Strain Fitness in Sphingobium sp. HT1-2 around GFF2404

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,422,345	+				-0.2
2,422,345	+				+1.3
2,422,385	-				-1.4
2,422,396	-				-1.2
2,422,405	+		GFF2402	0.12	+1.8
2,422,416	+		GFF2402	0.15	+0.3
2,422,438	+		GFF2402	0.20	+0.3
2,422,438	-		GFF2402	0.20	-0.3
2,422,545	-		GFF2402	0.48	+1.0
2,422,547	-		GFF2402	0.49	-0.2
2,422,548	-		GFF2402	0.49	-0.2
2,422,551	+		GFF2402	0.50	+0.5
2,422,559	-		GFF2402	0.52	+0.8
2,422,561	+		GFF2402	0.52	-1.1
2,422,571	-		GFF2402	0.55	-0.7
2,422,619	+		GFF2402	0.67	+0.6
2,422,623	+		GFF2402	0.68	-1.8
2,422,623	+		GFF2402	0.68	-2.3
2,422,637	+		GFF2402	0.72	+0.9
2,422,642	+		GFF2402	0.73	+0.5
2,422,647	+		GFF2402	0.75	+1.3
2,422,647	+		GFF2402	0.75	+0.0
2,422,655	-		GFF2402	0.77	-0.1
2,422,674	+		GFF2402	0.82	-0.3
2,422,674	+		GFF2402	0.82	+1.3
2,422,682	-		GFF2402	0.84	-1.2
2,422,682	-		GFF2402	0.84	+1.3
2,422,700	+		GFF2402	0.89	-0.7
2,422,708	-				+1.6
2,422,723	+				+0.3
2,422,728	+				+1.5
2,422,731	-				+0.3
2,422,736	-				+0.7
2,422,736	-				-1.9
2,422,736	-				-0.8
2,422,745	-				-0.3
2,422,745	-				-0.1
2,422,813	+				+1.3
2,422,859	+				+0.3
2,422,873	+				-0.6
2,422,879	+				+0.3
2,422,912	-				-0.6
2,422,927	-				+0.3
2,422,952	+				+1.0
2,422,960	-		GFF2403	0.11	-0.2
2,422,960	-		GFF2403	0.11	+0.0
2,422,977	-		GFF2403	0.16	+1.5
2,423,026	-		GFF2403	0.31	+0.5
2,423,048	-		GFF2403	0.38	-1.0
2,423,058	+		GFF2403	0.40	-0.5
2,423,084	+		GFF2403	0.48	-0.3
2,423,092	-		GFF2403	0.51	+1.0
2,423,147	+		GFF2403	0.67	-0.2
2,423,152	-		GFF2403	0.68	-0.4
2,423,155	-		GFF2403	0.69	-0.3
2,423,155	-		GFF2403	0.69	+0.7
2,423,155	-		GFF2403	0.69	-0.5
2,423,155	-		GFF2403	0.69	+1.1
2,423,155	-		GFF2403	0.69	-0.3
2,423,162	+		GFF2403	0.71	+1.0
2,423,185	-		GFF2403	0.78	-0.9
2,423,291	+				-0.6
2,423,352	+				-1.7
2,423,352	+				-2.1
2,423,352	+				-0.8
2,423,352	+				-1.5
2,423,364	+				+1.7
2,423,408	-				-2.4
2,423,480	+				+0.5
2,423,546	-				-1.6
2,423,621	+		GFF2404	0.13	-1.6
2,423,651	-		GFF2404	0.14	-2.9
2,423,653	-		GFF2404	0.15	+0.1
2,423,696	-		GFF2404	0.16	-3.1
2,423,720	+		GFF2404	0.18	+0.3
2,423,730	-		GFF2404	0.18	-1.9
2,423,753	+		GFF2404	0.19	-1.9
2,423,758	+		GFF2404	0.19	-1.3
2,423,771	+		GFF2404	0.20	-1.9
2,423,771	+		GFF2404	0.20	-1.5
2,423,771	+		GFF2404	0.20	+0.6
2,423,774	-		GFF2404	0.20	-1.8
2,423,787	-		GFF2404	0.21	-1.5
2,423,866	+		GFF2404	0.24	-1.0
2,423,871	+		GFF2404	0.25	-2.1
2,423,889	+		GFF2404	0.25	-1.7
2,423,963	-		GFF2404	0.29	-2.1
2,424,051	+		GFF2404	0.33	-2.5
2,424,057	-		GFF2404	0.33	-2.3
2,424,064	-		GFF2404	0.33	-0.1
2,424,110	-		GFF2404	0.35	-2.7
