Strain Fitness in Sphingobium sp. HT1-2 around GFF2665

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,681,613	+				-0.9
2,681,629	+				+0.1
2,681,634	+				-0.1
2,681,641	+				-0.6
2,681,643	+				+0.5
2,681,643	+				+1.1
2,681,643	+				-0.4
2,681,643	+				+0.1
2,681,649	+				+0.8
2,681,649	+				+0.3
2,681,651	-				-0.8
2,681,651	-				-0.3
2,681,662	+				-0.1
2,681,674	+				+1.2
2,682,591	+				+0.5
2,682,594	-				-1.5
2,682,597	+				+0.3
2,682,597	+				+0.5
2,682,597	+				-0.7
2,682,597	+				-0.6
2,682,599	-				-0.8
2,682,600	-				+0.8
2,682,605	-				+0.5
2,682,605	-				-1.3
2,682,614	+				+0.3
2,682,633	+				-1.6
2,682,665	+				-0.7
2,682,673	-				+0.3
2,682,673	-				-0.9
2,682,678	+				-1.9
2,682,737	+		GFF2665	0.17	-0.7
2,682,745	-		GFF2665	0.18	-0.1
2,682,747	-		GFF2665	0.18	+2.1
2,682,777	+		GFF2665	0.22	-1.9
2,682,777	+		GFF2665	0.22	-2.1
2,682,785	-		GFF2665	0.23	+1.6
2,682,800	-		GFF2665	0.25	-1.6
2,682,846	+		GFF2665	0.31	+0.9
2,682,865	+		GFF2665	0.34	-0.3
2,682,869	+		GFF2665	0.34	-1.5
2,682,883	-		GFF2665	0.36	-1.2
2,682,914	-		GFF2665	0.40	-1.1
2,682,924	+		GFF2665	0.42	-0.0
2,682,944	-		GFF2665	0.44	-1.1
2,682,944	-		GFF2665	0.44	+1.1
2,682,968	+		GFF2665	0.47	+0.2
2,682,968	+		GFF2665	0.47	+1.2
2,683,066	-		GFF2665	0.60	+0.4
2,683,074	+		GFF2665	0.61	+0.8
2,683,074	-		GFF2665	0.61	+2.4
2,683,074	-		GFF2665	0.61	+1.4
2,683,108	+		GFF2665	0.66	-1.1
2,683,121	-		GFF2665	0.68	+0.1
2,683,126	+		GFF2665	0.68	+1.5
2,683,171	+		GFF2665	0.74	+1.0
2,683,172	-		GFF2665	0.74	-1.3
2,683,179	+		GFF2665	0.75	+0.6
2,683,187	-		GFF2665	0.76	+0.9
2,683,187	-		GFF2665	0.76	-1.8
2,683,198	-		GFF2665	0.78	-0.9
2,683,198	-		GFF2665	0.78	+0.2
2,683,205	+		GFF2665	0.79	-1.7
2,683,215	+		GFF2665	0.80	+0.5
2,683,235	+		GFF2665	0.83	-0.1
2,683,248	+		GFF2665	0.84	-1.7
2,683,248	+		GFF2665	0.84	-0.4
2,683,248	+		GFF2665	0.84	+0.6
2,683,248	+		GFF2665	0.84	-1.3
2,683,248	+		GFF2665	0.84	-1.1
2,683,256	-		GFF2665	0.85	-1.6
2,683,256	-		GFF2665	0.85	-1.8
2,683,256	-		GFF2665	0.85	-1.7
2,683,256	-		GFF2665	0.85	-0.4
2,683,256	-		GFF2665	0.85	-0.4
2,683,266	+		GFF2665	0.87	-0.4
2,683,337	+				+0.5
2,683,337	+				-1.7
2,683,337	+				-0.4
2,683,345	-				-0.2
2,683,345	-				+0.4
2,683,345	-				+2.3
2,683,347	+				-2.3
2,683,385	+				-0.8
2,683,393	-				-0.1
2,683,413	+				-1.6
2,683,421	-				+1.1
2,683,421	-				+1.1
2,683,421	-				+0.1
2,683,423	+				+0.5
2,683,423	+				+0.4
2,683,423	+				-0.3
2,683,423	+				-2.2
2,683,426	-				-1.2
2,683,426	-				-1.5
