Strain Fitness in Sphingobium sp. HT1-2 around GFF2685

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,705,312	-				-0.2
2,705,316	-				+0.2
2,705,326	-		GFF2684	0.11	-0.5
2,705,330	+		GFF2684	0.11	-1.9
2,705,338	-		GFF2684	0.12	+0.7
2,705,338	-		GFF2684	0.12	-0.8
2,705,338	-		GFF2684	0.12	-0.7
2,705,354	+		GFF2684	0.14	-0.4
2,705,354	+		GFF2684	0.14	-0.7
2,705,364	-		GFF2684	0.15	-0.9
2,705,390	+		GFF2684	0.18	-0.7
2,705,398	-		GFF2684	0.19	+0.4
2,705,410	+		GFF2684	0.21	-0.1
2,705,410	+		GFF2684	0.21	-1.2
2,705,419	-		GFF2684	0.22	-0.0
2,705,429	+		GFF2684	0.23	+0.3
2,705,440	-		GFF2684	0.24	+1.0
2,705,442	+		GFF2684	0.25	-0.7
2,705,465	+		GFF2684	0.27	-0.6
2,705,473	+		GFF2684	0.28	+1.5
2,705,473	-		GFF2684	0.28	-2.6
2,705,473	-		GFF2684	0.28	-1.4
2,705,473	-		GFF2684	0.28	-0.1
2,705,491	+		GFF2684	0.30	+1.1
2,705,491	+		GFF2684	0.30	-0.4
2,705,499	-		GFF2684	0.31	-0.5
2,705,499	-		GFF2684	0.31	+0.0
2,705,499	-		GFF2684	0.31	-0.5
2,705,499	-		GFF2684	0.31	-0.5
2,705,507	+		GFF2684	0.32	+0.0
2,705,520	-		GFF2684	0.34	+0.6
2,705,522	+		GFF2684	0.34	-0.7
2,705,523	+		GFF2684	0.34	+0.2
2,705,548	-		GFF2684	0.37	-1.9
2,705,548	-		GFF2684	0.37	+0.1
2,705,548	-		GFF2684	0.37	+1.3
2,705,557	+		GFF2684	0.38	+0.5
2,705,565	+		GFF2684	0.39	-0.0
2,705,565	-		GFF2684	0.39	-1.2
2,705,582	+		GFF2684	0.41	+0.3
2,705,585	-		GFF2684	0.41	+0.4
2,705,587	+		GFF2684	0.42	+0.4
2,705,591	+		GFF2684	0.42	-0.7
2,705,599	-		GFF2684	0.43	+0.9
2,705,599	-		GFF2684	0.43	-1.8
2,705,599	-		GFF2684	0.43	-0.2
2,705,675	+		GFF2684	0.52	+0.7
2,705,676	-		GFF2684	0.52	-0.1
2,705,676	-		GFF2684	0.52	+1.2
2,705,683	-		GFF2684	0.53	+0.6
2,705,683	-		GFF2684	0.53	-2.2
2,705,683	-		GFF2684	0.53	-1.1
2,705,684	+		GFF2684	0.53	-1.5
2,705,707	+		GFF2684	0.56	-0.2
2,705,707	+		GFF2684	0.56	+0.5
2,705,712	+		GFF2684	0.56	+0.0
2,705,715	-		GFF2684	0.56	-0.4
2,705,715	-		GFF2684	0.56	+0.3
2,705,715	-		GFF2684	0.56	+0.4
2,705,717	+		GFF2684	0.57	+0.5
2,705,720	-		GFF2684	0.57	+0.8
2,705,720	-		GFF2684	0.57	+0.6
2,705,720	-		GFF2684	0.57	-0.1
2,705,745	-		GFF2684	0.60	+0.3
2,705,755	+		GFF2684	0.61	-0.4
2,705,757	+		GFF2684	0.61	-0.7
2,705,761	+		GFF2684	0.62	+0.2
2,705,769	-		GFF2684	0.63	-0.3
2,705,777	+		GFF2684	0.64	-1.1
2,705,777	+		GFF2684	0.64	-0.9
2,705,785	-		GFF2684	0.65	-0.5
2,705,796	+		GFF2684	0.66	-0.8
2,705,799	-		GFF2684	0.66	-1.2
2,705,804	-		GFF2684	0.67	-1.3
2,705,808	-		GFF2684	0.67	-2.2
2,705,813	-		GFF2684	0.68	-1.2
2,705,818	-		GFF2684	0.69	+0.7
2,705,855	-		GFF2684	0.73	-0.2
2,705,856	+		GFF2684	0.73	-0.8
2,705,862	-		GFF2684	0.74	+1.3
2,705,864	-		GFF2684	0.74	-0.4
2,705,864	-		GFF2684	0.74	+0.6
