566	-		GFF2696	0.85	-0.4
2,719,571	-		GFF2696	0.85	+0.6
2,719,577	+		GFF2696	0.86	+0.5
2,719,577	+		GFF2696	0.86	-0.7
2,719,585	+		GFF2696	0.87	-0.7
2,719,587	+		GFF2696	0.87	+0.7
2,719,587	+		GFF2696	0.87	+0.5
2,719,593	-		GFF2696	0.87	-1.6
2,719,593	-		GFF2696	0.87	+1.0
2,719,595	-		GFF2696	0.87	+0.9
2,719,595	-		GFF2696	0.87	+0.9
2,719,595	-		GFF2696	0.87	+0.4
2,719,595	-		GFF2696	0.87	-1.8
2,719,602	-		GFF2696	0.88	+0.7
2,719,626	+				-0.0
2,719,645	+				+0.3
2,719,650	+				-0.2
2,719,653	+				+0.7
2,719,653	+				-1.1
2,719,653	-				-2.3
2,719,658	+				-0.1
2,719,669	+				-1.9
2,719,677	-				-0.0
2,719,678	-				-0.5
2,719,691	-				-0.1
2,719,691	-				-0.5
2,719,696	-				-0.4
2,719,701	-				+1.4
2,719,707	+				+0.4
2,719,707	+				-0.4
2,719,707	+				-1.3
2,719,715	-				-1.1
2,719,721	-				-0.6
2,719,721	-				+0.7
2,719,723	+				-0.4
2,719,723	+				-0.1
2,719,727	+				-0.2
2,719,735	-				-2.4
2,719,760	+				-0.7
2,719,770	+				+1.2
2,719,770	+				+1.3
2,719,785	+				-0.4
2,719,790	-				+0.7
2,719,797	-				-2.3
2,719,809	+				-1.2
2,719,812	-				-1.1
2,719,812	-				+0.5
2,719,819	-				+1.4
2,719,836	+				-0.8
2,719,847	+		GFF2697	0.11	+2.0
2,719,853	-		GFF2697	0.12	+0.1
2,719,855	+		GFF2697	0.13	-0.6
2,719,859	+		GFF2697	0.13	+0.7
2,719,863	-		GFF2697	0.14	+1.0
2,719,863	-		GFF2697	0.14	+1.5
2,719,873	+		GFF2697	0.16	-0.1
2,719,873	+		GFF2697	0.16	-0.6
2,719,883	+		GFF2697	0.18	+0.8
2,719,883	+		GFF2697	0.18	-0.8
2,719,886	-		GFF2697	0.18	-0.3
2,719,889	+		GFF2697	0.19	+0.8
2,719,891	+		GFF2697	0.19	-1.2
2,719,897	-		GFF2697	0.20	-1.4
2,719,921	-		GFF2697	0.25	-0.2
2,719,930	+		GFF2697	0.27	-0.3
2,719,956	+		GFF2697	0.31	-0.0
2,719,959	-		GFF2697	0.32	-0.3
2,719,984	-		GFF2697	0.37	-1.1
2,719,986	+		GFF2697	0.37	-0.4
2,720,002	-		GFF2697	0.40	-1.1
2,720,004	-		GFF2697	0.40	+0.0
2,720,015	-		GFF2697	0.43	+1.3
2,720,043	+		GFF2697	0.48	-1.5
2,720,051	-		GFF2697	0.49	-0.2
2,720,067	-		GFF2697	0.52	-1.4
2,720,070	+		GFF2697	0.53	+0.5
2,720,070	+		GFF2697	0.53	-0.5
2,720,070	+		GFF2697	0.53	+0.6
2,720,078	-		GFF2697	0.54	+0.6
2,720,078	-		GFF2697	0.54	+1.1
2,720,078	-		GFF2697	0.54	-1.1
2,720,078	-		GFF2697	0.54	-1.1
2,720,088	+		GFF2697	0.56	-0.0
2,720,095	-		GFF2697	0.57	+0.3
2,720,095	-		GFF2697	0.57	-0.5
2,720,096	-		GFF2697	0.58	+1.3
2,720,116	+		GFF2697	0.61	+0.6
2,720,124	-		GFF2697	0.63	+0.1
2,720,124	-		GFF2697	0.63	+1.3
2,720,124	-		GFF2697	0.63	-0.1
2,720,131	+		GFF2697	0.64	+1.3
2,720,137	+		GFF2697	0.65	-0.6
2,720,145	-		GFF2697	0.67	+0.1
2,720,145	-		GFF2697	0.67	+0.4
2,720,145	-		GFF2697	0.67	-0.4
2,720,147	+		GFF2697	0.67	-1.1
2,720,150	-		GFF2697	0.68	+0.2
2,720,152	+		GFF2697	0.68	-0.1
2,720,152	+		GFF2697	0.68	-1.2
2,720,152	+		GFF2697	0.68	-0.9
