Strain Fitness in Sphingobium sp. HT1-2 around GFF2660

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,677,806	-				-0.9
2,677,834	+				+0.9
2,677,839	+				-0.7
2,677,842	-				-0.5
2,677,847	-				+1.3
2,677,847	-				-1.1
2,677,861	-				-0.0
2,677,872	+				+0.5
2,677,872	+				+0.4
2,677,873	+				+0.5
2,677,880	-				+0.0
2,677,880	-				-2.2
2,677,907	+				-0.0
2,677,907	-				+0.9
2,677,910	-				-0.6
2,677,910	-				-0.0
2,677,915	-				-0.3
2,677,918	+				+0.8
2,677,935	+				+0.1
2,677,940	-				-0.5
2,677,941	+				-0.4
2,677,999	+		GFF2659	0.19	+0.2
2,677,999	+		GFF2659	0.19	+0.2
2,677,999	+		GFF2659	0.19	-0.0
2,678,007	-		GFF2659	0.20	-1.4
2,678,007	-		GFF2659	0.20	-0.8
2,678,007	-		GFF2659	0.20	+0.5
2,678,007	-		GFF2659	0.20	-0.6
2,678,009	+		GFF2659	0.20	+1.2
2,678,009	+		GFF2659	0.20	-1.2
2,678,017	-		GFF2659	0.22	+0.6
2,678,017	-		GFF2659	0.22	+0.2
2,678,017	-		GFF2659	0.22	-1.7
2,678,030	-		GFF2659	0.24	+0.9
2,678,032	-		GFF2659	0.24	+0.0
2,678,036	-		GFF2659	0.25	-0.7
2,678,080	-		GFF2659	0.32	-0.8
2,678,082	+		GFF2659	0.33	-0.0
2,678,087	+		GFF2659	0.34	+0.4
2,678,090	-		GFF2659	0.34	-0.3
2,678,092	+		GFF2659	0.34	+0.8
2,678,092	+		GFF2659	0.34	+0.7
2,678,092	+		GFF2659	0.34	-1.4
2,678,100	-		GFF2659	0.36	+0.1
2,678,100	-		GFF2659	0.36	-0.6
2,678,100	-		GFF2659	0.36	+0.0
2,678,100	-		GFF2659	0.36	-0.4
2,678,100	-		GFF2659	0.36	-1.7
2,678,100	-		GFF2659	0.36	+0.6
2,678,100	-		GFF2659	0.36	-0.8
2,678,100	-		GFF2659	0.36	-0.3
2,678,105	-		GFF2659	0.37	-0.1
2,678,127	+		GFF2659	0.40	+1.3
2,678,127	+		GFF2659	0.40	-0.1
2,678,162	+		GFF2659	0.46	-2.3
2,678,174	+		GFF2659	0.48	+0.6
2,678,174	+		GFF2659	0.48	-1.2
2,678,174	-		GFF2659	0.48	-1.2
2,678,174	-		GFF2659	0.48	+1.1
2,678,262	+		GFF2659	0.63	-1.6
2,678,266	+		GFF2659	0.64	+0.1
2,678,267	+		GFF2659	0.64	-1.9
2,678,280	+		GFF2659	0.66	-0.2
2,678,288	-		GFF2659	0.68	+1.0
2,678,288	-		GFF2659	0.68	-0.6
2,678,307	-		GFF2659	0.71	-0.1
2,678,329	+		GFF2659	0.74	-0.0
2,678,334	+		GFF2659	0.75	-0.2
2,678,342	+		GFF2659	0.77	+0.5
2,678,342	+		GFF2659	0.77	-1.1
2,678,342	+		GFF2659	0.77	-0.1
2,678,342	+		GFF2659	0.77	+1.1
2,678,342	-		GFF2659	0.77	-0.4
2,678,344	+		GFF2659	0.77	-0.1
2,678,344	+		GFF2659	0.77	+0.2
2,678,350	-		GFF2659	0.78	-1.0
2,678,373	+		GFF2659	0.82	-0.4
2,678,381	-		GFF2659	0.83	+0.4
2,678,381	-		GFF2659	0.83	+0.8
2,678,390	+		GFF2659	0.85	-1.2
2,678,390	+		GFF2659	0.85	-0.3
2,678,391	+		GFF2659	0.85	+1.5
2,678,398	+		GFF2659	0.86	-0.4
2,678,398	-		GFF2659	0.86	+0.2
2,678,414	-		GFF2659	0.89	-0.8
2,678,435	+				+1.1
2,678,435	+				-1.7
2,678,447	+				-0.1
2,678,447	+				+0.1
2,678,447	+				+0.1
2,678,447	+				+1.0