2,705,882	-		GFF2684	0.76	+1.4
2,705,887	-		GFF2684	0.77	-0.4
2,705,893	+		GFF2684	0.77	+0.4
2,705,893	-		GFF2684	0.77	-0.0
2,705,903	+		GFF2684	0.78	+0.6
2,705,913	-		GFF2684	0.80	+0.3
2,706,017	+				-0.4
2,706,025	-				-2.6
2,706,050	-				+0.8
2,706,060	-				+0.2
2,706,070	+				+0.3
2,706,070	+				+0.2
2,706,070	+				-0.5
2,706,070	+				-0.8
2,706,078	-				+0.2
2,706,078	-				+0.4
2,706,080	+				+0.1
2,706,083	-				-0.5
2,706,126	-				-1.4
2,706,128	+				+0.8
2,706,128	+				+1.0
2,706,128	+				-1.2
2,706,128	+				-2.2
2,706,136	-				-0.3
2,706,166	-				-0.4
2,706,183	-				-0.2
2,706,185	+				-2.3
2,706,186	-				+0.3
2,706,186	-				-1.3
2,706,186	-				-1.2
2,706,194	-				-0.5
2,706,196	+				-2.2
2,706,196	+				-1.4
2,706,204	-				+1.8
2,706,204	-				+0.3
2,706,212	+				+1.1
2,706,233	+				+1.4
2,706,264	+				+0.5
2,706,272	-				-0.1
2,706,299	+				-0.5
2,706,304	+				-2.5
2,706,304	+				-1.0
2,706,315	+				+0.3
2,706,315	+				+0.9
2,706,315	+				-2.6
2,706,316	+				+0.9
2,706,317	-				+1.0
2,706,317	-				-0.1
2,706,323	-				-0.2
2,706,323	-				+1.6
2,706,324	-				+0.3
2,706,346	-		GFF2685	0.12	-0.1
2,706,350	+		GFF2685	0.13	+0.1
2,706,350	+		GFF2685	0.13	+1.7
2,706,360	+		GFF2685	0.16	+1.0
2,706,360	+		GFF2685	0.16	-0.3
2,706,360	+		GFF2685	0.16	+0.3
2,706,360	+		GFF2685	0.16	-0.4
2,706,360	+		GFF2685	0.16	+0.6
2,706,360	+		GFF2685	0.16	+0.5
2,706,362	+		GFF2685	0.17	-1.0
2,706,362	+		GFF2685	0.17	+0.1
2,706,368	-		GFF2685	0.19	+0.6
2,706,368	-		GFF2685	0.19	+0.7
2,706,368	-		GFF2685	0.19	-0.0
2,706,368	-		GFF2685	0.19	-0.3
2,706,368	-		GFF2685	0.19	+1.5
2,706,368	-		GFF2685	0.19	+0.4
2,706,368	-		GFF2685	0.19	+0.2
2,706,370	+		GFF2685	0.19	+0.5
2,706,370	-		GFF2685	0.19	+0.6
2,706,404	+		GFF2685	0.30	+0.2
2,706,404	+		GFF2685	0.30	-0.8
2,706,408	+		GFF2685	0.31	-0.5
2,706,412	-		GFF2685	0.32	+0.1
2,706,421	-		GFF2685	0.35	-0.2
2,706,425	+		GFF2685	0.36	-0.1
2,706,427	+		GFF2685	0.37	+0.5
2,706,428	-		GFF2685	0.37	-2.5
2,706,430	+		GFF2685	0.38	-0.3
2,706,433	-		GFF2685	0.39	+1.8
2,706,435	+		GFF2685	0.39	-0.5
2,706,443	-		GFF2685	0.42	-0.5
2,706,463	+		GFF2685	0.48	+0.1
2,706,463	+		GFF2685	0.48	-0.3
2,706,464	-		GFF2685	0.48	+0.7
2,706,471	-		GFF2685	0.50	+0.2
2,706,471	-		GFF2685	0.50	+0.0
2,706,471	-		GFF2685	0.50	+0.6
2,706,482	-		GFF2685	0.54	-1.2
2,706,483	+		GFF2685	0.54	-0.2
2,706,491	-		GFF2685	0.56	-0.0
2,706,491	-		GFF2685	0.56	-2.7
2,706,497	-		GFF2685	0.58	-1.2
2,706,509	-		GFF2685	0.62	+0.2
2,706,510	+		GFF2685	0.62	+0.7
2,706,510	+		GFF2685	0.62	-0.3
2,706,511	-		GFF2685	0.63	-0.2
2,706,518	-		GFF2685	0.65	-0.0
2,706,518	-		GFF2685	0.65	+0.4
2,706,527	+		GFF2685	0.68	+1.1
