Strain Fitness in Sphingobium sp. HT1-2 around GFF2267

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,294,925	+		GFF2265	0.24	-2.7
2,294,960	+		GFF2265	0.28	-0.2
2,294,960	+		GFF2265	0.28	-0.5
2,294,965	+		GFF2265	0.29	-1.3
2,294,973	-		GFF2265	0.30	+0.5
2,294,973	-		GFF2265	0.30	+0.9
2,294,973	-		GFF2265	0.30	+1.0
2,294,973	-		GFF2265	0.30	+0.2
2,294,973	-		GFF2265	0.30	-1.0
2,294,978	-		GFF2265	0.30	+0.2
2,294,978	-		GFF2265	0.30	-0.2
2,295,030	+		GFF2265	0.37	+0.5
2,295,030	+		GFF2265	0.37	-1.6
2,295,038	-		GFF2265	0.38	+0.1
2,295,068	-		GFF2265	0.41	+0.4
2,295,073	+		GFF2265	0.42	-0.9
2,295,081	-		GFF2265	0.43	+0.8
2,295,122	+		GFF2265	0.48	-1.1
2,295,126	-		GFF2265	0.48	+1.1
2,295,160	+		GFF2265	0.52	-1.1
2,295,185	+		GFF2265	0.55	-0.4
2,295,192	+		GFF2265	0.56	+1.0
2,295,199	-		GFF2265	0.57	+0.1
2,295,270	+		GFF2265	0.65	+0.9
2,295,270	+		GFF2265	0.65	+1.0
2,295,273	-		GFF2265	0.65	+0.9
2,295,374	+		GFF2265	0.77	-0.9
2,295,374	+		GFF2265	0.77	+0.2
2,295,391	-		GFF2265	0.79	+1.3
2,295,499	-				-0.8
2,295,507	+				-0.2
2,295,527	-				+0.9
2,295,546	+				+0.1
2,295,546	+				-1.7
2,295,546	+				+0.2
2,295,546	+				+0.8
2,295,546	+				-0.1
2,295,554	-				-0.3
2,295,554	-				+1.9
2,295,554	-				-0.6
2,295,556	+				+0.1
2,295,556	+				-0.5
2,295,556	+				+1.5
2,295,564	-				+0.3
2,295,571	+				-3.0
2,295,585	-		GFF2266	0.11	-0.5
2,295,717	-		GFF2266	0.77	+0.4
2,295,717	-		GFF2266	0.77	+0.9
2,295,717	-		GFF2266	0.77	-1.3
2,295,818	-				+1.4
2,295,818	-				+1.2
2,295,849	+				+0.6
2,295,883	+				+0.2
2,295,911	-				+0.3
2,295,919	-				+0.1
2,295,940	+				+1.4
2,295,940	+				-0.5
2,296,030	+		GFF2267	0.11	-0.7
2,296,038	-		GFF2267	0.12	+1.4
2,296,038	-		GFF2267	0.12	+2.2
2,296,038	-		GFF2267	0.12	-2.0
2,296,038	-		GFF2267	0.12	-0.3
2,296,042	+		GFF2267	0.12	+2.2
2,296,045	-		GFF2267	0.12	+0.7
2,296,045	-		GFF2267	0.12	+1.3
2,296,089	+		GFF2267	0.15	-1.1
2,296,100	+		GFF2267	0.16	-1.2
2,296,100	+		GFF2267	0.16	-0.7
2,296,103	-		GFF2267	0.16	+0.1
2,296,118	+		GFF2267	0.17	+0.9
2,296,126	-		GFF2267	0.18	+0.2
2,296,136	-		GFF2267	0.19	+0.0
2,296,140	-		GFF2267	0.19	-0.5
2,296,150	+		GFF2267	0.20	+0.8
2,296,158	-		GFF2267	0.20	-1.5
2,296,158	-		GFF2267	0.20	-1.7
2,296,158	-		GFF2267	0.20	-1.8
2,296,158	-		GFF2267	0.20	+0.9
2,296,158	-		GFF2267	0.20	-1.6
2,296,163	-		GFF2267	0.20	+0.4
2,296,182	-		GFF2267	0.22	-0.2
2,296,205	-		GFF2267	0.23	-0.6
2,296,240	-		GFF2267	0.26	-0.5
2,296,240	-		GFF2267	0.26	+0.4
2,296,245	-		GFF2267	0.26	-0.3
2,296,245	-		GFF2267	0.26	-1.3
2,296,287	-		GFF2267	0.29	+1.9
2,296,287	-		GFF2267	0.29	+0.9
2,296,287	-		GFF2267	0.29	+0.5
2,296,346	-		GFF2267	0.33	+0.4
2,296,372	-		GFF2267	0.35	-0.3
2,296,377	-		GFF2267	0.35	+0.1
2,296,381	+		GFF2267	0.35	+0.4
