Strain Fitness in Sphingobium sp. HT1-2 around GFF2397

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,417,531	-		GFF2396	0.34	+0.9
2,417,531	-		GFF2396	0.34	-0.2
2,417,535	+		GFF2396	0.34	-0.9
2,417,538	-		GFF2396	0.35	-2.3
2,417,538	-		GFF2396	0.35	+1.3
2,417,597	-		GFF2396	0.39	-0.9
2,417,611	+		GFF2396	0.40	-0.9
2,417,614	-		GFF2396	0.40	+2.2
2,417,619	-		GFF2396	0.40	-0.1
2,417,625	+		GFF2396	0.40	+1.2
2,417,632	-		GFF2396	0.41	+1.2
2,417,634	-		GFF2396	0.41	-0.9
2,417,636	+		GFF2396	0.41	-1.7
2,417,641	+		GFF2396	0.42	+0.1
2,417,641	+		GFF2396	0.42	+0.5
2,417,646	+		GFF2396	0.42	+0.3
2,417,649	-		GFF2396	0.42	+0.3
2,417,688	+		GFF2396	0.45	+0.1
2,417,736	+		GFF2396	0.48	-1.0
2,417,736	+		GFF2396	0.48	+0.4
2,417,744	-		GFF2396	0.48	-0.8
2,417,744	-		GFF2396	0.48	+0.3
2,417,744	-		GFF2396	0.48	+0.5
2,417,744	-		GFF2396	0.48	+0.6
2,417,749	-		GFF2396	0.49	+1.0
2,417,749	-		GFF2396	0.49	+1.4
2,417,750	+		GFF2396	0.49	+0.9
2,417,750	+		GFF2396	0.49	-0.6
2,417,755	+		GFF2396	0.49	+0.8
2,417,755	+		GFF2396	0.49	+0.4
2,417,758	-		GFF2396	0.49	+0.2
2,417,758	-		GFF2396	0.49	+0.3
2,417,758	-		GFF2396	0.49	+0.5
2,417,763	-		GFF2396	0.50	+1.9
2,417,763	-		GFF2396	0.50	-1.2
2,417,763	-		GFF2396	0.50	+0.9
2,417,763	-		GFF2396	0.50	+1.1
2,417,773	-		GFF2396	0.50	+0.0
2,417,797	+		GFF2396	0.52	-1.4
2,417,797	+		GFF2396	0.52	+0.4
2,417,805	-		GFF2396	0.52	-0.9
2,417,825	-		GFF2396	0.54	+0.2
2,417,947	+		GFF2396	0.62	+0.7
2,417,974	-		GFF2396	0.64	-0.3
2,417,976	+		GFF2396	0.64	+0.8
2,417,976	+		GFF2396	0.64	+1.4
2,417,976	+		GFF2396	0.64	-0.9
2,417,977	+		GFF2396	0.64	-2.8
2,418,003	+		GFF2396	0.66	+0.4
2,418,010	-		GFF2396	0.66	+0.4
2,418,014	+		GFF2396	0.66	-0.2
2,418,014	+		GFF2396	0.66	-0.7
2,418,015	+		GFF2396	0.66	+0.0
2,418,015	+		GFF2396	0.66	-1.3
2,418,021	-		GFF2396	0.67	-1.2
2,418,022	-		GFF2396	0.67	-2.1
2,418,023	-		GFF2396	0.67	+0.9
2,418,023	-		GFF2396	0.67	-2.4
2,418,023	-		GFF2396	0.67	+1.7
2,418,024	+		GFF2396	0.67	+0.0
2,418,024	+		GFF2396	0.67	+0.2
2,418,031	-		GFF2396	0.68	+0.2
2,418,032	-		GFF2396	0.68	-0.8
2,418,032	-		GFF2396	0.68	+0.3
2,418,054	+		GFF2396	0.69	-0.8
2,418,064	+		GFF2396	0.70	-2.0
2,418,067	-		GFF2396	0.70	+0.7
2,418,067	-		GFF2396	0.70	+0.7
2,418,071	+		GFF2396	0.70	+0.7
2,418,072	-		GFF2396	0.70	+0.2
2,418,072	-		GFF2396	0.70	-0.4
2,418,072	-		GFF2396	0.70	+0.1
2,418,072	-		GFF2396	0.70	+1.7
2,418,079	-		GFF2396	0.71	+0.6
2,418,079	-		GFF2396	0.71	+1.2
2,418,082	+		GFF2396	0.71	+0.3
2,418,094	+		GFF2396	0.72	+0.9
2,418,094	+		GFF2396	0.72	-0.0
2,418,099	+		GFF2396	0.72	-0.3
2,418,099	+		GFF2396	0.72	+0.9
2,418,099	+		GFF2396	0.72	-2.3
2,418,099	+		GFF2396	0.72	+0.4
2,418,101	-		GFF2396	0.72	-0.3
2,418,112	-		GFF2396	0.73	-0.0
2,418,114	+		GFF2396	0.73	-0.1
2,418,117	-		GFF2396	0.73	+1.2