2,706,527	+		GFF2685	0.68	-1.3
2,706,527	+		GFF2685	0.68	-1.2
2,706,527	+		GFF2685	0.68	-1.5
2,706,527	+		GFF2685	0.68	+1.1
2,706,535	-		GFF2685	0.70	-1.1
2,706,535	-		GFF2685	0.70	-1.5
2,706,537	+		GFF2685	0.71	-0.3
2,706,537	+		GFF2685	0.71	+0.6
2,706,537	+		GFF2685	0.71	-1.3
2,706,540	-		GFF2685	0.72	+0.7
2,706,542	+		GFF2685	0.72	+0.9
2,706,545	-		GFF2685	0.73	-1.1
2,706,545	-		GFF2685	0.73	-2.3
2,706,545	-		GFF2685	0.73	+0.1
2,706,561	+		GFF2685	0.78	+1.0
2,706,584	+		GFF2685	0.85	-0.1
2,706,586	-		GFF2685	0.86	+0.5
2,706,592	-		GFF2685	0.88	+2.7
2,706,648	+				+0.1
2,706,648	+				+0.6
2,706,660	+				+0.4
2,706,660	+				-0.1
2,706,660	+				+1.0
2,706,660	+				-0.7
2,706,663	-				-0.5
2,706,665	+				+0.3
2,706,665	+				-0.6
2,706,665	+				-0.7
2,706,665	+				-0.4
2,706,665	+				-2.0
2,706,665	+				+0.2
2,706,665	+				-2.0
2,706,668	-				-1.3
2,706,668	-				-0.0
2,706,668	-				-0.6
2,706,673	-				-1.3
2,706,673	-				-2.5
2,706,673	-				+0.2
2,706,673	-				-1.2
2,706,673	-				-0.6
2,706,700	+				-0.2
2,706,710	+				+1.4
2,706,710	+				-0.7
2,706,710	+				-2.0
2,706,713	+				-0.2
2,706,718	-				+0.9
2,706,729	+		GFF2686	0.11	-0.8
2,706,731	-		GFF2686	0.12	-0.0
2,706,736	-		GFF2686	0.13	-0.4
2,706,739	+		GFF2686	0.13	+1.0
2,706,743	+		GFF2686	0.14	-0.1
2,706,752	-		GFF2686	0.15	-0.4
2,706,761	+		GFF2686	0.17	+0.2
2,706,764	+		GFF2686	0.17	+1.1
2,706,767	-		GFF2686	0.18	+0.6
2,706,768	-		GFF2686	0.18	-0.9
2,706,769	-		GFF2686	0.18	+0.9
2,706,782	-		GFF2686	0.20	-0.0
2,706,788	-		GFF2686	0.21	+0.2
2,706,793	-		GFF2686	0.22	-0.0
2,706,798	+		GFF2686	0.23	+0.5
2,706,813	+		GFF2686	0.26	+0.1
2,706,816	-		GFF2686	0.26	+0.4
2,706,821	+		GFF2686	0.27	+0.3
2,706,835	-		GFF2686	0.29	-0.5
2,706,836	-		GFF2686	0.29	+1.6
2,706,845	-		GFF2686	0.31	-0.3
2,706,894	+		GFF2686	0.39	+0.8
2,706,894	+		GFF2686	0.39	+0.6
2,706,902	-		GFF2686	0.41	+0.8
2,706,907	-		GFF2686	0.41	-0.4
2,706,927	+		GFF2686	0.45	-2.3
2,706,935	-		GFF2686	0.46	-0.2
2,706,945	+		GFF2686	0.48	+0.1
2,706,953	-		GFF2686	0.49	+0.5
2,706,958	+		GFF2686	0.50	+0.7
2,706,971	+		GFF2686	0.52	-0.6
2,706,977	-		GFF2686	0.53	-1.7
2,706,978	+		GFF2686	0.53	-2.3
2,706,986	-		GFF2686	0.55	-0.9
2,706,986	-		GFF2686	0.55	+0.3
2,706,988	+		GFF2686	0.55	+0.9
2,706,991	-		GFF2686	0.56	+0.7
2,706,996	-		GFF2686	0.57	+0.8
2,707,017	+		GFF2686	0.60	-0.4
2,707,020	-		GFF2686	0.61	+0.4
2,707,020	-		GFF2686	0.61	+0.8
2,707,020	-		GFF2686	0.61	+0.1
2,707,022	+		GFF2686	0.61	-2.3
2,707,025	-		GFF2686	0.61	-0.3
2,707,025	-		GFF2686	0.61	-1.2
2,707,025	-		GFF2686	0.61	+0.2
2,707,044	+		GFF2686	0.65	+0.7
2,707,052	+		GFF2686	0.66	+1.3
2,707,056	+		GFF2686	0.67	+1.3