2,678,447	+				-0.5
2,678,448	-				-0.1
2,678,519	+				-0.3
2,678,527	-				+0.7
2,678,529	+				+0.2
2,678,537	-				+0.6
2,678,537	-				-0.7
2,678,537	-				-0.2
2,678,558	-				-1.1
2,678,561	-				+0.9
2,678,584	+				-0.4
2,678,585	-				+0.7
2,678,591	+				-1.6
2,678,592	-				-0.1
2,678,599	-				-0.4
2,678,600	+				-1.8
2,678,600	+				+0.4
2,678,600	+				-1.9
2,678,600	+				-0.0
2,678,608	-				-0.6
2,678,609	-				+0.3
2,678,611	+				-0.8
2,678,611	+				+0.4
2,678,611	+				-0.7
2,678,611	+				-0.4
2,678,611	+				+0.2
2,678,619	-				+0.3
2,678,619	-				+2.2
2,678,619	-				+0.4
2,678,619	-				+1.6
2,678,619	-				-2.1
2,678,619	-				-0.5
2,678,619	-				-2.1
2,678,629	-				-0.4
2,678,634	-				+1.3
2,678,634	-				-0.4
2,678,638	+				-1.1
2,678,643	+				+0.2
2,678,643	+				-1.7
2,678,643	+				-1.1
2,678,643	+				-1.3
2,678,647	-				+0.3
2,678,648	+				+0.9
2,678,651	-				-1.2
2,678,651	-				-0.6
2,678,651	-				+0.8
2,678,678	+				+0.5
2,678,681	+		GFF2660	0.10	-0.1
2,678,704	-		GFF2660	0.12	-0.4
2,678,723	+		GFF2660	0.13	-0.1
2,678,725	+		GFF2660	0.14	+1.2
2,678,725	+		GFF2660	0.14	+0.2
2,678,733	-		GFF2660	0.14	+0.8
2,678,739	+		GFF2660	0.15	-2.3
2,678,747	-		GFF2660	0.15	-1.3
2,678,754	+		GFF2660	0.16	-0.1
2,678,769	+		GFF2660	0.17	-0.1
2,678,817	+		GFF2660	0.21	-1.4
2,678,824	+		GFF2660	0.22	-1.3
2,678,825	+		GFF2660	0.22	-0.9
2,678,825	+		GFF2660	0.22	-0.3
2,678,832	-		GFF2660	0.22	-0.4
2,678,832	-		GFF2660	0.22	-1.7
2,678,832	-		GFF2660	0.22	-0.5
2,678,833	-		GFF2660	0.22	-0.3
2,678,833	-		GFF2660	0.22	-2.1
2,678,833	-		GFF2660	0.22	-0.6
2,678,834	-		GFF2660	0.23	-0.4
2,678,834	-		GFF2660	0.23	-2.9
2,678,849	-		GFF2660	0.24	+0.7
2,678,849	-		GFF2660	0.24	-0.2
2,678,851	+		GFF2660	0.24	-0.9
2,678,860	+		GFF2660	0.25	-0.9
2,678,865	-		GFF2660	0.25	-0.2
2,678,868	-		GFF2660	0.25	+0.5
2,678,877	+		GFF2660	0.26	-0.7
2,678,879	+		GFF2660	0.26	-1.6
2,678,889	+		GFF2660	0.27	-0.3
2,678,892	-		GFF2660	0.27	-1.8
2,678,908	+		GFF2660	0.29	+0.5
2,678,973	+		GFF2660	0.34	+0.7
2,678,978	+		GFF2660	0.34	-0.1
2,678,978	+		GFF2660	0.34	+0.2
2,678,983	+		GFF2660	0.35	+0.4
2,678,983	+		GFF2660	0.35	-2.7
2,678,983	+		GFF2660	0.35	-0.2
2,678,986	-		GFF2660	0.35	-0.9
2,678,991	-		GFF2660	0.35	-0.0
2,678,991	-		GFF2660	0.35	-0.6
2,678,991	-		GFF2660	0.35	+1.4
2,678,996	+		GFF2660	0.36	-1.8
2,678,996	+		GFF2660	0.36	-0.6
2,679,004	-		GFF2660	0.36	-0.7
2,679,011	+		GFF2660	0.37	+0.2
2,679,011	+		GFF2660	0.37	-0.5
2,679,019	-		GFF2660	0.38	+0.3
2,679,019	-		GFF2660	0.38	+0.4
2,679,019	-		GFF2660	0.38	-1.0
2,679,034	-		GFF2660	0.39	-1.4
2,679,040	+		GFF2660	0.39	+0.7
2,679,040	+		GFF2660	0.39	+0.7
2,679,060	+		GFF2660	0.41	-1.5
