Strain Fitness in Sphingobium sp. HT1-2 around GFF2599

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,614,473	+		GFF2598	0.31	-0.2
2,614,481	-		GFF2598	0.31	-1.2
2,614,481	-		GFF2598	0.31	-0.2
2,614,491	-		GFF2598	0.32	-0.8
2,614,491	-		GFF2598	0.32	-1.1
2,614,497	-		GFF2598	0.32	-0.3
2,614,512	+		GFF2598	0.33	-0.5
2,614,520	-		GFF2598	0.34	-0.9
2,614,520	-		GFF2598	0.34	+0.5
2,614,520	-		GFF2598	0.34	+0.2
2,614,520	-		GFF2598	0.34	-1.3
2,614,520	-		GFF2598	0.34	+0.5
2,614,522	+		GFF2598	0.34	+1.2
2,614,531	-		GFF2598	0.35	-0.1
2,614,543	-		GFF2598	0.36	+0.2
2,614,543	-		GFF2598	0.36	-1.7
2,614,557	+		GFF2598	0.37	-2.1
2,614,565	-		GFF2598	0.37	-0.7
2,614,568	+		GFF2598	0.37	+0.3
2,614,573	+		GFF2598	0.38	-1.7
2,614,576	-		GFF2598	0.38	-0.3
2,614,578	+		GFF2598	0.38	-1.6
2,614,588	-		GFF2598	0.39	-0.8
2,614,623	-		GFF2598	0.41	-1.5
2,614,637	+		GFF2598	0.42	-0.2
2,614,638	-		GFF2598	0.42	+0.2
2,614,657	+		GFF2598	0.43	-1.2
2,614,659	+		GFF2598	0.44	-1.6
2,614,659	+		GFF2598	0.44	-2.0
2,614,660	-		GFF2598	0.44	-0.7
2,614,664	+		GFF2598	0.44	-0.1
2,614,667	-		GFF2598	0.44	-0.6
2,614,667	-		GFF2598	0.44	-1.9
2,614,669	+		GFF2598	0.44	-1.2
2,614,671	-		GFF2598	0.44	-0.1
2,614,677	-		GFF2598	0.45	-3.4
2,614,677	-		GFF2598	0.45	-3.2
2,614,677	-		GFF2598	0.45	-0.4
2,614,683	+		GFF2598	0.45	-0.3
2,614,738	+		GFF2598	0.49	-2.2
2,614,738	+		GFF2598	0.49	-1.8
2,614,738	+		GFF2598	0.49	+0.0
2,614,738	+		GFF2598	0.49	-0.6
2,614,743	+		GFF2598	0.49	-1.5
2,614,746	-		GFF2598	0.50	-1.5
2,614,746	-		GFF2598	0.50	+0.1
2,614,746	-		GFF2598	0.50	+0.3
2,614,751	-		GFF2598	0.50	-2.0
2,614,781	-		GFF2598	0.52	-0.5
2,614,810	+		GFF2598	0.54	-0.5
2,614,818	-		GFF2598	0.55	+0.4
2,614,818	-		GFF2598	0.55	-0.3
2,614,842	+		GFF2598	0.56	+0.0
2,614,850	-		GFF2598	0.57	-1.5
2,614,873	-		GFF2598	0.58	+0.1
2,614,882	+		GFF2598	0.59	+0.6
2,614,882	+		GFF2598	0.59	-0.8
2,614,882	+		GFF2598	0.59	+0.8
2,614,882	+		GFF2598	0.59	-1.4
2,614,882	+		GFF2598	0.59	-1.0
2,614,882	+		GFF2598	0.59	-1.4
2,614,882	+		GFF2598	0.59	-1.3
2,614,882	+		GFF2598	0.59	-0.5
2,614,882	+		GFF2598	0.59	-0.8
2,614,882	+		GFF2598	0.59	-2.2
2,614,882	+		GFF2598	0.59	-1.2
2,614,882	+		GFF2598	0.59	+0.6
2,614,882	+		GFF2598	0.59	-0.1
2,614,882	+		GFF2598	0.59	-1.2
2,614,882	+		GFF2598	0.59	-1.4
2,614,882	+		GFF2598	0.59	-1.4
2,614,882	+		GFF2598	0.59	-1.7
2,614,882	+		GFF2598	0.59	+1.3
2,614,889	+		GFF2598	0.59	-0.7
2,614,890	-		GFF2598	0.59	-1.3
2,614,890	-		GFF2598	0.59	-0.5
2,614,890	-		GFF2598	0.59	+1.4
2,614,890	-		GFF2598	0.59	-2.6
2,614,890	-		GFF2598	0.59	-1.6
2,614,890	-		GFF2598	0.59	-1.2
2,614,890	-		GFF2598	0.59	+1.0