2,683,431	-				-1.2
2,683,431	-				-1.3
2,683,431	-				-0.8
2,683,431	-				-1.4
2,683,442	+		GFF2666	0.11	-1.5
2,683,442	+		GFF2666	0.11	+0.5
2,683,450	-		GFF2666	0.12	+0.3
2,683,451	+		GFF2666	0.12	+0.3
2,683,459	-		GFF2666	0.13	-0.2
2,683,459	-		GFF2666	0.13	-0.7
2,683,459	-		GFF2666	0.13	-1.7
2,683,461	+		GFF2666	0.13	-1.9
2,683,461	+		GFF2666	0.13	+0.4
2,683,461	+		GFF2666	0.13	-0.0
2,683,461	+		GFF2666	0.13	+1.1
2,683,461	+		GFF2666	0.13	-0.4
2,683,461	+		GFF2666	0.13	+0.5
2,683,461	+		GFF2666	0.13	-1.9
2,683,461	+		GFF2666	0.13	+0.5
2,683,461	+		GFF2666	0.13	+1.3
2,683,461	+		GFF2666	0.13	-2.4
2,683,461	+		GFF2666	0.13	+0.2
2,683,461	+		GFF2666	0.13	-0.2
2,683,461	+		GFF2666	0.13	+1.4
2,683,461	+		GFF2666	0.13	-0.6
2,683,461	+		GFF2666	0.13	+0.9
2,683,461	+		GFF2666	0.13	+0.8
2,683,461	+		GFF2666	0.13	-0.5
2,683,461	+		GFF2666	0.13	+0.5
2,683,461	+		GFF2666	0.13	+0.7
2,683,469	-		GFF2666	0.14	-1.2
2,683,469	-		GFF2666	0.14	+0.2
2,683,469	-		GFF2666	0.14	-0.1
2,683,469	-		GFF2666	0.14	-0.1
2,683,469	-		GFF2666	0.14	-0.1
2,683,469	-		GFF2666	0.14	-0.3
2,683,469	-		GFF2666	0.14	-2.1
2,683,469	-		GFF2666	0.14	-1.6
2,683,469	-		GFF2666	0.14	-0.0
2,683,469	-		GFF2666	0.14	-0.4
2,683,469	-		GFF2666	0.14	+0.1
2,683,469	-		GFF2666	0.14	-1.2
2,683,471	+		GFF2666	0.14	+0.2
2,683,528	+		GFF2666	0.20	+0.4
2,683,528	+		GFF2666	0.20	+0.2
2,683,528	+		GFF2666	0.20	-2.4
2,683,533	+		GFF2666	0.21	+0.2
2,683,536	-		GFF2666	0.21	+0.5
2,683,541	-		GFF2666	0.21	+0.5
2,683,541	-		GFF2666	0.21	+0.2
2,683,570	+		GFF2666	0.24	-0.4
2,683,574	+		GFF2666	0.25	-0.2
2,683,574	+		GFF2666	0.25	+0.1
2,683,574	+		GFF2666	0.25	-2.1
2,683,577	-		GFF2666	0.25	+1.9
2,683,593	-		GFF2666	0.27	+0.1
2,683,597	-		GFF2666	0.27	-1.9
2,683,600	-		GFF2666	0.28	-0.3
2,683,606	+		GFF2666	0.28	+0.5
2,683,607	-		GFF2666	0.28	-0.0
2,683,637	+		GFF2666	0.32	+2.4
2,683,660	+		GFF2666	0.34	-1.1
2,683,683	+		GFF2666	0.36	-0.1
2,683,683	+		GFF2666	0.36	+0.8
2,683,691	-		GFF2666	0.37	-0.7
2,683,698	+		GFF2666	0.38	-1.2
2,683,698	+		GFF2666	0.38	-1.8
2,683,698	+		GFF2666	0.38	+0.3
2,683,700	-		GFF2666	0.38	+1.2
2,683,703	+		GFF2666	0.39	-0.1
2,683,706	-		GFF2666	0.39	-0.5
2,683,706	-		GFF2666	0.39	+0.8
2,683,706	-		GFF2666	0.39	-0.3
2,683,706	-		GFF2666	0.39	+0.5
2,683,708	+		GFF2666	0.39	-0.1
2,683,711	-		GFF2666	0.39	-0.2
2,683,711	-		GFF2666	0.39	-2.2
2,683,711	-		GFF2666	0.39	+1.0
2,683,721	-		GFF2666	0.40	+0.1
2,683,721	-		GFF2666	0.40	-0.4
2,683,729	+		GFF2666	0.41	-0.2
2,683,731	+		GFF2666	0.41	-0.4