2,679,060	+		GFF2660	0.41	-2.2
2,679,080	-		GFF2660	0.43	-0.7
2,679,106	+		GFF2660	0.45	+0.5
2,679,106	+		GFF2660	0.45	-0.5
2,679,106	+		GFF2660	0.45	-1.4
2,679,106	+		GFF2660	0.45	+0.7
2,679,106	+		GFF2660	0.45	+0.2
2,679,109	-		GFF2660	0.45	+1.1
2,679,114	-		GFF2660	0.45	+1.6
2,679,114	-		GFF2660	0.45	-1.1
2,679,114	-		GFF2660	0.45	-1.2
2,679,115	-		GFF2660	0.46	+0.8
2,679,116	-		GFF2660	0.46	-1.4
2,679,136	+		GFF2660	0.47	+0.3
2,679,144	-		GFF2660	0.48	-1.1
2,679,195	+		GFF2660	0.52	-1.9
2,679,227	+		GFF2660	0.55	-1.4
2,679,239	+		GFF2660	0.56	-0.4
2,679,257	-		GFF2660	0.57	-1.1
2,679,262	-		GFF2660	0.58	+0.7
2,679,277	+		GFF2660	0.59	-1.6
2,679,279	+		GFF2660	0.59	+0.9
2,679,279	+		GFF2660	0.59	+0.9
2,679,281	-		GFF2660	0.59	-2.1
2,679,281	-		GFF2660	0.59	-0.3
2,679,284	+		GFF2660	0.59	+0.4
2,679,301	-		GFF2660	0.61	+0.6
2,679,301	-		GFF2660	0.61	-0.2
2,679,316	+		GFF2660	0.62	-0.4
2,679,329	-		GFF2660	0.63	+0.5
2,679,393	+		GFF2660	0.68	-0.6
2,679,393	+		GFF2660	0.68	-0.4
2,679,394	-		GFF2660	0.68	-1.1
2,679,442	+		GFF2660	0.72	-0.7
2,679,443	+		GFF2660	0.72	+0.0
2,679,443	+		GFF2660	0.72	-1.4
2,679,451	-		GFF2660	0.73	-0.3
2,679,451	-		GFF2660	0.73	-0.8
2,679,451	-		GFF2660	0.73	-0.3
2,679,454	+		GFF2660	0.73	+0.4
2,679,454	+		GFF2660	0.73	-0.5
2,679,454	+		GFF2660	0.73	-0.7
2,679,462	+		GFF2660	0.74	-0.3
2,679,462	+		GFF2660	0.74	-1.1
2,679,462	+		GFF2660	0.74	+0.6
2,679,462	+		GFF2660	0.74	+1.2
2,679,462	-		GFF2660	0.74	+0.7
2,679,470	-		GFF2660	0.75	-1.1
2,679,470	-		GFF2660	0.75	+0.6
2,679,473	+		GFF2660	0.75	-0.1
2,679,495	+		GFF2660	0.77	+0.6
2,679,495	+		GFF2660	0.77	+0.3
2,679,508	+		GFF2660	0.78	+0.4
2,679,516	-		GFF2660	0.78	-0.6
2,679,516	-		GFF2660	0.78	+0.9
2,679,517	+		GFF2660	0.78	+1.2
2,679,565	+		GFF2660	0.82	-0.7
2,679,566	+		GFF2660	0.82	+0.1
2,679,581	-		GFF2660	0.84	-0.1
2,679,590	-		GFF2660	0.84	+0.3
2,679,592	-		GFF2660	0.84	+1.3
2,679,604	+		GFF2660	0.85	+0.4
2,679,609	+		GFF2660	0.86	+0.7
2,679,609	+		GFF2660	0.86	-0.6
2,679,614	+		GFF2660	0.86	-0.2
2,679,614	+		GFF2660	0.86	+0.1
2,679,614	+		GFF2660	0.86	-1.7
2,679,617	-		GFF2660	0.87	+0.4
2,679,617	-		GFF2660	0.87	-1.8
2,679,617	-		GFF2660	0.87	-0.6
2,679,619	+		GFF2660	0.87	-0.4
2,679,631	-		GFF2660	0.88	+0.4
2,679,636	-		GFF2660	0.88	-0.6
2,679,636	-		GFF2660	0.88	-0.4
2,679,653	-		GFF2660	0.89	-1.6
2,679,678	+				-0.5
2,679,678	+				+1.1
2,679,685	+				+0.3
2,679,686	-				-1.4
2,679,693	-				+1.0
2,679,696	-				-1.3
2,679,708	+				+1.4
2,679,709	+				-0.2
2,679,709	+				+0.0
2,679,709	+				+0.4
2,679,709	+				-2.4
2,679,710	+				+1.0
2,679,718	-				-1.1
2,679,718	-				-0.9
2,679,718	-				-0.5
