Strain Fitness in Sphingobium sp. HT1-2 around GFF2169

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,188,829	+		GFF2167	0.83	+0.5
2,188,836	+		GFF2167	0.85	+0.4
2,188,836	+		GFF2167	0.85	-1.5
2,188,844	-		GFF2167	0.86	-0.0
2,188,847	-		GFF2167	0.87	+0.4
2,188,849	+		GFF2167	0.87	-2.0
2,188,849	+		GFF2167	0.87	+1.2
2,188,857	-		GFF2167	0.88	-0.7
2,188,858	+		GFF2167	0.89	-0.3
2,188,867	+				-0.2
2,188,875	+				+0.1
2,188,875	+				-0.8
2,188,875	-				-1.3
2,188,883	-				-2.8
2,188,888	-				+0.4
2,188,893	+				+0.3
2,188,899	+				-0.3
2,188,906	-				+0.4
2,188,913	+				-1.5
2,188,931	+				-0.3
2,188,943	+				+0.3
2,188,943	+				-0.3
2,188,945	+				+1.4
2,188,974	-				+1.9
2,188,974	-				-0.4
2,188,981	+				+0.7
2,188,981	+				-0.2
2,188,996	+		GFF2168	0.11	-0.9
2,189,006	+		GFF2168	0.12	+0.9
2,189,007	+		GFF2168	0.13	+0.5
2,189,010	+		GFF2168	0.13	-0.9
2,189,010	+		GFF2168	0.13	-0.7
2,189,010	+		GFF2168	0.13	-0.2
2,189,018	-		GFF2168	0.14	+0.9
2,189,018	-		GFF2168	0.14	+0.7
2,189,044	+		GFF2168	0.18	+0.3
2,189,044	+		GFF2168	0.18	+0.5
2,189,044	+		GFF2168	0.18	-1.1
2,189,101	-		GFF2168	0.26	-0.9
2,189,101	-		GFF2168	0.26	+1.1
2,189,106	-		GFF2168	0.27	+0.4
2,189,119	-		GFF2168	0.29	-0.3
2,189,124	+		GFF2168	0.29	+0.3
2,189,140	+		GFF2168	0.32	-0.6
2,189,163	-		GFF2168	0.35	-0.2
2,189,168	-		GFF2168	0.36	-0.0
2,189,176	-		GFF2168	0.37	-0.4
2,189,192	-		GFF2168	0.39	-1.0
2,189,194	+		GFF2168	0.39	+1.2
2,189,201	+		GFF2168	0.40	-0.5
2,189,201	+		GFF2168	0.40	-1.7
2,189,202	-		GFF2168	0.40	+0.7
2,189,202	-		GFF2168	0.40	-0.6
2,189,206	+		GFF2168	0.41	+0.7
2,189,206	+		GFF2168	0.41	+0.7
2,189,218	+		GFF2168	0.43	-1.1
2,189,219	-		GFF2168	0.43	+0.9
2,189,219	-		GFF2168	0.43	-2.1
2,189,223	+		GFF2168	0.43	+0.6
2,189,247	-		GFF2168	0.47	+0.9
2,189,271	-		GFF2168	0.50	-0.4
2,189,292	-		GFF2168	0.53	-0.4
2,189,305	+		GFF2168	0.55	+0.4
2,189,307	-		GFF2168	0.56	-0.5
2,189,310	+		GFF2168	0.56	-1.9
2,189,310	+		GFF2168	0.56	+1.2
2,189,316	-		GFF2168	0.57	-1.5
2,189,318	-		GFF2168	0.57	-2.3
2,189,332	+		GFF2168	0.59	-0.5
2,189,343	+		GFF2168	0.61	+0.4
2,189,353	+		GFF2168	0.62	+0.2
2,189,353	+		GFF2168	0.62	+0.1
2,189,353	+		GFF2168	0.62	+0.7
2,189,361	-		GFF2168	0.63	+0.8
2,189,361	-		GFF2168	0.63	+0.2
2,189,361	-		GFF2168	0.63	+0.5
2,189,379	+		GFF2168	0.66	-0.5
2,189,382	+		GFF2168	0.66	-0.3
2,189,402	+		GFF2168	0.69	-0.0
2,189,404	+		GFF2168	0.69	+0.6
2,189,420	-		GFF2168	0.72	-1.5
