Strain Fitness in Sphingobium sp. HT1-2 around GFF2284

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,309,805	-		GFF2283	0.11	-1.2
2,309,805	-		GFF2283	0.11	-0.3
2,309,805	-		GFF2283	0.11	+0.2
2,309,805	-		GFF2283	0.11	-0.5
2,309,805	-		GFF2283	0.11	-1.5
2,309,805	-		GFF2283	0.11	-0.9
2,309,805	-		GFF2283	0.11	-1.3
2,309,805	-		GFF2283	0.11	+0.4
2,309,807	+		GFF2283	0.11	-0.1
2,309,807	+		GFF2283	0.11	+2.2
2,309,810	-		GFF2283	0.12	-1.8
2,309,810	-		GFF2283	0.12	-0.3
2,309,815	-		GFF2283	0.12	+1.0
2,309,815	-		GFF2283	0.12	-1.0
2,309,817	+		GFF2283	0.12	+0.5
2,309,817	+		GFF2283	0.12	-2.3
2,309,817	+		GFF2283	0.12	-0.6
2,309,817	+		GFF2283	0.12	-2.0
2,309,817	+		GFF2283	0.12	-0.8
2,309,817	+		GFF2283	0.12	-0.2
2,309,819	+		GFF2283	0.12	+1.2
2,309,825	-		GFF2283	0.13	-1.3
2,309,825	-		GFF2283	0.13	-0.8
2,309,856	+		GFF2283	0.16	-1.3
2,309,856	+		GFF2283	0.16	-0.6
2,309,860	-		GFF2283	0.16	+0.2
2,309,864	-		GFF2283	0.17	+1.3
2,309,869	-		GFF2283	0.17	+0.3
2,309,869	-		GFF2283	0.17	+0.2
2,309,869	-		GFF2283	0.17	+0.4
2,309,882	+		GFF2283	0.19	-0.3
2,309,882	+		GFF2283	0.19	+0.3
2,309,890	-		GFF2283	0.19	-0.7
2,309,895	-		GFF2283	0.20	-0.6
2,309,898	+		GFF2283	0.20	-0.2
2,309,905	+		GFF2283	0.21	-1.4
2,309,905	-		GFF2283	0.21	-0.2
2,309,918	-		GFF2283	0.22	+0.9
2,309,918	-		GFF2283	0.22	+0.1
2,309,935	-		GFF2283	0.24	+0.4
2,309,935	-		GFF2283	0.24	-0.8
2,309,937	+		GFF2283	0.24	+0.8
2,309,937	+		GFF2283	0.24	+0.6
2,309,944	+		GFF2283	0.25	-1.3
2,309,944	+		GFF2283	0.25	-0.4
2,309,944	+		GFF2283	0.25	-1.1
2,309,944	+		GFF2283	0.25	-0.1
2,309,949	+		GFF2283	0.25	-1.2
2,309,952	-		GFF2283	0.26	+0.6
2,309,952	-		GFF2283	0.26	-2.3
2,309,952	-		GFF2283	0.26	+1.2
2,309,952	-		GFF2283	0.26	+1.0
2,309,952	-		GFF2283	0.26	+0.9
2,309,952	-		GFF2283	0.26	+0.2
2,309,957	-		GFF2283	0.26	+1.0
2,309,957	-		GFF2283	0.26	-2.6
2,309,957	-		GFF2283	0.26	+0.2
2,309,957	-		GFF2283	0.26	+0.3
2,309,969	+		GFF2283	0.27	-1.8
2,309,977	-		GFF2283	0.28	-1.6
2,309,989	-		GFF2283	0.29	+0.4
2,309,992	+		GFF2283	0.30	+0.0
2,310,008	+		GFF2283	0.31	-1.7
2,310,008	+		GFF2283	0.31	-0.6
2,310,030	+		GFF2283	0.33	-1.5
2,310,036	-		GFF2283	0.34	+0.8
2,310,038	-		GFF2283	0.34	-0.7
2,310,038	-		GFF2283	0.34	-0.6
2,310,047	-		GFF2283	0.35	+0.4