2,614,890	-		GFF2598	0.59	-1.4
2,614,890	-		GFF2598	0.59	-1.6
2,614,890	-		GFF2598	0.59	-2.3
2,614,890	-		GFF2598	0.59	+0.7
2,614,890	-		GFF2598	0.59	+0.0
2,614,890	-		GFF2598	0.59	-0.0
2,614,890	-		GFF2598	0.59	-1.0
2,614,890	-		GFF2598	0.59	-0.1
2,614,890	-		GFF2598	0.59	-0.6
2,614,890	-		GFF2598	0.59	+1.2
2,614,890	-		GFF2598	0.59	-0.2
2,614,890	-		GFF2598	0.59	-0.5
2,614,890	-		GFF2598	0.59	-1.3
2,614,890	-		GFF2598	0.59	+0.8
2,614,890	-		GFF2598	0.59	-0.9
2,614,928	-		GFF2598	0.62	+0.6
2,614,975	-		GFF2598	0.65	-3.1
2,614,987	-		GFF2598	0.66	+0.9
2,614,988	+		GFF2598	0.66	-1.1
2,614,988	+		GFF2598	0.66	-1.5
2,615,035	+		GFF2598	0.69	-1.4
2,615,085	+		GFF2598	0.73	-1.9
2,615,121	+		GFF2598	0.75	-0.9
2,615,130	+		GFF2598	0.76	-2.6
2,615,130	+		GFF2598	0.76	-1.0
2,615,130	+		GFF2598	0.76	+0.5
2,615,138	-		GFF2598	0.77	-0.2
2,615,140	+		GFF2598	0.77	-0.4
2,615,148	-		GFF2598	0.77	-1.5
2,615,155	+		GFF2598	0.78	-0.7
2,615,159	-		GFF2598	0.78	-1.1
2,615,196	+		GFF2598	0.81	-1.9
2,615,204	+		GFF2598	0.81	-1.6
2,615,204	+		GFF2598	0.81	-1.3
2,615,204	-		GFF2598	0.81	-1.2
2,615,212	-		GFF2598	0.82	-1.6
2,615,228	+		GFF2598	0.83	-0.1
2,615,236	-		GFF2598	0.83	-2.7
2,615,236	-		GFF2598	0.83	-1.4
2,615,260	+		GFF2598	0.85	-2.1
2,615,298	+		GFF2598	0.88	-0.3
2,615,303	+		GFF2598	0.88	-0.1
2,615,306	-		GFF2598	0.88	+1.0
2,615,308	+		GFF2598	0.88	-0.3
2,615,313	+		GFF2598	0.89	-0.2
2,615,318	+		GFF2598	0.89	-0.0
2,615,318	+		GFF2598	0.89	-0.7
2,615,318	+		GFF2598	0.89	-1.8
2,615,318	+		GFF2598	0.89	-0.2
2,615,326	-		GFF2598	0.90	-1.1
2,615,332	+				-1.0
2,615,340	-				+0.3
2,615,342	+				+0.5
2,615,342	+				+0.1
2,615,342	+				-0.6
2,615,342	+				+0.5
2,615,342	+				-0.4
2,615,342	+				-0.3
2,615,342	+				+1.1
2,615,342	+				-1.6
2,615,342	+				+0.0
2,615,342	+				-0.5
2,615,342	+				-1.5
2,615,342	+				+0.8
2,615,342	+				-0.1
2,615,350	-				-0.3
2,615,350	-				-0.1
2,615,350	-				-0.2
2,615,350	-				-0.5
2,615,350	-				-0.4
2,615,350	-				-0.6
2,615,350	-				+0.1
2,615,350	-				-1.2
2,615,350	-				-0.0
2,615,350	-				-1.9
2,615,352	+				-0.4
2,615,352	+				-0.2
2,615,359	-				+0.8
2,615,360	-				-0.6
2,615,360	-				-0.5
2,615,360	-				-2.7
2,615,360	-				-0.2
2,615,360	-				+0.1
2,615,393	+				-1.8
2,615,396	-				-1.8
2,615,459	+				-1.3
2,615,464	+				-0.1
2,615,470	-				+0.2
2,615,472	-				+0.5
2,615,479	-				+1.3
2,615,482	-				-1.3
2,615,492	-				-1.2
2,615,519	+				-1.0
2,615,527	-				-0.2
2,615,527	-				-0.4
2,615,528	+				+0.1
2,615,528	+				-2.2
2,615,528	+				+0.1
2,615,528	+				-1.4
2,615,536	-				+1.6
2,615,536	-				-0.0
2,615,543	+				-0.7
2,615,551	-				-1.3
2,615,551	-				-0.8