2,189,425	+		GFF2168	0.72	-1.5
2,189,428	-		GFF2168	0.73	+1.1
2,189,433	-		GFF2168	0.74	-0.9
2,189,435	+		GFF2168	0.74	-1.8
2,189,441	-		GFF2168	0.75	-1.9
2,189,446	+		GFF2168	0.75	+1.7
2,189,454	-		GFF2168	0.77	-0.3
2,189,496	-		GFF2168	0.83	-0.2
2,189,516	-		GFF2168	0.85	-1.5
2,189,525	-		GFF2168	0.87	+0.4
2,189,528	+		GFF2168	0.87	-0.8
2,189,539	+		GFF2168	0.89	-0.0
2,189,539	+		GFF2168	0.89	-0.6
2,189,547	-		GFF2168	0.90	-0.1
2,189,557	+				+1.0
2,189,558	-				-0.6
2,189,564	+				+0.9
2,189,565	-				-1.7
2,189,572	-				-1.4
2,189,587	+				-1.0
2,189,595	-				-1.4
2,189,598	+				-1.5
2,189,606	-				+0.4
2,189,606	-				-0.1
2,189,606	-				-0.9
2,189,606	-				-0.7
2,189,606	-				-2.0
2,189,606	-				+1.1
2,189,619	-				-0.1
2,189,623	+				+0.1
2,189,626	-				-1.4
2,189,626	-				-0.8
2,189,631	-				-0.7
2,189,631	-				-0.1
2,189,631	-				+0.7
2,189,643	-				-0.4
2,189,669	-				+0.9
2,189,675	-				+0.6
2,189,741	-				-1.7
2,189,803	+				-1.0
2,189,825	+				+0.6
2,189,859	+		GFF2169	0.13	+1.0
2,189,859	+		GFF2169	0.13	+0.3
2,189,859	+		GFF2169	0.13	+0.4
2,189,862	-		GFF2169	0.14	-0.3
2,189,864	+		GFF2169	0.15	+1.5
2,189,864	+		GFF2169	0.15	-0.5
2,189,890	-		GFF2169	0.22	-1.5
2,189,901	-		GFF2169	0.25	+1.3
2,189,938	-		GFF2169	0.35	+0.6
2,189,949	-		GFF2169	0.38	-1.6
2,189,986	-		GFF2169	0.48	+0.4
2,189,988	+		GFF2169	0.49	+1.0
2,189,988	+		GFF2169	0.49	+0.7
2,189,988	+		GFF2169	0.49	-1.0
2,189,996	-		GFF2169	0.51	+0.6
2,189,996	-		GFF2169	0.51	+0.5
2,189,996	-		GFF2169	0.51	-0.4
2,189,996	-		GFF2169	0.51	+0.3
2,189,996	-		GFF2169	0.51	+0.6
2,189,996	-		GFF2169	0.51	-0.3
2,189,996	-		GFF2169	0.51	-1.1
2,189,996	-		GFF2169	0.51	-0.7
2,190,037	+		GFF2169	0.62	+0.3
2,190,068	+		GFF2169	0.70	+0.7
2,190,076	-		GFF2169	0.73	-0.3
2,190,087	-		GFF2169	0.76	+1.5
2,190,110	-		GFF2169	0.82	-1.5
2,190,113	+		GFF2169	0.83	-1.3
2,190,113	+		GFF2169	0.83	+0.3
2,190,121	-		GFF2169	0.85	+0.1
2,190,121	-		GFF2169	0.85	-0.6
2,190,121	-		GFF2169	0.85	-0.4
2,190,128	-		GFF2169	0.87	-0.3
2,190,146	-				-1.5
2,190,162	+				+0.4
2,190,177	-				+0.9
2,190,177	-				+1.7
2,190,177	-				+0.7
2,190,177	-				-0.6
2,190,182	-				+1.0
2,190,182	-				+0.3
2,190,182	-				-0.3
2,190,182	-				+0.7
2,190,182	-				+0.8
2,190,182	-				+1.1
2,190,187	-				+0.4
2,190,187	-				-0.9
2,190,194	-				-0.6
2,190,211	-				+1.0
2,190,218	-				-0.3
2,190,218	-				-1.1
2,190,218	-				+0.9
2,190,223	-				+0.3