2,679,728	+				-0.3
2,679,733	+				-0.1
2,679,733	+				+0.3
2,679,733	+				-1.0
2,679,741	-				-0.1
2,679,741	-				-1.4
2,679,741	-				+0.7
2,679,741	-				+0.1
2,679,741	-				-0.6
2,679,753	-				-0.2
2,679,753	-				-1.6
2,679,771	-				-0.2
2,679,771	-				-0.0
2,679,782	+				-0.6
2,679,789	+				-0.6
2,679,789	+				+0.4
2,679,789	+				+0.6
2,679,789	+				-1.0
2,679,789	+				-1.1
2,679,797	-				+0.4
2,679,797	-				+0.6
2,679,797	-				+0.1
2,679,797	-				+0.2
2,679,808	-				+0.9
2,679,808	-				-1.0
2,679,811	+				+0.7
2,679,811	+				-0.5
2,679,919	+		GFF2661	0.42	+0.5
2,679,919	+		GFF2661	0.42	+0.1
2,679,921	-		GFF2661	0.42	-1.5
2,679,932	-		GFF2661	0.45	-1.4
2,679,932	-		GFF2661	0.45	-2.5
2,679,932	-		GFF2661	0.45	+1.0
2,679,935	+		GFF2661	0.46	+0.3
2,679,937	-		GFF2661	0.47	-0.1
2,679,951	-		GFF2661	0.51	+1.4
2,679,980	-		GFF2661	0.60	-0.1
2,679,983	+		GFF2661	0.60	-1.8
2,679,983	+		GFF2661	0.60	-0.7
2,679,989	+		GFF2661	0.62	+0.2
2,679,991	-		GFF2661	0.63	+0.5
2,679,997	-		GFF2661	0.65	-0.6
2,679,998	+		GFF2661	0.65	-1.9
2,679,998	+		GFF2661	0.65	-0.6
2,680,003	+		GFF2661	0.66	+1.1
2,680,003	+		GFF2661	0.66	-1.4
2,680,006	-		GFF2661	0.67	-0.6
2,680,011	-		GFF2661	0.69	-0.5
2,680,011	-		GFF2661	0.69	-1.3
2,680,011	-		GFF2661	0.69	-1.3
2,680,011	-		GFF2661	0.69	-0.8
2,680,024	-		GFF2661	0.73	+1.0
2,680,028	-		GFF2661	0.74	-0.1
2,680,038	+		GFF2661	0.77	+1.8
2,680,038	+		GFF2661	0.77	+0.7
2,680,049	+		GFF2661	0.80	-0.4
2,680,058	-		GFF2661	0.83	-0.6
2,680,088	-				-1.2
2,680,101	-				-0.2
2,680,101	-				+0.5
2,680,112	+				+0.2
2,680,118	-				-0.4
2,680,120	+				+0.2
2,680,120	-				-1.1
2,680,123	-				+1.4
2,680,133	+				-0.0
2,680,133	-				-0.1
2,680,148	-				+0.1
2,680,171	+				-0.5
2,680,171	+				+0.2
2,680,188	+				+0.5
2,680,196	-				-0.8
2,680,223	-				-0.6
2,680,235	-				-1.2
2,680,245	-				-0.6
2,680,247	-				+1.0
2,680,256	-				+0.4
2,680,256	-				-0.3
2,680,256	-				-1.3
2,680,256	-				+0.2
2,680,256	-				+0.4
2,680,256	-				+0.6
2,680,256	-				+0.2
2,680,256	-				-2.6
2,680,256	-				-0.8
2,680,256	-				-1.1
2,680,256	-				-0.5
2,680,256	-				+0.9
2,680,256	-				-0.6
2,680,256	-				-0.7
2,680,256	-				-0.1
2,680,263	-				-1.3
2,680,268	+				-0.2
2,680,312	+				+0.3
2,680,312	+				-1.8
2,680,337	+				+0.8
2,680,343	-				-0.6
2,680,345	-				+0.2
2,680,345	-				+0.2
2,680,347	+				-1.1
2,680,348	-				+0.5
2,680,353	-				-0.6
2,680,380	-				+0.5
2,680,394	-				-0.2
2,680,399	+				+0.1
2,680,407	-				+1.5
2,680,407	-				+0.4
2,680,407	-				+0.9
2,680,413	+				-2.3
2,680,425	-				+0.9
2,680,432	+				-0.4
2,680,432	+				-0.2
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