2,615,556	-				-1.4
2,615,591	+				-1.7
2,615,591	+				-0.1
2,615,591	+				+0.4
2,615,591	+				+0.0
2,615,591	+				+0.4
2,615,598	-				-0.6
2,615,599	-				+1.6
2,615,599	-				+0.0
2,615,599	-				+0.8
2,615,599	-				-0.4
2,615,633	+				-2.4
2,615,633	+				+0.7
2,615,641	-				+0.7
2,615,641	-				-1.2
2,615,652	-		GFF2599	0.10	-1.2
2,615,657	-		GFF2599	0.11	-1.6
2,615,674	+		GFF2599	0.12	-0.2
2,615,682	-		GFF2599	0.12	-0.1
2,615,689	-		GFF2599	0.12	+0.6
2,615,711	-		GFF2599	0.14	+0.1
2,615,747	-		GFF2599	0.16	-0.4
2,615,785	-		GFF2599	0.18	-1.7
2,615,791	+		GFF2599	0.18	-0.2
2,615,798	+		GFF2599	0.19	+0.4
2,615,816	+		GFF2599	0.20	-1.5
2,615,849	+		GFF2599	0.22	-2.1
2,615,872	+		GFF2599	0.23	-0.6
2,615,926	+		GFF2599	0.26	-2.7
2,615,956	+		GFF2599	0.28	-0.7
2,615,964	-		GFF2599	0.28	-1.3
2,615,976	+		GFF2599	0.29	-0.7
2,615,985	+		GFF2599	0.29	-2.3
2,615,990	+		GFF2599	0.30	+0.8
2,615,992	+		GFF2599	0.30	-0.3
2,616,000	-		GFF2599	0.30	-0.1
2,616,000	-		GFF2599	0.30	-0.8
2,616,000	-		GFF2599	0.30	-1.0
2,616,000	-		GFF2599	0.30	-0.6
2,616,002	+		GFF2599	0.30	+0.1
2,616,002	+		GFF2599	0.30	-0.5
2,616,002	+		GFF2599	0.30	-0.1
2,616,003	-		GFF2599	0.31	-2.2
2,616,005	-		GFF2599	0.31	-1.7
2,616,010	-		GFF2599	0.31	-1.5
2,616,010	-		GFF2599	0.31	-1.2
2,616,010	-		GFF2599	0.31	-1.1
2,616,026	+		GFF2599	0.32	-0.6
2,616,034	-		GFF2599	0.32	-0.5
2,616,037	+		GFF2599	0.32	-2.3
2,616,052	-		GFF2599	0.33	-0.4
2,616,082	+		GFF2599	0.35	-0.4
2,616,108	+		GFF2599	0.37	-0.1
2,616,116	-		GFF2599	0.37	-0.1
2,616,127	+		GFF2599	0.38	-0.8
2,616,130	-		GFF2599	0.38	-1.2
2,616,135	-		GFF2599	0.38	+0.9
2,616,165	-		GFF2599	0.40	-1.5
2,616,184	-		GFF2599	0.41	-1.4
2,616,185	+		GFF2599	0.41	-1.6
2,616,194	-		GFF2599	0.42	-0.6
2,616,194	-		GFF2599	0.42	-3.0
2,616,254	+		GFF2599	0.45	-2.2
2,616,260	+		GFF2599	0.45	-0.2
2,616,264	+		GFF2599	0.46	-0.4
2,616,272	-		GFF2599	0.46	+0.2
2,616,284	+		GFF2599	0.47	-0.3
2,616,284	+		GFF2599	0.47	-1.0
2,616,286	+		GFF2599	0.47	-2.2
2,616,286	+		GFF2599	0.47	-1.0
2,616,286	+		GFF2599	0.47	-1.7
2,616,286	+		GFF2599	0.47	-1.0
2,616,291	+		GFF2599	0.47	-0.8
2,616,294	-		GFF2599	0.47	-1.8
2,616,294	-		GFF2599	0.47	-1.6
2,616,294	-		GFF2599	0.47	-0.8
2,616,294	-		GFF2599	0.47	-1.7
2,616,294	-		GFF2599	0.47	-1.1
2,616,312	-		GFF2599	0.48	+0.0
2,616,340	+		GFF2599	0.50	-1.1
2,616,358	-		GFF2599	0.51	-0.4
2,616,419	+		GFF2599	0.54	-1.5
2,616,419	+		GFF2599	0.54	-1.0
2,616,419	+		GFF2599	0.54	-1.6
2,616,419	+		GFF2599	0.54	-2.4
2,616,419	+		GFF2599	0.54	+1.2
2,616,419	+		GFF2599	0.54	-0.8
2,616,427	-		GFF2599	0.55	-0.2
2,616,447	+		GFF2599	0.56	-0.2
2,616,447	+		GFF2599	0.56	+0.2