2,190,223	-				+0.1
2,190,248	-				-2.0
2,190,252	+				+0.3
2,190,252	+				+0.9
2,190,252	+				+0.2
2,190,258	-				+0.6
2,190,258	-				+0.3
2,190,260	-				-1.5
2,190,260	-				+2.1
2,190,260	-				-0.2
2,190,260	-				-1.0
2,190,301	-				-1.3
2,190,304	+				+0.5
2,190,319	+		GFF2170	0.11	+0.5
2,190,320	-		GFF2170	0.11	+0.2
2,190,324	+		GFF2170	0.12	-1.0
2,190,327	-		GFF2170	0.13	-0.1
2,190,327	-		GFF2170	0.13	-0.4
2,190,327	-		GFF2170	0.13	-0.1
2,190,328	-		GFF2170	0.13	-0.6
2,190,336	-		GFF2170	0.15	+0.8
2,190,339	+		GFF2170	0.16	-1.3
2,190,356	-		GFF2170	0.19	+0.3
2,190,356	-		GFF2170	0.19	-1.2
2,190,358	+		GFF2170	0.20	+0.3
2,190,358	+		GFF2170	0.20	-1.0
2,190,358	+		GFF2170	0.20	-1.5
2,190,366	-		GFF2170	0.22	-1.3
2,190,366	-		GFF2170	0.22	+0.7
2,190,366	-		GFF2170	0.22	-1.3
2,190,369	+		GFF2170	0.22	-1.3
2,190,377	-		GFF2170	0.24	-2.1
2,190,391	-		GFF2170	0.27	-1.6
2,190,412	+		GFF2170	0.32	+1.1
2,190,417	+		GFF2170	0.33	-2.1
2,190,417	+		GFF2170	0.33	-2.1
2,190,417	+		GFF2170	0.33	+0.3
2,190,420	-		GFF2170	0.34	-1.7
2,190,422	+		GFF2170	0.34	-0.9
2,190,425	-		GFF2170	0.35	+0.6
2,190,425	-		GFF2170	0.35	-1.6
2,190,430	-		GFF2170	0.36	-0.9
2,190,440	-		GFF2170	0.38	+0.9
2,190,443	+		GFF2170	0.39	+0.7
2,190,451	-		GFF2170	0.41	+0.4
2,190,451	-		GFF2170	0.41	+0.6
2,190,451	-		GFF2170	0.41	-0.3
2,190,451	-		GFF2170	0.41	-1.1
2,190,468	+		GFF2170	0.45	-2.1
2,190,468	-		GFF2170	0.45	+0.8
2,190,478	+		GFF2170	0.47	-1.0
2,190,494	-		GFF2170	0.50	+0.6
2,190,495	+		GFF2170	0.51	+1.7
2,190,503	-		GFF2170	0.52	-1.0
2,190,509	-		GFF2170	0.54	-0.7
2,190,509	-		GFF2170	0.54	-0.2
2,190,531	-		GFF2170	0.59	-0.6
2,190,551	+		GFF2170	0.63	-1.6
2,190,559	-		GFF2170	0.65	-0.6
2,190,581	+		GFF2170	0.70	+0.7
2,190,587	-		GFF2170	0.71	+1.6
2,190,588	-		GFF2170	0.71	-1.3
2,190,588	-		GFF2170	0.71	-0.4
2,190,589	-		GFF2170	0.72	-2.8
2,190,589	-		GFF2170	0.72	+1.2
2,190,589	-		GFF2170	0.72	-0.3
2,190,594	-		GFF2170	0.73	+0.1
2,190,610	-		GFF2170	0.76	+0.7
2,190,625	+		GFF2170	0.80	+0.6
2,190,638	+		GFF2170	0.83	-0.1
2,190,639	-		GFF2170	0.83	-1.1
2,190,643	+		GFF2170	0.84	+0.9
2,190,643	+		GFF2170	0.84	-0.6
2,190,643	+		GFF2170	0.84	-1.8
2,190,644	+		GFF2170	0.84	+0.7
2,190,646	-		GFF2170	0.84	-0.2
2,190,650	+		GFF2170	0.85	-1.7
2,190,651	-		GFF2170	0.85	+1.2
2,190,651	-		GFF2170	0.85	+0.8
2,190,652	-		GFF2170	0.86	-0.6
2,190,652	-		GFF2170	0.86	+0.6
2,190,652	-		GFF2170	0.86	+0.0
