Strain Fitness in Sphingobium sp. HT1-2 around GFF2097

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,131,844	-		GFF2095	0.11	-0.1
2,131,844	-		GFF2095	0.11	-0.1
2,131,865	-		GFF2095	0.14	-0.9
2,131,867	+		GFF2095	0.14	-0.6
2,131,890	+		GFF2095	0.17	-1.6
2,131,890	+		GFF2095	0.17	-0.7
2,131,898	-		GFF2095	0.18	-0.5
2,131,899	+		GFF2095	0.18	-0.1
2,131,950	-		GFF2095	0.24	+0.6
2,131,953	+		GFF2095	0.24	-0.5
2,131,961	-		GFF2095	0.25	-1.4
2,131,966	+		GFF2095	0.26	-2.2
2,132,008	+		GFF2095	0.31	-0.7
2,132,044	+		GFF2095	0.35	+0.9
2,132,045	-		GFF2095	0.35	+0.6
2,132,053	+		GFF2095	0.36	+1.1
2,132,053	+		GFF2095	0.36	+0.7
2,132,053	+		GFF2095	0.36	-1.1
2,132,053	+		GFF2095	0.36	-1.9
2,132,053	+		GFF2095	0.36	+0.1
2,132,061	-		GFF2095	0.37	-1.4
2,132,061	-		GFF2095	0.37	+1.3
2,132,061	-		GFF2095	0.37	+0.6
2,132,061	-		GFF2095	0.37	-1.1
2,132,063	+		GFF2095	0.37	-1.4
2,132,063	+		GFF2095	0.37	-0.9
2,132,063	+		GFF2095	0.37	-0.6
2,132,063	+		GFF2095	0.37	-1.4
2,132,063	+		GFF2095	0.37	+1.3
2,132,063	+		GFF2095	0.37	-0.3
2,132,063	+		GFF2095	0.37	+0.7
2,132,063	+		GFF2095	0.37	+0.3
2,132,063	+		GFF2095	0.37	-1.1
2,132,071	-		GFF2095	0.38	-0.4
2,132,080	+		GFF2095	0.39	-1.9
2,132,080	-		GFF2095	0.39	-1.2
2,132,105	-		GFF2095	0.42	-0.0
2,132,152	+		GFF2095	0.48	+0.1
2,132,153	+		GFF2095	0.48	-1.1
2,132,161	-		GFF2095	0.49	-0.0
2,132,161	-		GFF2095	0.49	+0.1
2,132,169	-		GFF2095	0.50	-1.3
2,132,171	-		GFF2095	0.50	-0.6
2,132,386	+		GFF2095	0.76	-1.7
2,132,386	+		GFF2095	0.76	-0.7
2,132,394	-		GFF2095	0.76	-1.1
2,132,440	+		GFF2095	0.82	-0.7
2,132,440	-		GFF2095	0.82	-2.3
2,132,446	-		GFF2095	0.83	-0.0
2,132,448	-		GFF2095	0.83	+0.1
2,132,461	-		GFF2095	0.84	+0.0
2,132,463	-		GFF2095	0.85	-0.3
2,132,483	-		GFF2095	0.87	-0.1
2,132,493	-		GFF2095	0.88	-0.4
2,132,498	-		GFF2095	0.89	-0.3
2,132,503	-		GFF2095	0.89	-0.7
2,132,506	+		GFF2095	0.90	+0.5
2,132,511	+				+0.4
2,132,514	-				-1.3
2,132,523	+				-0.3
2,132,523	+				-1.1
2,132,523	+				-1.3
2,132,523	+				-0.9
2,132,523	+				-0.2
2,132,524	-				-1.0
2,132,531	-				+1.8
2,132,531	-				-0.7
2,132,531	-				+0.4
2,132,531	-				-0.2
2,132,531	-				-0.1
2,132,531	-				-0.8
2,132,531	-				-0.2
2,132,531	-				+0.7
2,132,531	-				-0.3
2,132,533	+				+0.9
2,132,536	-				-0.7
2,132,541	-				-1.9
2,132,542	+				-0.6
2,132,542	+				+0.1
2,132,550	-				-1.9
2,132,636	-				+0.4
2,132,637	+				-0.7
2,132,665	+		GFF2096	0.29	-0.2
2,132,668	-		GFF2096	0.32	-0.4
2,132,668	-		GFF2096	0.32	+0.9
2,132,687	+		GFF2096	0.47	+0.2
2,132,697	+		GFF2096	0.56	-0.6
2,132,705	+		GFF2096	0.62	+0.7
2,132,734	+		GFF2096	0.87	-0.8
2,132,744	+				+1.5
2,132,772	-				+0.3
2,132,805	-				-1.1
2,132,805	-				+0.6
2,132,817	+				-1.1
2,132,836	-				+0.1