2,424,206	+		GFF2404	0.40	-1.5
2,424,206	+		GFF2404	0.40	-0.9
2,424,206	+		GFF2404	0.40	-1.8
2,424,206	+		GFF2404	0.40	-1.6
2,424,206	-		GFF2404	0.40	-0.8
2,424,206	-		GFF2404	0.40	-2.1
2,424,214	-		GFF2404	0.40	-1.2
2,424,214	-		GFF2404	0.40	-1.1
2,424,250	+		GFF2404	0.42	+0.3
2,424,250	+		GFF2404	0.42	-0.9
2,424,274	-		GFF2404	0.43	+0.9
2,424,282	-		GFF2404	0.43	-1.5
2,424,294	-		GFF2404	0.44	-1.2
2,424,296	+		GFF2404	0.44	-1.3
2,424,296	+		GFF2404	0.44	-1.3
2,424,296	+		GFF2404	0.44	-2.3
2,424,302	-		GFF2404	0.44	-1.6
2,424,304	-		GFF2404	0.44	-1.6
2,424,304	-		GFF2404	0.44	-2.4
2,424,304	-		GFF2404	0.44	+0.9
2,424,304	-		GFF2404	0.44	-2.0
2,424,304	-		GFF2404	0.44	-0.8
2,424,304	-		GFF2404	0.44	-2.3
2,424,304	-		GFF2404	0.44	-2.3
2,424,304	-		GFF2404	0.44	-0.1
2,424,401	+		GFF2404	0.49	-1.4
2,424,407	+		GFF2404	0.49	-1.7
2,424,407	+		GFF2404	0.49	-2.1
2,424,407	+		GFF2404	0.49	-1.2
2,424,461	-		GFF2404	0.52	-2.2
2,424,467	-		GFF2404	0.52	-0.9
2,424,467	-		GFF2404	0.52	-0.3
2,424,467	-		GFF2404	0.52	-0.1
2,424,469	-		GFF2404	0.52	-0.3
2,424,555	+		GFF2404	0.56	-1.9
2,424,557	+		GFF2404	0.56	-1.4
2,424,637	+		GFF2404	0.60	-0.3
2,424,642	+		GFF2404	0.60	-2.6
2,424,642	+		GFF2404	0.60	+0.7
2,424,642	+		GFF2404	0.60	-2.5
2,424,642	+		GFF2404	0.60	-1.3
2,424,642	+		GFF2404	0.60	-1.0
2,424,642	+		GFF2404	0.60	-1.0
2,424,642	+		GFF2404	0.60	-1.1
2,424,642	+		GFF2404	0.60	-3.3
2,424,674	-		GFF2404	0.61	-2.4
2,424,704	+		GFF2404	0.63	+0.5
2,424,717	-		GFF2404	0.63	+0.5
2,424,720	+		GFF2404	0.63	-0.1
2,424,754	-		GFF2404	0.65	-1.0
2,424,802	+		GFF2404	0.67	-0.7
2,424,802	+		GFF2404	0.67	-0.9
2,424,815	+		GFF2404	0.68	-2.4
2,424,827	-		GFF2404	0.68	-1.2
2,424,860	+		GFF2404	0.70	+0.3
2,424,860	+		GFF2404	0.70	-2.1
2,424,862	-		GFF2404	0.70	-0.2
2,424,873	-		GFF2404	0.71	-1.8
2,424,883	+		GFF2404	0.71	-3.5
2,424,891	-		GFF2404	0.71	-1.9
2,425,104	+		GFF2404	0.81	-1.2
2,425,104	+		GFF2404	0.81	-3.1
2,425,104	+		GFF2404	0.81	-3.2
2,425,104	+		GFF2404	0.81	-2.5
2,425,104	+		GFF2404	0.81	-1.3
2,425,112	-		GFF2404	0.81	-2.6
2,425,112	-		GFF2404	0.81	-1.3
2,425,127	-		GFF2404	0.82	-1.2
2,425,142	-		GFF2404	0.83	-0.5
2,425,173	-		GFF2404	0.84	-3.1
2,425,173	-		GFF2404	0.84	+0.4
2,425,193	+		GFF2404	0.85	-1.5
2,425,229	+		GFF2404	0.87	-1.4
2,425,229	+		GFF2404	0.87	-1.5
2,425,229	+		GFF2404	0.87	+0.1
2,425,229	+		GFF2404	0.87	-0.4
2,425,229	+		GFF2404	0.87	-1.2
2,425,311	+				+0.1
2,425,311	+				-0.9
2,425,356	-				-0.9
2,425,361	-				-2.6
2,425,361	-				-0.2
2,425,361	-				-2.1
2,425,361	-				+0.8
2,425,415	-				-2.8
2,425,487	-				-0.1
2,425,502	-				+0.6
2,425,528	+				-0.0