2,418,119	+		GFF2396	0.73	+0.1
2,418,122	-		GFF2396	0.74	-1.7
2,418,124	+		GFF2396	0.74	-1.0
2,418,137	+		GFF2396	0.75	-0.2
2,418,137	+		GFF2396	0.75	+0.5
2,418,144	+		GFF2396	0.75	-1.7
2,418,144	+		GFF2396	0.75	+1.2
2,418,144	+		GFF2396	0.75	+1.2
2,418,144	+		GFF2396	0.75	-1.6
2,418,144	+		GFF2396	0.75	-0.2
2,418,145	-		GFF2396	0.75	-3.1
2,418,145	-		GFF2396	0.75	-1.2
2,418,145	-		GFF2396	0.75	-0.9
2,418,149	+		GFF2396	0.75	+0.8
2,418,149	+		GFF2396	0.75	+1.6
2,418,149	+		GFF2396	0.75	-1.4
2,418,149	+		GFF2396	0.75	-0.6
2,418,149	+		GFF2396	0.75	+0.6
2,418,149	+		GFF2396	0.75	-0.5
2,418,149	+		GFF2396	0.75	-1.4
2,418,152	-		GFF2396	0.76	+1.3
2,418,152	-		GFF2396	0.76	-1.0
2,418,152	-		GFF2396	0.76	-1.2
2,418,152	-		GFF2396	0.76	+0.2
2,418,152	-		GFF2396	0.76	-0.1
2,418,152	-		GFF2396	0.76	+1.1
2,418,152	-		GFF2396	0.76	-0.1
2,418,155	+		GFF2396	0.76	+0.1
2,418,157	-		GFF2396	0.76	+0.9
2,418,157	-		GFF2396	0.76	-0.7
2,418,169	-		GFF2396	0.77	-0.9
2,418,169	-		GFF2396	0.77	+0.1
2,418,179	-		GFF2396	0.77	+1.0
2,418,204	-		GFF2396	0.79	-0.0
2,418,213	-		GFF2396	0.80	-0.9
2,418,213	-		GFF2396	0.80	-0.1
2,418,214	-		GFF2396	0.80	-1.4
2,418,224	+		GFF2396	0.80	-0.7
2,418,232	-		GFF2396	0.81	+0.5
2,418,274	+		GFF2396	0.84	-0.9
2,418,279	+		GFF2396	0.84	-1.5
2,418,287	-		GFF2396	0.85	-1.3
2,418,287	-		GFF2396	0.85	+0.9
2,418,287	-		GFF2396	0.85	+0.6
2,418,291	-		GFF2396	0.85	+0.5
2,418,313	+		GFF2396	0.86	-0.5
2,418,313	+		GFF2396	0.86	+0.5
2,418,313	+		GFF2396	0.86	-0.2
2,418,313	+		GFF2396	0.86	+2.0
2,418,313	+		GFF2396	0.86	+0.9
2,418,321	-		GFF2396	0.87	+1.3
2,418,321	-		GFF2396	0.87	+0.7
2,418,347	+		GFF2396	0.89	-1.3
2,418,349	+		GFF2396	0.89	-0.8
2,418,368	+				-0.2
2,418,368	+				+0.1
2,418,376	-				-0.7
2,418,381	-				+0.5
2,418,381	-				+0.4
2,418,390	-				-2.0
2,418,407	+				-1.0
2,418,407	+				-2.0
2,418,433	+				+0.4
2,418,436	-				-1.2
2,418,437	+				+0.0
2,418,443	+				+0.8
2,418,534	+				-2.2
2,418,547	-				-2.7
2,418,592	+				-0.5
2,418,592	+				+0.1
2,418,592	+				-0.7
2,418,592	+				-0.5
2,418,592	+				+0.7
2,418,592	+				-0.5
2,418,599	-				+0.3
2,418,599	-				-0.0
2,418,599	-				+0.7
2,418,600	-				+2.8
2,418,600	-				-1.8
2,418,600	-				+0.9
2,418,600	-				-0.3
2,418,605	-				-0.4
2,418,636	-		GFF2397	0.10	-0.3
2,418,636	-		GFF2397	0.10	+0.9
2,418,637	+		GFF2397	0.11	-0.3
2,418,645	-		GFF2397	0.11	-1.0
2,418,655	-		GFF2397	0.12	+0.1
2,418,764	-		GFF2397	0.23	+0.4
2,418,764	-		GFF2397	0.23	-0.3
2,418,801	-		GFF2397	0.27	-0.1
2,418,835	+		GFF2397	0.30	+1.5
2,418,837	+		GFF2397	0.30	+0.6
2,418,850	+		GFF2397	0.31	-0.6
2,418,850	+		GFF2397	0.31	-0.7
2,418,850	+		GFF2397	0.31	-0.7
2,418,850	+		GFF2397	0.31	+0.2
2,418,855	+		GFF2397	0.32	+0.1
2,418,855	+		GFF2397	0.32	-0.5
2,418,858	-		GFF2397	0.32	+0.3
2,418,858	-		GFF2397	0.32	-0.5
