Strain Fitness in Sphingobium sp. HT1-2 around GFF2101

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,136,315	+		GFF2100	0.39	-2.0
2,136,318	+		GFF2100	0.39	-2.7
2,136,320	+		GFF2100	0.39	+0.1
2,136,323	-		GFF2100	0.40	-0.3
2,136,328	+		GFF2100	0.40	-0.4
2,136,328	+		GFF2100	0.40	-0.1
2,136,328	-		GFF2100	0.40	-0.3
2,136,330	+		GFF2100	0.40	-0.4
2,136,330	+		GFF2100	0.40	-1.5
2,136,336	-		GFF2100	0.41	+0.0
2,136,336	-		GFF2100	0.41	-1.2
2,136,336	-		GFF2100	0.41	+0.2
2,136,338	-		GFF2100	0.41	+0.5
2,136,369	-		GFF2100	0.43	+0.7
2,136,392	+		GFF2100	0.45	-0.9
2,136,392	+		GFF2100	0.45	-1.1
2,136,394	-		GFF2100	0.45	-0.9
2,136,415	+		GFF2100	0.46	-1.8
2,136,425	+		GFF2100	0.47	-0.5
2,136,428	-		GFF2100	0.47	+0.3
2,136,433	+		GFF2100	0.48	-0.5
2,136,441	-		GFF2100	0.48	+0.7
2,136,500	-		GFF2100	0.53	+0.7
2,136,561	+		GFF2100	0.57	-0.1
2,136,562	-		GFF2100	0.57	+1.0
2,136,569	+		GFF2100	0.58	+0.2
2,136,586	+		GFF2100	0.59	-0.0
2,136,601	+		GFF2100	0.60	-1.3
2,136,607	+		GFF2100	0.60	-0.1
2,136,701	+		GFF2100	0.67	+1.0
2,136,710	+		GFF2100	0.68	-1.0
2,136,718	-		GFF2100	0.69	-0.1
2,136,793	+		GFF2100	0.74	-1.1
2,136,793	+		GFF2100	0.74	-1.5
2,136,793	+		GFF2100	0.74	+0.2
2,136,801	-		GFF2100	0.75	-0.4
2,136,801	-		GFF2100	0.75	+0.2
2,136,811	-		GFF2100	0.75	-0.1
2,136,823	+		GFF2100	0.76	-0.9
2,136,857	+		GFF2100	0.79	-0.5
2,136,865	-		GFF2100	0.79	+0.4
2,136,882	-		GFF2100	0.81	-0.7
2,136,900	-		GFF2100	0.82	-0.3
2,136,902	+		GFF2100	0.82	-1.3
2,136,909	+		GFF2100	0.83	+0.3
2,136,910	-		GFF2100	0.83	-1.5
2,136,917	-		GFF2100	0.83	-0.0
2,136,925	-		GFF2100	0.84	-1.5
2,136,925	-		GFF2100	0.84	-0.4
2,136,925	-		GFF2100	0.84	-1.8
2,136,980	+		GFF2100	0.88	-0.1
2,136,988	+		GFF2100	0.88	-0.1
2,136,992	+		GFF2100	0.89	-1.8
2,136,996	-		GFF2100	0.89	-1.0
2,137,000	-		GFF2100	0.89	-0.6
2,137,058	+				-1.3
2,137,058	+				+0.7
2,137,104	+				-1.3
2,137,204	-				-0.1
2,137,211	-				-1.1
2,137,285	-				+1.0
2,137,285	-				-1.3
2,137,293	+				-0.5
2,137,303	-				-0.6
2,137,344	+				-0.3
2,137,352	-				-0.1
2,137,371	-				-2.0
2,137,373	+				-0.7
2,137,373	+				+1.2
2,137,381	-				+1.4
2,137,381	-				-0.4
2,137,434	+		GFF2101	0.12	-0.7
2,137,437	+		GFF2101	0.12	-1.3
2,137,442	-		GFF2101	0.12	-0.2
2,137,451	+		GFF2101	0.13	-0.3
2,137,464	+		GFF2101	0.14	+0.8
2,137,469	+		GFF2101	0.15	+0.4
2,137,472	-		GFF2101	0.15	+0.7
2,137,479	+		GFF2101	0.16	+0.1
2,137,487	+		GFF2101	0.16	+0.1
2,137,487	+		GFF2101	0.16	+0.4
2,137,487	-		GFF2101	0.16	-0.2