2,707,062	+		GFF2686	0.68	-0.5
2,707,062	+		GFF2686	0.68	+1.0
2,707,064	-		GFF2686	0.68	+1.3
2,707,064	-		GFF2686	0.68	+0.8
2,707,074	-		GFF2686	0.70	-1.4
2,707,080	+		GFF2686	0.71	-0.5
2,707,084	+		GFF2686	0.71	+1.1
2,707,084	+		GFF2686	0.71	+0.0
2,707,088	+		GFF2686	0.72	-2.3
2,707,088	-		GFF2686	0.72	-0.2
2,707,090	+		GFF2686	0.72	-0.5
2,707,094	-		GFF2686	0.73	-0.1
2,707,111	-		GFF2686	0.76	-0.6
2,707,146	+		GFF2686	0.82	+0.3
2,707,154	-		GFF2686	0.83	-1.0
2,707,154	-		GFF2686	0.83	+0.7
2,707,154	-		GFF2686	0.83	-2.3
2,707,154	-		GFF2686	0.83	+0.1
2,707,160	+		GFF2686	0.84	-2.8
2,707,160	+		GFF2686	0.84	-1.9
2,707,160	-		GFF2686	0.84	-1.5
2,707,165	-		GFF2686	0.85	+0.6
2,707,168	-		GFF2686	0.86	+0.6
2,707,178	+		GFF2686	0.87	+1.2
2,707,178	+		GFF2686	0.87	+0.2
2,707,181	+		GFF2686	0.88	-0.4
2,707,186	+		GFF2686	0.89	+0.9
2,707,186	+		GFF2686	0.89	-0.7
2,707,186	+		GFF2686	0.89	-1.6
2,707,186	+		GFF2686	0.89	-1.7
2,707,186	+		GFF2686	0.89	-1.5
2,707,194	-				+0.1
2,707,194	-				-0.7
2,707,194	-				-1.0
2,707,194	-				-0.4
2,707,194	-				+0.5
2,707,204	+				+0.5
2,707,204	+				+1.9
2,707,204	+				+0.8
2,707,204	+				+1.0
2,707,204	+				-1.3
2,707,204	+				-1.1
2,707,204	+				-0.5
2,707,204	+				-0.5
2,707,204	+				+0.2
2,707,209	+				+0.9
2,707,209	+				+0.0
2,707,209	+				-1.6
2,707,210	+				-0.4
2,707,211	+				-0.2
2,707,212	-				+0.5
2,707,212	-				+0.5
2,707,212	-				-0.5
2,707,212	-				+0.4
2,707,212	-				-0.0
2,707,212	-				+0.1
2,707,212	-				+0.3
2,707,212	-				-0.4
2,707,217	-				-2.4
2,707,233	+				+0.3
2,707,255	-				+0.1
2,707,255	-				+0.2
2,707,258	-				-0.5
2,707,266	+				-0.3
2,707,267	+				-1.4
2,707,267	+				-2.1
2,707,268	-				+0.4
2,707,270	-				+0.8
2,707,275	-				-0.2
2,707,275	-				+0.1
2,707,275	-				+0.5
2,707,312	+				-0.3
2,707,320	-		GFF2687	0.11	-0.1
2,707,320	-		GFF2687	0.11	+0.0
2,707,323	-		GFF2687	0.11	+0.3
2,707,324	-		GFF2687	0.11	-0.3
2,707,331	+		GFF2687	0.12	-1.9
2,707,394	-		GFF2687	0.22	+0.3
2,707,406	+		GFF2687	0.24	-0.0
2,707,408	-		GFF2687	0.24	-1.9
2,707,428	+		GFF2687	0.27	+1.0
2,707,444	-		GFF2687	0.30	+0.2
2,707,450	+		GFF2687	0.30	-0.5
2,707,458	+		GFF2687	0.32	+0.2
2,707,458	-		GFF2687	0.32	-2.0
2,707,460	+		GFF2687	0.32	+0.4
2,707,468	-		GFF2687	0.33	+0.1
2,707,468	-		GFF2687	0.33	-0.7
2,707,485	-		GFF2687	0.36	-1.3
2,707,505	-		GFF2687	0.39	-1.7
2,707,505	-		GFF2687	0.39	+0.1
2,707,506	-		GFF2687	0.39	+0.8
2,707,522	+		GFF2687	0.41	+1.0
2,707,522	+		GFF2687	0.41	-0.5
2,707,530	-		GFF2687	0.43	-1.6
2,707,554	+		GFF2687	0.46	-2.3
2,707,556	-		GFF2687	0.47	-0.9
2,707,567	-		GFF2687	0.48	-1.8
2,707,585	+		GFF2687	0.51	-1.4
2,707,605	-		GFF2687	0.54	+0.5