2,310,055	-		GFF2283	0.36	-1.2
2,310,066	-		GFF2283	0.37	+0.6
2,310,082	+		GFF2283	0.38	-0.1
2,310,082	+		GFF2283	0.38	-1.4
2,310,085	-		GFF2283	0.39	+1.2
2,310,087	+		GFF2283	0.39	-0.3
2,310,090	-		GFF2283	0.39	-1.4
2,310,090	-		GFF2283	0.39	+0.0
2,310,090	-		GFF2283	0.39	+0.6
2,310,090	-		GFF2283	0.39	+0.3
2,310,095	-		GFF2283	0.40	+0.7
2,310,095	-		GFF2283	0.40	-2.1
2,310,118	-		GFF2283	0.42	+0.3
2,310,121	+		GFF2283	0.42	+0.5
2,310,142	+		GFF2283	0.44	-0.4
2,310,142	-		GFF2283	0.44	-0.5
2,310,173	+		GFF2283	0.48	+0.7
2,310,178	+		GFF2283	0.48	-0.3
2,310,178	+		GFF2283	0.48	+0.7
2,310,218	-		GFF2283	0.52	+0.3
2,310,237	+		GFF2283	0.54	-1.3
2,310,245	-		GFF2283	0.55	-0.1
2,310,268	-		GFF2283	0.57	-1.7
2,310,270	-		GFF2283	0.57	-0.4
2,310,289	-		GFF2283	0.59	+0.2
2,310,289	-		GFF2283	0.59	-1.5
2,310,304	+		GFF2283	0.61	-1.8
2,310,304	+		GFF2283	0.61	+0.3
2,310,304	+		GFF2283	0.61	+0.2
2,310,304	+		GFF2283	0.61	-1.1
2,310,304	+		GFF2283	0.61	+0.5
2,310,310	-		GFF2283	0.61	-1.3
2,310,312	-		GFF2283	0.61	+1.0
2,310,312	-		GFF2283	0.61	+0.0
2,310,312	-		GFF2283	0.61	+0.1
2,310,312	-		GFF2283	0.61	+0.1
2,310,312	-		GFF2283	0.61	+0.5
2,310,317	-		GFF2283	0.62	-0.2
2,310,332	+		GFF2283	0.63	-1.3
2,310,332	+		GFF2283	0.63	+0.2
2,310,333	+		GFF2283	0.63	+0.2
2,310,340	-		GFF2283	0.64	+0.7
2,310,352	+		GFF2283	0.65	+0.1
2,310,360	-		GFF2283	0.66	+0.3
2,310,360	-		GFF2283	0.66	-0.7
2,310,365	-		GFF2283	0.67	-1.0
2,310,388	+		GFF2283	0.69	+0.5
2,310,388	+		GFF2283	0.69	+0.8
2,310,393	+		GFF2283	0.69	+1.6
2,310,393	+		GFF2283	0.69	+0.7
2,310,396	-		GFF2283	0.70	-1.5
2,310,400	+		GFF2283	0.70	-2.3
2,310,401	-		GFF2283	0.70	-1.8
2,310,401	-		GFF2283	0.70	-0.7
2,310,401	-		GFF2283	0.70	-1.9
2,310,408	-		GFF2283	0.71	+0.3
2,310,408	-		GFF2283	0.71	-0.8
2,310,415	+		GFF2283	0.72	-0.3
2,310,420	-		GFF2283	0.72	-1.1
2,310,423	-		GFF2283	0.72	-1.3
2,310,425	+		GFF2283	0.73	+0.2
2,310,431	+		GFF2283	0.73	+0.4
2,310,490	-		GFF2283	0.79	+0.8
2,310,517	+		GFF2283	0.82	-1.1
2,310,525	-		GFF2283	0.82	-0.4
2,310,539	+		GFF2283	0.84	-1.1
2,310,539	+		GFF2283	0.84	+1.2
2,310,547	-		GFF2283	0.85	-0.3
2,310,547	-		GFF2283	0.85	+0.2
2,310,547	-		GFF2283	0.85	-0.4
2,310,573	+		GFF2283	0.87	-1.8
2,310,573	+		GFF2283	0.87	-0.5