2,137,487	-		GFF2101	0.16	-0.2
2,137,489	+		GFF2101	0.16	+0.2
2,137,489	+		GFF2101	0.16	+1.0
2,137,489	+		GFF2101	0.16	-1.0
2,137,489	+		GFF2101	0.16	-0.7
2,137,489	+		GFF2101	0.16	-1.4
2,137,489	+		GFF2101	0.16	+0.6
2,137,489	+		GFF2101	0.16	+0.4
2,137,494	-		GFF2101	0.17	-0.4
2,137,497	-		GFF2101	0.17	+1.1
2,137,497	-		GFF2101	0.17	-1.8
2,137,497	-		GFF2101	0.17	+0.2
2,137,497	-		GFF2101	0.17	+0.2
2,137,497	-		GFF2101	0.17	-2.6
2,137,510	+		GFF2101	0.18	-1.6
2,137,510	+		GFF2101	0.18	-0.6
2,137,510	+		GFF2101	0.18	-0.3
2,137,510	+		GFF2101	0.18	+1.2
2,137,513	-		GFF2101	0.19	-0.3
2,137,518	-		GFF2101	0.19	+1.1
2,137,518	-		GFF2101	0.19	-1.3
2,137,522	+		GFF2101	0.19	-0.6
2,137,522	+		GFF2101	0.19	-0.3
2,137,542	+		GFF2101	0.21	+1.1
2,137,572	+		GFF2101	0.24	+0.4
2,137,572	+		GFF2101	0.24	+0.1
2,137,572	+		GFF2101	0.24	+1.2
2,137,572	+		GFF2101	0.24	-0.2
2,137,572	+		GFF2101	0.24	-1.9
2,137,572	+		GFF2101	0.24	+0.7
2,137,572	+		GFF2101	0.24	-0.4
2,137,572	+		GFF2101	0.24	+0.1
2,137,575	-		GFF2101	0.24	+0.3
2,137,580	-		GFF2101	0.24	-1.2
2,137,580	-		GFF2101	0.24	-0.2
2,137,580	-		GFF2101	0.24	-0.5
2,137,582	-		GFF2101	0.24	-1.9
2,137,616	-		GFF2101	0.27	-1.9
2,137,629	+		GFF2101	0.28	+0.1
2,137,629	+		GFF2101	0.28	-2.1
2,137,637	-		GFF2101	0.29	-2.3
2,137,637	-		GFF2101	0.29	-0.6
2,137,669	+		GFF2101	0.32	-1.9
2,137,731	-		GFF2101	0.37	-0.1
2,137,752	+		GFF2101	0.39	+0.8
2,137,773	+		GFF2101	0.41	+0.4
2,137,813	-		GFF2101	0.44	-0.1
2,137,839	+		GFF2101	0.46	+0.3
2,137,840	+		GFF2101	0.46	-0.1
2,137,840	+		GFF2101	0.46	-1.1
2,137,845	+		GFF2101	0.47	-0.0
2,137,848	-		GFF2101	0.47	-1.5
2,137,850	+		GFF2101	0.47	-0.4
2,137,864	+		GFF2101	0.48	+0.4
2,137,896	+		GFF2101	0.51	+0.5
2,137,903	+		GFF2101	0.52	-2.0
2,137,923	+		GFF2101	0.53	-1.9
2,137,926	-		GFF2101	0.54	+0.8
2,137,931	+		GFF2101	0.54	+0.9
2,137,936	+		GFF2101	0.55	-1.6
2,137,944	-		GFF2101	0.55	-1.4
2,137,969	+		GFF2101	0.57	+0.1
2,137,977	-		GFF2101	0.58	+0.1
2,137,977	-		GFF2101	0.58	-1.3
2,137,985	+		GFF2101	0.59	+0.9
2,137,993	+		GFF2101	0.59	-1.1
2,137,993	+		GFF2101	0.59	+0.2
2,137,995	+		GFF2101	0.60	+0.5
2,137,995	+		GFF2101	0.60	-0.4
2,138,003	-		GFF2101	0.60	-0.1
2,138,005	+		GFF2101	0.60	-0.7
2,138,047	+		GFF2101	0.64	-0.2
2,138,050	-		GFF2101	0.64	+1.2
2,138,119	+		GFF2101	0.70	-1.0
2,138,158	+		GFF2101	0.73	-2.1
2,138,158	+		GFF2101	0.73	-0.6
2,138,158	+		GFF2101	0.73	+0.7
2,138,163	+		GFF2101	0.74	+1.9
2,138,163	+		GFF2101	0.74	+0.3