2,190,652	-		GFF2170	0.86	-0.4
2,190,694	-				-0.0
2,190,715	+				+1.6
2,190,722	-				-0.7
2,190,723	+				-0.5
2,190,725	+				+0.5
2,190,725	+				-0.1
2,190,733	-				-0.1
2,190,733	-				+0.2
2,190,739	+				-2.1
2,190,744	+				+0.2
2,190,744	+				+0.9
2,190,744	+				-0.7
2,190,744	+				-1.1
2,190,744	+				-0.6
2,190,744	+				-2.2
2,190,752	-				-1.5
2,190,752	-				-1.2
2,190,752	-				+0.1
2,190,752	-				-0.1
2,190,758	-				-0.1
2,190,761	+				-0.3
2,190,770	+				+0.3
2,190,778	-				+0.9
2,190,778	-				-1.5
2,190,805	-				+0.3
2,190,805	-				+0.3
2,190,805	-				+0.1
2,190,805	-				-0.7
2,190,807	+				+0.3
2,190,807	+				-1.0
2,190,810	+				-0.7
2,190,810	+				-0.5
2,190,810	+				-0.3
2,190,810	-				+0.9
2,190,818	-		GFF2171	0.10	-1.0
2,190,818	-		GFF2171	0.10	+0.4
2,190,818	-		GFF2171	0.10	-1.6
2,190,818	-		GFF2171	0.10	-0.5
2,190,822	+		GFF2171	0.11	-0.4
2,190,830	-		GFF2171	0.11	-1.7
2,190,830	-		GFF2171	0.11	-0.1
2,190,838	-		GFF2171	0.12	+0.9
2,190,844	-		GFF2171	0.13	-0.0
2,190,855	+		GFF2171	0.14	-2.2
2,190,868	+		GFF2171	0.15	-0.6
2,190,876	-		GFF2171	0.16	+0.4
2,190,888	-		GFF2171	0.17	+0.4
2,190,904	+		GFF2171	0.19	+1.2
2,190,904	+		GFF2171	0.19	+0.8
2,190,912	-		GFF2171	0.19	-1.4
2,190,947	+		GFF2171	0.23	-0.9
2,190,947	+		GFF2171	0.23	+0.2
2,190,947	+		GFF2171	0.23	+1.0
2,190,948	+		GFF2171	0.23	+0.2
2,190,949	+		GFF2171	0.23	+1.1
2,190,951	-		GFF2171	0.23	-2.1
2,190,951	-		GFF2171	0.23	+0.6
2,190,957	-		GFF2171	0.24	-2.5
2,190,964	-		GFF2171	0.24	-1.7
2,190,982	+		GFF2171	0.26	+0.8
2,190,985	+		GFF2171	0.27	+0.8
2,190,993	+		GFF2171	0.27	-1.6
2,190,993	+		GFF2171	0.27	+0.1
2,190,993	-		GFF2171	0.27	-2.3
2,191,042	+		GFF2171	0.32	+0.1
2,191,042	+		GFF2171	0.32	-0.8
2,191,072	-		GFF2171	0.35	+0.0
2,191,097	+		GFF2171	0.37	-0.1
2,191,097	+		GFF2171	0.37	+0.1
2,191,105	-		GFF2171	0.38	+1.5
2,191,109	+		GFF2171	0.39	-0.8
2,191,109	+		GFF2171	0.39	-1.4
2,191,117	-		GFF2171	0.39	+0.4
2,191,118	+		GFF2171	0.39	-1.1
2,191,125	+		GFF2171	0.40	+0.3
2,191,125	+		GFF2171	0.40	-0.4
2,191,126	-		GFF2171	0.40	+0.8
2,191,126	-		GFF2171	0.40	+1.1
2,191,133	+		GFF2171	0.41	-0.6
2,191,133	+		GFF2171	0.41	+0.2
2,191,133	+		GFF2171	0.41	-1.1
2,191,133	+		GFF2171	0.41	-0.9
2,191,133	-		GFF2171	0.41	-0.8
2,191,141	-		GFF2171	0.42	+1.1
2,191,141	-		GFF2171	0.42	+1.0
2,191,152	-		GFF2171	0.43	-1.6
2,191,161	-		GFF2171	0.44	-1.9
2,191,169	-		GFF2171	0.44	+0.2
2,191,169	-		GFF2171	0.44	-0.5