2,616,475	+		GFF2599	0.58	-0.1
2,616,498	+		GFF2599	0.59	-2.2
2,616,506	-		GFF2599	0.59	-0.5
2,616,512	+		GFF2599	0.60	+0.2
2,616,534	+		GFF2599	0.61	-0.5
2,616,540	+		GFF2599	0.61	-1.3
2,616,555	+		GFF2599	0.62	-2.1
2,616,560	+		GFF2599	0.63	-1.7
2,616,568	-		GFF2599	0.63	-1.1
2,616,575	+		GFF2599	0.63	-0.6
2,616,597	+		GFF2599	0.65	+0.7
2,616,600	-		GFF2599	0.65	-0.9
2,616,617	+		GFF2599	0.66	-1.5
2,616,624	+		GFF2599	0.66	-0.4
2,616,624	+		GFF2599	0.66	-1.2
2,616,625	-		GFF2599	0.66	-2.6
2,616,625	-		GFF2599	0.66	-2.0
2,616,655	+		GFF2599	0.68	-1.2
2,616,655	+		GFF2599	0.68	-0.9
2,616,655	+		GFF2599	0.68	-1.7
2,616,655	+		GFF2599	0.68	-0.1
2,616,660	+		GFF2599	0.68	-2.7
2,616,663	-		GFF2599	0.69	-0.5
2,616,663	-		GFF2599	0.69	-1.6
2,616,732	-		GFF2599	0.72	-1.9
2,616,743	-		GFF2599	0.73	+0.7
2,616,751	+		GFF2599	0.74	-1.9
2,616,751	+		GFF2599	0.74	-2.8
2,616,751	+		GFF2599	0.74	-0.8
2,616,757	+		GFF2599	0.74	-0.2
2,616,760	-		GFF2599	0.74	+1.1
2,616,760	-		GFF2599	0.74	-2.7
2,616,769	+		GFF2599	0.75	-1.0
2,616,770	-		GFF2599	0.75	-2.3
2,616,770	-		GFF2599	0.75	-0.8
2,616,777	-		GFF2599	0.75	-1.1
2,616,789	-		GFF2599	0.76	-1.2
2,616,852	-		GFF2599	0.79	-0.3
2,616,870	+		GFF2599	0.80	-1.2
2,616,870	+		GFF2599	0.80	-0.3
2,616,880	+		GFF2599	0.81	+0.1
2,616,888	-		GFF2599	0.81	-1.3
2,616,888	-		GFF2599	0.81	-1.6
2,616,898	+		GFF2599	0.82	-0.2
2,616,898	+		GFF2599	0.82	-0.6
2,616,906	-		GFF2599	0.82	-0.7
2,616,926	+		GFF2599	0.84	-0.1
2,616,933	-		GFF2599	0.84	-1.3
2,616,934	-		GFF2599	0.84	-1.5
2,616,934	-		GFF2599	0.84	-0.5
2,616,971	+		GFF2599	0.86	-0.6
2,616,971	+		GFF2599	0.86	-0.1
2,616,971	+		GFF2599	0.86	+0.2
2,616,976	+		GFF2599	0.87	-1.0
2,616,976	+		GFF2599	0.87	-1.2
2,616,976	+		GFF2599	0.87	-1.9
2,616,979	-		GFF2599	0.87	-0.9
2,616,996	-		GFF2599	0.88	-2.0
2,616,998	+		GFF2599	0.88	-2.4
2,616,998	+		GFF2599	0.88	-0.3
2,617,021	-		GFF2599	0.89	-2.5
2,617,027	-		GFF2599	0.89	-0.7
2,617,040	-				-0.7
2,617,043	-				+0.3
2,617,084	+				+1.6
2,617,089	+				-1.2
2,617,097	-				+0.2
2,617,097	-				+1.1
2,617,097	-				+0.4
2,617,121	+				-1.5
2,617,141	-				-0.5
2,617,142	+				-3.1
2,617,142	+				-0.9
2,617,149	-				-0.6
2,617,150	-				-1.1
2,617,150	-				+1.0
2,617,168	+				-0.7
2,617,171	-				-1.1
2,617,174	+				+0.1
2,617,202	+				-1.6
2,617,203	+				-1.7
2,617,208	+				-1.8
2,617,208	+				-0.1
2,617,208	+				-1.2
2,617,211	-				-1.0
2,617,211	-				-1.0
2,617,211	-				-0.5
2,617,213	+				+0.1
2,617,216	-				+0.9
2,617,221	-				-2.0
2,617,236	+				+0.4
2,617,236	+				-2.9
2,617,244	-				-2.4
2,617,246	+				-0.3
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