2,425,533	+				-0.6
2,425,578	-				-1.4
2,425,608	+				-2.7
2,425,637	-				+1.1
2,425,800	+		GFF2405	0.42	+1.2
2,425,808	-		GFF2405	0.43	-0.3
2,425,822	+		GFF2405	0.46	+0.2
2,425,830	-		GFF2405	0.48	+0.9
2,425,830	-		GFF2405	0.48	-0.4
2,425,830	-		GFF2405	0.48	+0.5
2,425,830	-		GFF2405	0.48	-0.1
2,425,841	+		GFF2405	0.50	+0.3
2,425,846	+		GFF2405	0.51	+0.6
2,425,846	+		GFF2405	0.51	-1.1
2,425,846	+		GFF2405	0.51	+0.7
2,425,846	+		GFF2405	0.51	+1.0
2,425,846	+		GFF2405	0.51	+0.1
2,425,851	+		GFF2405	0.53	+0.1
2,425,851	+		GFF2405	0.53	-0.1
2,425,854	-		GFF2405	0.53	+0.4
2,425,854	-		GFF2405	0.53	+0.1
2,425,854	-		GFF2405	0.53	+0.1
2,425,854	-		GFF2405	0.53	-0.8
2,425,854	-		GFF2405	0.53	-0.3
2,425,854	-		GFF2405	0.53	-0.8
2,425,854	-		GFF2405	0.53	+0.1
2,425,854	-		GFF2405	0.53	+2.5
2,425,854	-		GFF2405	0.53	-0.7
2,425,859	-		GFF2405	0.54	-2.5
2,425,873	+		GFF2405	0.57	+0.2
2,425,878	+		GFF2405	0.58	-0.3
2,425,883	+		GFF2405	0.59	+1.6
2,425,883	+		GFF2405	0.59	-0.3
2,425,883	+		GFF2405	0.59	+0.7
2,425,883	+		GFF2405	0.59	+0.7
2,425,883	+		GFF2405	0.59	-0.7
2,425,883	+		GFF2405	0.59	+0.3
2,425,883	+		GFF2405	0.59	-1.2
2,425,891	-		GFF2405	0.61	-1.7
2,425,891	-		GFF2405	0.61	+0.1
2,425,891	-		GFF2405	0.61	+0.8
2,425,892	-		GFF2405	0.61	+0.8
2,425,893	+		GFF2405	0.62	-1.4
2,425,903	+		GFF2405	0.64	-0.8
2,425,913	+		GFF2405	0.66	-0.7
2,425,939	+		GFF2405	0.71	-0.8
2,425,945	+		GFF2405	0.73	+1.5
2,425,949	+		GFF2405	0.74	-2.9
2,425,961	+		GFF2405	0.76	+0.9
2,426,020	-		GFF2405	0.89	-0.3
2,426,054	+				-0.3
2,426,062	-				-0.9
2,426,062	-				-0.7
2,426,062	-				+0.1
2,426,062	-				+1.0
2,426,081	-				+0.1
2,426,096	+				-1.1
2,426,101	+				+1.0
2,426,109	-				-1.0
2,426,158	+				+0.8
2,426,158	+				-1.0
2,426,158	+				-0.9
2,426,158	+				-1.6
2,426,158	+				+0.1
2,426,158	+				+2.2
2,426,158	+				-1.0
2,426,158	+				-1.3
2,426,158	+				-1.8
2,426,158	+				-0.0
2,426,158	+				+0.8
2,426,166	-				-1.3
2,426,166	-				+1.1
2,426,166	-				-0.1
2,426,166	-				-0.3
2,426,166	-				-0.9
2,426,166	-				-1.7
2,426,166	-				+0.6
2,426,166	-				-0.8
2,426,193	+				-0.8
2,426,212	+				-0.6
2,426,220	-				+0.2
2,426,258	-				-1.5
2,426,262	-				+0.0
2,426,262	-				+0.3
2,426,298	+				+1.0
2,426,312	-				-1.8
2,426,312	-				-0.2
2,426,376	+		GFF2406	0.11	+1.0
2,426,376	+		GFF2406	0.11	+1.8
2,426,384	-		GFF2406	0.12	+0.2
2,426,384	-		GFF2406	0.12	-1.0
2,426,428	-		GFF2406	0.14	-0.8
2,426,443	-		GFF2406	0.15	+0.2
2,426,454	+		GFF2406	0.16	-0.8
2,426,462	-		GFF2406	0.16	+0.7
2,426,492	-		GFF2406	0.18	+0.5
2,426,497	-		GFF2406	0.18	-0.2
2,426,497	-		GFF2406	0.18	+0.7
2,426,497	-		GFF2406	0.18	-2.2