2,132,845	+				-2.4
2,132,845	+				-0.7
2,132,845	+				-1.7
2,132,845	+				-0.0
2,132,853	-				-0.9
2,132,853	-				-1.3
2,132,868	-				-2.4
2,132,868	-				+0.4
2,132,888	+				+0.3
2,132,888	+				-0.1
2,132,891	-				-0.1
2,132,893	+				-0.1
2,132,896	-				-0.8
2,132,898	+				-0.0
2,132,901	-				-0.5
2,132,901	-				+1.1
2,132,906	-				-1.1
2,132,943	+				+0.6
2,132,969	+		GFF2097	0.12	-0.0
2,132,977	-		GFF2097	0.13	+1.2
2,132,980	+		GFF2097	0.13	-0.6
2,133,007	+		GFF2097	0.16	-0.4
2,133,023	+		GFF2097	0.17	-1.1
2,133,073	+		GFF2097	0.22	-0.1
2,133,081	-		GFF2097	0.23	-1.7
2,133,091	-		GFF2097	0.24	+0.6
2,133,093	+		GFF2097	0.24	+0.9
2,133,101	-		GFF2097	0.25	-0.2
2,133,103	-		GFF2097	0.25	+0.3
2,133,147	-		GFF2097	0.29	-0.1
2,133,177	-		GFF2097	0.32	+1.1
2,133,194	+		GFF2097	0.34	+0.5
2,133,194	+		GFF2097	0.34	-1.1
2,133,194	+		GFF2097	0.34	-1.1
2,133,194	+		GFF2097	0.34	-0.0
2,133,194	+		GFF2097	0.34	-2.1
2,133,194	+		GFF2097	0.34	-0.7
2,133,194	+		GFF2097	0.34	-0.9
2,133,194	+		GFF2097	0.34	-1.5
2,133,202	-		GFF2097	0.34	+0.3
2,133,202	-		GFF2097	0.34	+1.0
2,133,202	-		GFF2097	0.34	-0.2
2,133,202	-		GFF2097	0.34	-0.3
2,133,202	-		GFF2097	0.34	-0.7
2,133,202	-		GFF2097	0.34	+0.7
2,133,202	-		GFF2097	0.34	+0.1
2,133,202	-		GFF2097	0.34	-1.6
2,133,202	-		GFF2097	0.34	-1.0
2,133,202	-		GFF2097	0.34	-2.2
2,133,202	-		GFF2097	0.34	+2.0
2,133,202	-		GFF2097	0.34	+0.2
2,133,202	-		GFF2097	0.34	+1.1
2,133,202	-		GFF2097	0.34	+0.8
2,133,227	+		GFF2097	0.37	+0.6
2,133,245	+		GFF2097	0.38	-0.6
2,133,245	+		GFF2097	0.38	-0.0
2,133,253	-		GFF2097	0.39	-0.6
2,133,269	+		GFF2097	0.41	+0.4
2,133,276	+		GFF2097	0.41	-1.0
2,133,314	+		GFF2097	0.45	-0.1
2,133,314	+		GFF2097	0.45	+0.5
2,133,317	-		GFF2097	0.45	-0.0
2,133,320	-		GFF2097	0.46	-0.4
2,133,327	+		GFF2097	0.46	+0.2
2,133,338	+		GFF2097	0.47	-0.2
2,133,364	-		GFF2097	0.50	-0.0
2,133,364	-		GFF2097	0.50	-0.1
2,133,365	+		GFF2097	0.50	-1.2
2,133,366	+		GFF2097	0.50	-0.4
2,133,367	+		GFF2097	0.50	+0.2
2,133,367	+		GFF2097	0.50	+0.8
2,133,378	-		GFF2097	0.51	+0.2
2,133,419	-		GFF2097	0.55	-1.7
2,133,468	+		GFF2097	0.60	+0.4
2,133,478	+		GFF2097	0.61	+1.1
2,133,478	+		GFF2097	0.61	-0.5
2,133,481	-		GFF2097	0.61	+0.9
2,133,485	+		GFF2097	0.61	-0.3
2,133,485	+		GFF2097	0.61	-1.5
2,133,486	-		GFF2097	0.61	+1.1
2,133,486	-		GFF2097	0.61	+0.5
2,133,492	-		GFF2097	0.62	+0.1
2,133,501	+		GFF2097	0.63	-1.3
2,133,506	+		GFF2097	0.63	-0.1
2,133,514	-		GFF2097	0.64	-1.4
2,133,545	+		GFF2097	0.67	-0.1
2,133,557	-		GFF2097	0.68	+1.3
2,133,557	-		GFF2097	0.68	+1.0
2,133,574	+		GFF2097	0.70	-0.1
2,133,574	+		GFF2097	0.70	+0.5
2,133,574	+		GFF2097	0.70	-0.0
2,133,574	+		GFF2097	0.70	+0.5
2,133,580	-		GFF2097	0.70	-1.6
2,133,582	-		GFF2097	0.71	+0.4