2,138,168	-		GFF2101	0.74	+1.2
2,138,173	+		GFF2101	0.75	+0.4
2,138,181	-		GFF2101	0.75	-1.1
2,138,191	-		GFF2101	0.76	-0.4
2,138,191	-		GFF2101	0.76	+1.8
2,138,226	+		GFF2101	0.79	-1.3
2,138,226	+		GFF2101	0.79	-1.2
2,138,226	+		GFF2101	0.79	+0.0
2,138,229	-		GFF2101	0.79	+0.9
2,138,234	-		GFF2101	0.80	-0.0
2,138,238	-		GFF2101	0.80	+0.7
2,138,246	+		GFF2101	0.81	+0.8
2,138,261	+		GFF2101	0.82	+1.4
2,138,261	-		GFF2101	0.82	-0.2
2,138,306	+		GFF2101	0.86	-0.9
2,138,306	+		GFF2101	0.86	-0.9
2,138,306	+		GFF2101	0.86	+0.5
2,138,306	+		GFF2101	0.86	-2.1
2,138,306	+		GFF2101	0.86	-0.4
2,138,306	+		GFF2101	0.86	-0.5
2,138,307	+		GFF2101	0.86	-1.1
2,138,307	+		GFF2101	0.86	+0.9
2,138,307	+		GFF2101	0.86	-0.8
2,138,307	-		GFF2101	0.86	-1.2
2,138,311	+		GFF2101	0.86	-0.5
2,138,314	-		GFF2101	0.87	-1.4
2,138,314	-		GFF2101	0.87	+1.4
2,138,314	-		GFF2101	0.87	-2.6
2,138,327	+		GFF2101	0.88	+0.1
2,138,332	+		GFF2101	0.88	+0.5
2,138,340	-		GFF2101	0.89	+1.0
2,138,340	-		GFF2101	0.89	+0.2
2,138,340	-		GFF2101	0.89	-1.1
2,138,340	-		GFF2101	0.89	+0.5
2,138,354	+				-1.9
2,138,360	+				-1.1
2,138,415	-				-0.6
2,138,430	+				-2.6
2,138,437	-				-0.0
2,138,437	-				-0.6
2,138,437	-				-0.6
2,138,465	+				+0.2
2,138,465	+				+0.3
2,138,465	+				+0.1
2,138,465	+				-2.0
2,138,473	-				-0.6
2,138,473	-				+1.3
2,138,473	-				-1.4
2,138,473	-				-1.9
2,138,477	+				-1.6
2,138,495	-				-0.2
2,138,566	-				-0.4
2,138,608	+				+0.1
2,138,619	+				-0.3
2,138,619	+				-1.0
2,138,619	+				-0.1
2,138,619	+				-0.6
2,138,622	-				-0.5
2,138,622	-				-2.3
2,138,627	-				+1.0
2,138,627	-				+1.3
2,138,627	-				-0.1
2,138,627	-				+1.1
2,138,627	-				+0.9
2,138,629	-				+0.1
2,138,636	+				-0.4
2,138,636	+				+1.1
2,138,639	+				+1.3
2,138,644	-				-0.0
2,138,676	-				-2.1
2,138,678	-				+1.7
2,138,686	+				-0.0
2,138,686	+				-0.4
2,138,686	+				+1.6
2,138,686	+				+1.0
2,138,686	+				+0.6
2,138,686	+				-0.3
2,138,686	+				-0.0
2,138,686	+				+0.1
2,138,686	+				+2.8
2,138,686	+				-0.4
2,138,686	+				-0.0
2,138,686	+				+0.6
2,138,686	+				-0.1
2,138,686	+				-1.9
2,138,686	+				-0.5
2,138,686	+				-0.2
2,138,686	+				+0.2
2,138,686	+				+0.1
2,138,686	+				-0.3
2,138,686	+				+0.4
2,138,686	+				-1.7
2,138,686	+				-0.0
2,138,686	+				+0.3
2,138,686	+				-2.0
2,138,686	+				-2.1
2,138,686	+				-0.6
2,138,686	+				-2.1
2,138,686	+				-1.0
2,138,686	+				-0.1
2,138,686	+				+0.7
2,138,686	+				-0.3
2,138,686	+				-0.2
2,138,686	+				-0.4
2,138,686	+				-1.5