2,310,573	+		GFF2283	0.87	+0.5
2,310,573	+		GFF2283	0.87	-0.8
2,310,573	+		GFF2283	0.87	+1.2
2,310,573	+		GFF2283	0.87	-0.1
2,310,573	+		GFF2283	0.87	+1.0
2,310,579	+		GFF2283	0.88	-1.8
2,310,581	-		GFF2283	0.88	-1.2
2,310,581	-		GFF2283	0.88	-1.6
2,310,581	-		GFF2283	0.88	-0.0
2,310,581	-		GFF2283	0.88	-1.6
2,310,581	-		GFF2283	0.88	-0.3
2,310,605	-				-0.1
2,310,639	+				-0.7
2,310,696	+				-0.1
2,310,696	+				-0.3
2,310,696	+				+0.2
2,310,696	+				+0.2
2,310,704	+				+0.3
2,310,704	-				-2.0
2,310,755	+				-0.2
2,310,761	-				-0.3
2,310,776	+				+0.5
2,310,788	-				-0.9
2,310,788	-				-0.2
2,310,792	+				-1.6
2,310,792	+				+0.1
2,310,792	+				-0.7
2,310,792	+				+0.7
2,310,792	+				+1.1
2,310,792	+				-0.3
2,310,792	+				+0.0
2,310,792	+				-0.7
2,310,792	+				-0.3
2,310,800	-				-0.7
2,310,800	-				+0.5
2,310,800	-				-0.7
2,310,800	-				-1.4
2,310,800	-				-0.0
2,310,800	-				-1.5
2,310,800	-				-1.3
2,310,800	-				+0.6
2,310,807	-				+0.5
2,310,817	-				+0.2
2,310,856	-		GFF2284	0.26	+0.9
2,310,857	+		GFF2284	0.27	-1.2
2,310,865	-		GFF2284	0.31	-2.6
2,310,876	+		GFF2284	0.36	+0.0
2,310,876	+		GFF2284	0.36	+1.1
2,310,876	-		GFF2284	0.36	+0.7
2,310,884	-		GFF2284	0.40	-1.6
2,310,905	+		GFF2284	0.51	-0.8
2,310,913	-		GFF2284	0.55	+2.0
2,310,965	+		GFF2284	0.81	-0.6
2,310,973	-		GFF2284	0.85	-0.5
2,310,973	-		GFF2284	0.85	+1.2
2,310,988	+				-1.5
2,310,996	+				-0.4
2,311,022	+		GFF2285	0.16	-1.8
2,311,022	-		GFF2285	0.16	+0.4
2,311,041	-		GFF2285	0.28	-0.6
2,311,041	-		GFF2285	0.28	+0.8
2,311,044	+		GFF2285	0.30	-0.2
2,311,044	+		GFF2285	0.30	-1.0
2,311,044	+		GFF2285	0.30	-0.3
2,311,044	+		GFF2285	0.30	-1.1
2,311,044	+		GFF2285	0.30	+0.5
2,311,046	-		GFF2285	0.31	+0.3
2,311,052	-		GFF2285	0.35	-0.2
2,311,052	-		GFF2285	0.35	+0.9
2,311,052	-		GFF2285	0.35	+0.4
2,311,052	-		GFF2285	0.35	-1.6
2,311,052	-		GFF2285	0.35	-0.3
2,311,052	-		GFF2285	0.35	-1.7
2,311,083	+		GFF2285	0.56	+0.0
2,311,083	+		GFF2285	0.56	+0.6
2,311,083	+		GFF2285	0.56	+0.9
2,311,083	+		GFF2285	0.56	-1.3
2,311,083	+		GFF2285	0.56	-2.2
2,311,083	+		GFF2285	0.56	-0.1
2,311,083	+		GFF2285	0.56	-0.9
2,311,083	+		GFF2285	0.56	+0.9
2,311,083	+		GFF2285	0.56	-1.4
2,311,083	+		GFF2285	0.56	+0.0
2,311,091	-		GFF2285	0.61	+1.1