2,133,582	-		GFF2097	0.71	+0.5
2,133,584	+		GFF2097	0.71	-1.5
2,133,589	+		GFF2097	0.71	-0.5
2,133,589	+		GFF2097	0.71	-0.0
2,133,597	+		GFF2097	0.72	-1.5
2,133,597	-		GFF2097	0.72	+0.3
2,133,597	-		GFF2097	0.72	+0.2
2,133,597	-		GFF2097	0.72	+0.7
2,133,597	-		GFF2097	0.72	-0.2
2,133,597	-		GFF2097	0.72	-0.8
2,133,611	-		GFF2097	0.73	-1.3
2,133,617	+		GFF2097	0.74	+0.4
2,133,632	-		GFF2097	0.75	+0.2
2,133,646	+		GFF2097	0.77	+0.6
2,133,655	+		GFF2097	0.78	-0.6
2,133,702	+		GFF2097	0.82	+1.8
2,133,734	+		GFF2097	0.85	-0.7
2,133,736	+		GFF2097	0.85	+0.5
2,133,754	-		GFF2097	0.87	+0.1
2,133,785	+				-2.5
2,133,788	-				+0.4
2,133,808	-				-0.3
2,133,810	-				+1.2
2,133,825	+				-1.6
2,133,849	-				+0.6
2,133,864	+				-0.1
2,133,864	+				+1.6
2,133,866	-				+0.2
2,133,880	+				-1.4
2,133,912	-				+1.0
2,133,914	+				-0.1
2,133,922	-				-0.4
2,133,922	-				+0.8
2,133,979	+				+0.8
2,133,979	+				-1.8
2,134,042	+		GFF2098	0.11	+0.2
2,134,059	+		GFF2098	0.13	+0.7
2,134,077	+		GFF2098	0.15	-2.2
2,134,078	+		GFF2098	0.15	-0.3
2,134,078	+		GFF2098	0.15	-0.3
2,134,078	+		GFF2098	0.15	+0.4
2,134,078	+		GFF2098	0.15	+0.5
2,134,079	+		GFF2098	0.15	-0.4
2,134,087	-		GFF2098	0.16	+0.4
2,134,101	+		GFF2098	0.17	-2.1
2,134,127	+		GFF2098	0.20	-1.5
2,134,241	+		GFF2098	0.33	-1.6
2,134,249	-		GFF2098	0.34	-2.1
2,134,249	-		GFF2098	0.34	-1.0
2,134,281	+		GFF2098	0.38	-2.5
2,134,281	+		GFF2098	0.38	+0.2
2,134,289	-		GFF2098	0.39	+0.1
2,134,289	-		GFF2098	0.39	+0.1
2,134,289	-		GFF2098	0.39	+0.2
2,134,308	-		GFF2098	0.41	-1.5
2,134,334	+		GFF2098	0.44	+1.2
2,134,339	+		GFF2098	0.45	-0.3
2,134,347	-		GFF2098	0.46	-0.5
2,134,388	+		GFF2098	0.50	-0.1
2,134,403	-		GFF2098	0.52	-1.4
2,134,435	+		GFF2098	0.56	-2.3
2,134,452	+		GFF2098	0.58	-0.7
2,134,460	+		GFF2098	0.59	-0.1
2,134,473	+		GFF2098	0.60	-0.5
2,134,476	+		GFF2098	0.60	-0.8
2,134,476	-		GFF2098	0.60	+0.7
2,134,486	+		GFF2098	0.62	-0.6
2,134,489	-		GFF2098	0.62	-1.3
2,134,494	-		GFF2098	0.63	-0.3
2,134,497	+		GFF2098	0.63	+0.1
2,134,497	+		GFF2098	0.63	+1.2
2,134,497	+		GFF2098	0.63	+1.5
2,134,497	+		GFF2098	0.63	+1.2
2,134,505	-		GFF2098	0.64	-1.7
2,134,507	+		GFF2098	0.64	+0.7
2,134,543	+		GFF2098	0.68	-0.3
2,134,544	-		GFF2098	0.68	-0.6
2,134,552	+		GFF2098	0.69	-0.6
2,134,586	+		GFF2098	0.73	-0.9
2,134,651	+		GFF2098	0.81	+0.6
2,134,657	+		GFF2098	0.81	-0.7
2,134,659	-		GFF2098	0.81	-1.6
2,134,659	-		GFF2098	0.81	+0.2
2,134,686	-		GFF2098	0.85	-0.1
2,134,718	+		GFF2098	0.88	+1.3
2,134,726	-		GFF2098	0.89	+0.7
2,134,733	-				-1.7
2,134,746	-				-0.6
2,134,751	+				-0.3
2,134,759	-				+0.4
2,134,786	+				-2.3
2,134,786	+				+0.5
2,134,788	+				-0.3
2,134,794	-				+0.5
2,134,796	-				+0.4
2,134,839	-				-1.8
2,134,855	+				+1.0
2,134,883	-				-1.9