2,296,420	+		GFF2267	0.38	+0.2
2,296,420	+		GFF2267	0.38	-0.9
2,296,424	-		GFF2267	0.38	+0.1
2,296,450	-		GFF2267	0.40	-0.6
2,296,476	-		GFF2267	0.42	-0.1
2,296,507	+		GFF2267	0.44	-0.1
2,296,526	-		GFF2267	0.45	+0.2
2,296,547	-		GFF2267	0.47	-0.7
2,296,676	+		GFF2267	0.56	-0.6
2,296,676	+		GFF2267	0.56	-1.2
2,296,676	+		GFF2267	0.56	+0.3
2,296,683	-		GFF2267	0.56	+1.0
2,296,691	+		GFF2267	0.57	-2.1
2,296,708	+		GFF2267	0.58	+0.3
2,296,803	+		GFF2267	0.65	+0.3
2,296,834	-		GFF2267	0.67	-0.8
2,296,856	+		GFF2267	0.68	-1.4
2,296,859	+		GFF2267	0.68	-2.5
2,296,871	+		GFF2267	0.69	-0.4
2,296,871	+		GFF2267	0.69	-0.1
2,296,871	+		GFF2267	0.69	+0.3
2,296,871	+		GFF2267	0.69	+0.6
2,296,874	-		GFF2267	0.69	-1.8
2,296,891	-		GFF2267	0.71	-0.2
2,296,927	-		GFF2267	0.73	-0.8
2,296,927	-		GFF2267	0.73	-2.4
2,296,934	+		GFF2267	0.74	+0.7
2,296,934	+		GFF2267	0.74	+1.7
2,296,934	+		GFF2267	0.74	-0.2
2,296,934	+		GFF2267	0.74	+0.8
2,296,942	-		GFF2267	0.74	+0.8
2,296,964	+		GFF2267	0.76	+0.9
2,296,984	+		GFF2267	0.77	+0.4
2,297,073	+		GFF2267	0.83	-0.5
2,297,091	+		GFF2267	0.84	+0.5
2,297,153	+		GFF2267	0.89	-2.0
2,297,156	-		GFF2267	0.89	+0.0
2,297,189	+				-2.8
2,297,189	+				-2.0
2,297,189	+				-1.4
2,297,196	-				-2.7
2,297,197	-				+0.2
2,297,197	-				-0.1
2,297,248	+				+0.9
2,297,259	+				+0.1
2,297,276	+				+0.0
2,297,276	+				-1.2
2,297,325	+				+0.2
2,297,430	+		GFF2268	0.12	+1.1
2,297,438	-		GFF2268	0.14	-1.6
2,297,443	-		GFF2268	0.15	+0.3
2,297,461	-		GFF2268	0.20	-0.4
2,297,468	+		GFF2268	0.21	+1.2
2,297,513	+		GFF2268	0.32	-0.9
2,297,513	+		GFF2268	0.32	-0.1
2,297,552	-		GFF2268	0.42	-0.7
2,297,566	+		GFF2268	0.45	-0.1
2,297,573	+		GFF2268	0.47	+1.1
2,297,581	-		GFF2268	0.49	-2.6
2,297,581	-		GFF2268	0.49	-1.0
2,297,591	-		GFF2268	0.51	-0.5
2,297,591	-		GFF2268	0.51	+0.9
2,297,591	-		GFF2268	0.51	+1.2
2,297,602	-		GFF2268	0.54	-0.1
2,297,754	+				-0.6
2,297,754	+				-0.7
2,297,759	+				-0.7
2,297,759	+				-1.3
2,297,767	-				+0.5
2,297,767	-				-1.1
2,297,767	-				-0.8
2,297,767	-				+0.1
2,297,767	-				-0.7
2,297,767	-				-1.4
2,297,767	-				+0.0
2,297,767	-				-1.0
2,297,823	-				-0.8
2,297,823	-				-2.0
2,297,916	+		GFF2269	0.18	-1.8
2,297,916	+		GFF2269	0.18	-0.7
2,297,929	-		GFF2269	0.20	+0.6
2,297,939	-		GFF2269	0.21	-1.0
2,297,959	-		GFF2269	0.23	-1.2
2,297,959	-		GFF2269	0.23	-0.9
2,297,976	-		GFF2269	0.25	-1.4
2,298,043	-		GFF2269	0.32	-0.6
2,298,054	+		GFF2269	0.34	-1.7
2,298,077	-		GFF2269	0.36	-0.7
2,298,146	-		GFF2269	0.44	-2.4
2,298,151	-		GFF2269	0.44	-1.5
2,298,151	-		GFF2269	0.44	-0.2
2,298,213	+		GFF2269	0.51	-0.2
2,298,301	+		GFF2269	0.61	+0.8
2,298,316	+		GFF2269	0.62	+1.3
2,298,316	+		GFF2269	0.62	-1.0
2,298,316	+		GFF2269	0.62	-0.9
2,298,316	+		GFF2269	0.62	-1.2