2,311,091	-		GFF2285	0.61	-0.1
2,311,091	-		GFF2285	0.61	-0.6
2,311,091	-		GFF2285	0.61	+0.6
2,311,091	-		GFF2285	0.61	+1.2
2,311,091	-		GFF2285	0.61	-0.1
2,311,091	-		GFF2285	0.61	-1.0
2,311,091	-		GFF2285	0.61	-0.3
2,311,091	-		GFF2285	0.61	+0.4
2,311,091	-		GFF2285	0.61	+0.1
2,311,093	-		GFF2285	0.62	-0.3
2,311,117	+		GFF2285	0.78	+1.7
2,311,117	+		GFF2285	0.78	+0.1
2,311,117	+		GFF2285	0.78	+1.2
2,311,117	+		GFF2285	0.78	+0.7
2,311,122	+		GFF2285	0.81	+0.7
2,311,125	-		GFF2285	0.83	-1.8
2,311,125	-		GFF2285	0.83	-0.7
2,311,127	+		GFF2285	0.84	-0.1
2,311,139	+				-2.0
2,311,155	-				-1.3
2,311,188	+				-2.1
2,311,188	+				-0.1
2,311,188	+				-0.5
2,311,188	+				-1.9
2,311,196	-				-1.9
2,311,200	+				-2.1
2,311,200	+				-0.7
2,311,298	+				-2.5
2,311,298	+				-0.3
2,311,306	+				-0.3
2,311,306	+				-0.2
2,311,306	+				-1.5
2,311,306	+				+0.5
2,311,314	-				+0.1
2,311,314	-				-2.3
2,311,319	-				-2.0
2,311,325	+				-1.4
2,311,346	-				-1.7
2,311,364	-				-0.3
2,311,373	+				-0.1
2,311,398	-		GFF2286	0.10	-1.8
2,311,449	-		GFF2286	0.13	+0.2
2,311,506	+		GFF2286	0.15	-1.8
2,311,560	-		GFF2286	0.17	-1.1
2,311,592	+		GFF2286	0.19	-0.7
2,311,600	-		GFF2286	0.19	-1.7
2,311,600	-		GFF2286	0.19	-1.0
2,311,600	-		GFF2286	0.19	-1.5
2,311,600	-		GFF2286	0.19	+0.4
2,311,600	-		GFF2286	0.19	-1.1
2,311,600	-		GFF2286	0.19	-0.5
2,311,600	-		GFF2286	0.19	-2.1
2,311,600	-		GFF2286	0.19	+0.3
2,311,611	-		GFF2286	0.20	-0.9
2,311,664	+		GFF2286	0.22	-1.8
2,311,673	+		GFF2286	0.22	-0.8
2,311,673	+		GFF2286	0.22	-1.4
2,311,678	+		GFF2286	0.22	+0.5
2,311,680	+		GFF2286	0.22	+0.6
2,311,680	+		GFF2286	0.22	-1.7
2,311,681	+		GFF2286	0.23	-2.4
2,311,681	-		GFF2286	0.23	-1.6
2,311,688	-		GFF2286	0.23	-1.7
2,311,689	-		GFF2286	0.23	-2.0
2,311,704	-		GFF2286	0.24	-1.2
2,311,758	+		GFF2286	0.26	-0.3
2,311,773	+		GFF2286	0.26	+0.4
2,311,773	+		GFF2286	0.26	-1.8
2,311,773	+		GFF2286	0.26	-2.1
2,311,774	+		GFF2286	0.27	-1.9
2,311,782	+		GFF2286	0.27	-1.3
2,311,807	-		GFF2286	0.28	-1.4
2,311,854	+		GFF2286	0.30	-2.2
2,311,879	-		GFF2286	0.31	-1.5
2,311,895	+		GFF2286	0.32	-1.7
2,311,930	-		GFF2286	0.33	+0.0
2,311,963	+		GFF2286	0.35	-0.6
2,311,986	+		GFF2286	0.36	-2.3
2,311,998	+		GFF2286	0.36	+0.8
2,312,000	+		GFF2286	0.36	-3.0