2,418,858	-		GFF2397	0.32	-0.6
2,418,858	-		GFF2397	0.32	+0.1
2,418,858	-		GFF2397	0.32	+0.2
2,418,860	+		GFF2397	0.32	-0.1
2,418,865	+		GFF2397	0.33	-1.1
2,418,918	-		GFF2397	0.38	+0.7
2,418,920	+		GFF2397	0.38	+2.0
2,418,920	+		GFF2397	0.38	-0.9
2,418,920	+		GFF2397	0.38	-0.0
2,418,941	+		GFF2397	0.40	-1.0
2,418,941	+		GFF2397	0.40	-0.4
2,418,947	+		GFF2397	0.41	-0.0
2,418,963	-		GFF2397	0.42	-0.4
2,418,975	-		GFF2397	0.43	+0.0
2,418,981	-		GFF2397	0.44	+0.3
2,418,981	-		GFF2397	0.44	-1.0
2,418,991	-		GFF2397	0.45	-0.2
2,419,003	-		GFF2397	0.46	+0.1
2,419,011	-		GFF2397	0.47	+2.6
2,419,021	-		GFF2397	0.48	-0.3
2,419,054	+		GFF2397	0.51	-1.0
2,419,085	+		GFF2397	0.54	-1.1
2,419,093	-		GFF2397	0.55	+1.7
2,419,093	-		GFF2397	0.55	+0.6
2,419,158	-		GFF2397	0.61	+0.5
2,419,275	+		GFF2397	0.73	+2.0
2,419,309	+		GFF2397	0.76	-2.5
2,419,314	+		GFF2397	0.76	-1.9
2,419,314	+		GFF2397	0.76	-0.5
2,419,319	+		GFF2397	0.77	+0.7
2,419,322	-		GFF2397	0.77	-1.2
2,419,322	-		GFF2397	0.77	+0.5
2,419,327	-		GFF2397	0.78	+2.0
2,419,351	+		GFF2397	0.80	-1.1
2,419,351	+		GFF2397	0.80	-1.6
2,419,351	+		GFF2397	0.80	-2.7
2,419,351	+		GFF2397	0.80	+0.1
2,419,359	-		GFF2397	0.81	-0.4
2,419,359	-		GFF2397	0.81	+0.1
2,419,359	-		GFF2397	0.81	-0.6
2,419,359	-		GFF2397	0.81	+0.3
2,419,359	-		GFF2397	0.81	-0.7
2,419,389	+		GFF2397	0.84	+1.0
2,419,397	-		GFF2397	0.84	+0.7
2,419,397	-		GFF2397	0.84	-1.5
2,419,397	-		GFF2397	0.84	-0.9
2,419,425	+		GFF2397	0.87	+0.1
2,419,440	+		GFF2397	0.89	-0.5
2,419,476	-				+1.5
2,419,510	+				+0.1
2,419,514	-				-2.1
2,419,544	+				+0.3
2,419,552	-				+0.2
2,419,552	-				-0.1
2,419,552	-				+0.2
2,419,552	-				-0.3
2,419,552	-				-0.2
2,419,552	-				+2.0
2,419,562	-				-0.5
2,419,628	+				+1.1
2,419,720	-		GFF2398	0.18	+0.2
2,419,764	-		GFF2398	0.23	-1.3
2,419,806	-		GFF2398	0.29	+0.6
2,419,808	+		GFF2398	0.29	+0.2
2,419,847	+		GFF2398	0.34	+0.3
2,419,855	-		GFF2398	0.35	+0.0
2,419,855	-		GFF2398	0.35	+0.3
2,419,873	-		GFF2398	0.37	+0.7
2,419,878	-		GFF2398	0.38	-0.6
2,419,934	+		GFF2398	0.45	-0.7
2,419,934	+		GFF2398	0.45	-1.2
2,419,934	+		GFF2398	0.45	-0.5
2,419,949	-		GFF2398	0.47	-1.4
2,419,950	+		GFF2398	0.47	+0.2
2,419,995	-		GFF2398	0.53	+0.7
2,420,028	+		GFF2398	0.57	-0.7
2,420,031	-		GFF2398	0.58	-0.5
2,420,041	+		GFF2398	0.59	-0.3
2,420,065	-		GFF2398	0.62	+0.3
2,420,072	+		GFF2398	0.63	-1.9
2,420,128	-		GFF2398	0.70	+0.5
2,420,229	+		GFF2398	0.83	-0.0
2,420,300	+				+1.2
2,420,324	-				+0.2
2,420,324	-				+0.9
2,420,339	-				+0.1
2,420,344	-				-0.9
2,420,357	+				+1.2
2,420,359	+				-0.6
2,420,394	+				+1.1
2,420,395	+				-2.1
2,420,395	+				+0.1
2,420,395	+				-0.6
2,420,395	+				+0.7
2,420,403	-				+0.7
2,420,403	-				-0.6
2,420,403	-				+0.6
2,420,456	-				+0.2
2,420,493	+				-1.6
2,420,493	+				-0.5
2,420,522	-				-0.1