2,138,686	+				-1.5
2,138,686	+				-0.0
2,138,686	+				+0.4
2,138,686	+				-0.5
2,138,686	+				-1.1
2,138,686	+				-0.6
2,138,686	+				-0.4
2,138,686	+				-0.2
2,138,686	+				-1.1
2,138,686	+				+0.3
2,138,686	+				-1.3
2,138,686	+				-1.3
2,138,686	+				+1.2
2,138,686	+				+0.1
2,138,686	+				-1.0
2,138,686	+				-0.3
2,138,686	+				+0.2
2,138,686	+				-0.6
2,138,686	+				-0.6
2,138,686	+				-0.2
2,138,686	+				-0.4
2,138,686	+				+1.0
2,138,686	+				-1.2
2,138,686	+				-0.6
2,138,686	+				-0.4
2,138,686	+				+1.8
2,138,686	+				-0.6
2,138,686	+				-1.5
2,138,686	+				-0.3
2,138,686	+				-2.3
2,138,686	+				-0.9
2,138,686	+				-2.1
2,138,686	+				-0.2
2,138,686	+				-0.5
2,138,686	+				+0.2
2,138,686	+				-2.0
2,138,686	+				-0.8
2,138,686	+				-0.8
2,138,686	+				-1.7
2,138,686	+				+0.0
2,138,686	+				+0.7
2,138,686	+				+0.8
2,138,686	+				-0.6
2,138,686	+				+1.0
2,138,686	+				-1.1
2,138,686	+				-0.2
2,138,686	+				+1.0
2,138,686	+				+0.7
2,138,686	+				-1.3
2,138,686	+				+1.7
2,138,686	+				-1.2
2,138,686	+				-0.3
2,138,686	+				-0.2
2,138,686	+				+0.9
2,138,686	+				-0.2
2,138,686	+				+1.2
2,138,686	+				+0.3
2,138,686	+				-1.3
2,138,686	+				-0.6
2,138,686	+				-0.8
2,138,686	+				-2.0
2,138,686	+				-0.2
2,138,686	-				-0.9
2,138,686	-				-0.0
2,138,689	-				-0.2
2,138,694	-				-0.1
2,138,694	-				+0.6
2,138,694	-				-1.8
2,138,694	-				-1.6
2,138,694	-				-0.7
2,138,694	-				+0.0
2,138,694	-				-2.1
2,138,694	-				-2.6
2,138,694	-				-0.7
2,138,694	-				-0.0
2,138,694	-				-1.4
2,138,694	-				-2.4
2,138,694	-				-1.5
2,138,694	-				-1.2
2,138,694	-				-0.8
2,138,694	-				+0.3
2,138,694	-				-1.4
2,138,694	-				-0.6
2,138,694	-				+1.0
2,138,694	-				+0.4
2,138,694	-				+1.7
2,138,694	-				-1.3
2,138,694	-				-0.9
2,138,694	-				-1.1
2,138,694	-				+1.1
2,138,694	-				-0.4
2,138,694	-				+1.4
2,138,694	-				-0.7
2,138,694	-				-0.2
2,138,694	-				-1.4
2,138,694	-				-0.7
2,138,694	-				-1.6
2,138,694	-				-2.3
2,138,694	-				-0.3
2,138,694	-				+0.5
2,138,694	-				-0.6
2,138,694	-				-0.5
2,138,694	-				-1.2
2,138,694	-				-0.1
2,138,694	-				-2.4
2,138,694	-				-0.8
2,138,694	-				-1.3
2,138,694	-				+0.2
2,138,694	-				-0.1
2,138,694	-				-1.2
2,138,694	-				+0.6
2,138,694	-				-0.5
2,138,694	-				-2.3
2,138,694	-				-0.4
2,138,694	-				-0.1
2,138,694	-				-0.4
2,138,694	-				-1.5
2,138,694	-				+0.9
2,138,694	-				-1.5
2,138,694	-				-0.3
2,138,694	-				-1.4
2,138,694	-				-0.1
2,138,694	-				-0.7