2,720,152	+		GFF2697	0.68	+0.4
2,720,155	-		GFF2697	0.69	-0.2
2,720,160	-		GFF2697	0.70	-0.8
2,720,160	-		GFF2697	0.70	+0.7
2,720,160	-		GFF2697	0.70	-0.0
2,720,160	-		GFF2697	0.70	-0.3
2,720,166	+		GFF2697	0.71	+0.6
2,720,188	+		GFF2697	0.75	-0.3
2,720,190	-		GFF2697	0.75	+0.6
2,720,202	-		GFF2697	0.78	+0.6
2,720,225	+		GFF2697	0.82	+1.7
2,720,246	+		GFF2697	0.86	+0.1
2,720,246	+		GFF2697	0.86	-0.1
2,720,252	-		GFF2697	0.87	-0.1
2,720,253	+		GFF2697	0.87	+0.6
2,720,253	+		GFF2697	0.87	+0.4
2,720,254	-		GFF2697	0.87	+0.5
2,720,254	-		GFF2697	0.87	-0.6
2,720,254	-		GFF2697	0.87	+0.1
2,720,254	-		GFF2697	0.87	-0.7
2,720,254	-		GFF2697	0.87	-0.4
2,720,263	+		GFF2697	0.89	-1.0
2,720,271	+				-0.8
2,720,271	+				+0.4
2,720,273	+				+0.9
2,720,279	-				+0.3
2,720,281	-				+0.9
2,720,283	+				+0.1
2,720,288	+				+0.9
2,720,291	-				-0.0
2,720,291	-				-0.1
2,720,296	-				-0.1
2,720,309	+				+1.1
2,720,315	+				-0.8
2,720,316	-				-1.8
2,720,316	-				-1.2
2,720,318	-				+0.4
2,720,318	-				-0.7
2,720,323	-				-0.1
2,720,323	-				+0.4
2,720,323	-				-1.0
2,720,323	-				-1.3
2,720,323	-				-1.9
2,720,323	-				-0.6
2,720,347	-				+0.2
2,720,357	+				+0.8
2,720,357	+				+2.4
2,720,381	+				-0.5
2,720,389	+				-0.2
2,720,412	+				+0.5
2,720,413	+				+0.1
2,720,413	+				-0.2
2,720,413	+				-0.1
2,720,416	+				+0.4
2,720,416	-				-0.2
2,720,418	+				-0.1
2,720,418	+				-0.6
2,720,421	-				-1.2
2,720,421	-				-1.4
2,720,435	+				-0.9
2,720,435	+				-0.4
2,720,435	+				+0.9
2,720,440	+				-1.3
2,720,443	-				+1.5
2,720,443	-				+1.6
2,720,453	-				+0.4
2,720,465	+				+1.1
2,720,470	+				+0.4
2,720,503	+				+0.5
2,720,503	+				-1.4
2,720,503	+				-0.6
2,720,510	+		GFF2698	0.12	+0.6
2,720,510	+		GFF2698	0.12	+0.5
2,720,510	+		GFF2698	0.12	-1.1
2,720,510	+		GFF2698	0.12	+0.9
2,720,511	-		GFF2698	0.12	-0.8
2,720,515	+		GFF2698	0.14	+0.0
2,720,516	-		GFF2698	0.14	-0.6
2,720,518	-		GFF2698	0.15	+0.3
2,720,518	-		GFF2698	0.15	+0.1
2,720,518	-		GFF2698	0.15	+0.5
2,720,520	-		GFF2698	0.16	+0.6
2,720,528	-		GFF2698	0.19	+1.3
2,720,528	-		GFF2698	0.19	-1.3
2,720,570	+		GFF2698	0.37	-1.0
2,720,578	-		GFF2698	0.41	-0.4
2,720,578	-		GFF2698	0.41	+0.1
2,720,578	-		GFF2698	0.41	+0.2
2,720,637	+		GFF2698	0.65	+0.8
2,720,637	+		GFF2698	0.65	-2.0
2,720,637	+		GFF2698	0.65	-0.1
2,720,639	+		GFF2698	0.66	-0.1
2,720,645	-		GFF2698	0.69	+0.1
2,720,659	+		GFF2698	0.75	-1.2
2,720,666	-		GFF2698	0.78	-0.7
2,720,697	+				-0.8
2,720,697	+				-0.1
2,720,705	-				+0.8
2,720,705	-				-0.6
2,720,705	-				-0.2
2,720,721	+				-0.1
2,720,721	-				-0.5
2,720,721	-				-0.2
2,720,721	-				+0.6
2,720,721	-				-0.0
2,720,722	-				+1.4
2,720,746	+				-1.1
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