2,683,731	+		GFF2666	0.41	+1.3
2,683,767	+		GFF2666	0.45	-0.4
2,683,767	+		GFF2666	0.45	+0.0
2,683,767	+		GFF2666	0.45	-1.2
2,683,767	+		GFF2666	0.45	-1.2
2,683,767	+		GFF2666	0.45	-1.4
2,683,767	+		GFF2666	0.45	-0.9
2,683,775	-		GFF2666	0.46	+0.7
2,683,775	-		GFF2666	0.46	-0.1
2,683,775	-		GFF2666	0.46	-1.7
2,683,781	+		GFF2666	0.47	-0.0
2,683,781	+		GFF2666	0.47	-0.7
2,683,791	-		GFF2666	0.48	-2.2
2,683,803	-		GFF2666	0.49	-0.5
2,683,804	+		GFF2666	0.49	-0.9
2,683,846	+		GFF2666	0.54	-1.2
2,683,847	+		GFF2666	0.54	+0.3
2,683,855	-		GFF2666	0.55	+0.1
2,683,889	+		GFF2666	0.58	-0.0
2,683,897	-		GFF2666	0.59	-0.9
2,683,897	-		GFF2666	0.59	+0.5
2,683,899	+		GFF2666	0.59	-0.0
2,683,911	+		GFF2666	0.61	+1.3
2,683,911	+		GFF2666	0.61	+0.5
2,683,919	-		GFF2666	0.61	+0.3
2,683,919	-		GFF2666	0.61	+1.7
2,683,919	-		GFF2666	0.61	-0.3
2,683,921	+		GFF2666	0.62	-1.1
2,683,924	-		GFF2666	0.62	-0.4
2,683,924	-		GFF2666	0.62	-1.1
2,683,959	+		GFF2666	0.66	-0.4
2,683,959	+		GFF2666	0.66	-1.5
2,683,961	+		GFF2666	0.66	+0.5
2,683,964	-		GFF2666	0.66	+0.6
2,683,967	-		GFF2666	0.66	+0.9
2,683,967	-		GFF2666	0.66	+1.0
2,683,967	-		GFF2666	0.66	-0.8
2,683,969	+		GFF2666	0.67	-0.9
2,683,969	-		GFF2666	0.67	+0.9
2,683,969	-		GFF2666	0.67	-1.4
2,683,999	-		GFF2666	0.70	+0.2
2,683,999	-		GFF2666	0.70	+0.7
2,684,031	+		GFF2666	0.73	+0.0
2,684,040	+		GFF2666	0.74	+0.1
2,684,040	+		GFF2666	0.74	+0.9
2,684,048	-		GFF2666	0.75	+1.1
2,684,048	-		GFF2666	0.75	-1.6
2,684,056	+		GFF2666	0.76	-0.1
2,684,120	-		GFF2666	0.83	+0.2
2,684,131	+		GFF2666	0.84	+0.2
2,684,136	+		GFF2666	0.84	+0.3
2,684,136	+		GFF2666	0.84	-1.2
2,684,144	-		GFF2666	0.85	-1.4
2,684,144	-		GFF2666	0.85	-0.0
2,684,144	-		GFF2666	0.85	-0.6
2,684,144	-		GFF2666	0.85	-0.5
2,684,168	+		GFF2666	0.88	+0.1
2,684,181	+		GFF2666	0.89	-0.3
2,684,191	+				-0.5
2,684,199	-				+0.3
2,684,199	-				+1.3
2,684,199	-				-0.9
2,684,200	+				-0.1
2,684,200	+				-1.3
2,684,213	-				+0.1
2,684,217	+				-0.1
2,684,225	+				-1.0
2,684,227	-				-1.5
2,684,238	+				-1.5
2,684,244	+				-0.8
2,684,253	-				-0.8
2,684,271	+				+0.5
2,684,271	+				+0.1
2,684,271	+				-0.2
2,684,271	+				+0.4
2,684,279	-				-1.2
2,684,279	-				+1.2
2,684,281	+				-0.9
2,684,289	-				+0.2
2,684,303	+				+0.9
2,684,303	+				+0.0
2,684,308	+				-2.4
2,684,311	-				+1.2
2,684,312	-				-0.4
2,684,313	+				+0.5
2,684,321	-				+0.7
2,684,326	+				-0.3
2,684,327	+				-1.1
2,684,343	+				+0.4
2,684,343	+				-0.7
2,684,351	-				+0.8
2,684,351	-				-0.5
2,684,353	+				-0.4