2,138,694	-				-2.2
2,138,694	-				-1.1
2,138,694	-				+1.1
2,138,694	-				+0.3
2,138,694	-				-0.8
2,138,694	-				+1.3
2,138,694	-				+0.2
2,138,694	-				-0.7
2,138,694	-				-0.4
2,138,694	-				-1.7
2,138,694	-				+0.2
2,138,694	-				-0.3
2,138,694	-				+0.4
2,138,694	-				-0.3
2,138,694	-				+0.9
2,138,694	-				-1.5
2,138,694	-				-0.2
2,138,694	-				-1.1
2,138,694	-				-2.0
2,138,694	-				+0.5
2,138,694	-				-1.3
2,138,694	-				-0.2
2,138,694	-				+0.4
2,138,694	-				-0.2
2,138,694	-				-0.1
2,138,694	-				+0.8
2,138,694	-				+0.5
2,138,694	-				-2.0
2,138,694	-				+0.5
2,138,694	-				-1.5
2,138,694	-				-0.1
2,138,694	-				+0.4
2,138,694	-				+0.4
2,138,694	-				-0.1
2,138,694	-				-1.8
2,138,696	-				-0.2
2,138,716	+				-0.1
2,138,718	-				+0.9
2,138,771	-				+1.0
2,138,772	+				+0.3
2,138,772	+				+0.2
2,138,783	+				-0.7
2,138,791	-				-1.9
2,138,800	-				+0.3
2,138,803	+				-1.1
2,138,825	-				-1.6
2,138,870	+				+1.4
2,138,870	+				+1.9
2,138,870	+				-0.4
2,138,878	-				-0.3
2,138,878	-				+0.8
2,138,879	-				+0.3
2,138,886	-				+0.2
2,138,911	+				-1.4
2,138,930	+				-0.0
2,138,933	-				-0.8
2,138,936	+				+1.1
2,138,946	+				-0.4
2,138,971	-				+0.6
2,138,988	+				+0.8
2,138,988	+				-2.1
2,138,988	+				-0.1
2,138,993	+				+0.1
2,138,993	+				-3.0
2,138,996	-				+1.0
2,138,996	-				+0.4
2,139,001	-				-0.9
2,139,002	-				-0.9
2,139,009	+				+0.7
2,139,009	+				+0.1
2,139,009	+				-1.5
2,139,009	-				+1.4
2,139,017	-				-2.1
2,139,017	-				-1.1
2,139,017	-				+0.7
2,139,017	-				-1.5
2,139,022	-				-0.8
2,139,132	-				+0.0
2,139,138	-				+0.2
2,139,144	-				-1.9
2,139,144	-				-1.8
2,139,233	+				+1.2
2,139,240	+				+0.8
2,139,263	+				-1.4
2,139,265	+				-1.7
2,139,265	+				+0.2
2,139,265	+				+0.2
2,139,265	+				-2.4
2,139,273	-				+1.5
2,139,273	-				-0.9
2,139,273	-				-0.1
2,139,312	+		GFF2102	0.15	-0.7
2,139,312	+		GFF2102	0.15	-1.1
2,139,313	-		GFF2102	0.15	+0.9
2,139,320	-		GFF2102	0.18	-1.7
2,139,320	-		GFF2102	0.18	-0.3
2,139,320	-		GFF2102	0.18	-0.2
2,139,325	-		GFF2102	0.20	+0.6
2,139,337	+		GFF2102	0.24	-1.1
2,139,341	-		GFF2102	0.26	-1.4
2,139,347	+		GFF2102	0.28	-1.1
2,139,355	-		GFF2102	0.31	+0.6
2,139,357	+		GFF2102	0.31	-1.9
2,139,360	-		GFF2102	0.33	+0.2
2,139,365	-		GFF2102	0.34	+0.8
2,139,370	-		GFF2102	0.36	-0.1
2,139,377	+		GFF2102	0.39	-1.3
2,139,379	+		GFF2102	0.40	+0.3
2,139,386	-		GFF2102	0.42	-0.1
2,139,393	+		GFF2102	0.45	-0.3
2,139,445	-		GFF2102	0.64	+1.3
2,139,466	+		GFF2102	0.72	-0.0