Strain Fitness in Sphingobium sp. HT1-2 around GFF2062

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,099,192	+		GFF2061	0.43	+0.9
2,099,192	+		GFF2061	0.43	+0.1
2,099,192	+		GFF2061	0.43	+1.0
2,099,192	+		GFF2061	0.43	-0.4
2,099,192	+		GFF2061	0.43	+0.4
2,099,192	+		GFF2061	0.43	-1.5
2,099,192	+		GFF2061	0.43	-1.9
2,099,200	-		GFF2061	0.43	-1.1
2,099,200	-		GFF2061	0.43	+0.8
2,099,224	+		GFF2061	0.45	+0.4
2,099,239	-		GFF2061	0.46	-0.8
2,099,257	-		GFF2061	0.47	-1.8
2,099,257	-		GFF2061	0.47	-0.5
2,099,259	+		GFF2061	0.47	-1.5
2,099,311	+		GFF2061	0.51	+0.7
2,099,312	+		GFF2061	0.51	-0.5
2,099,333	+		GFF2061	0.53	-0.0
2,099,349	-		GFF2061	0.54	-1.1
2,099,372	+		GFF2061	0.56	-0.4
2,099,403	+		GFF2061	0.58	+0.4
2,099,432	+		GFF2061	0.60	-0.1
2,099,432	+		GFF2061	0.60	-0.6
2,099,432	+		GFF2061	0.60	-0.0
2,099,433	+		GFF2061	0.60	-0.3
2,099,440	-		GFF2061	0.61	-0.3
2,099,440	-		GFF2061	0.61	+0.6
2,099,440	-		GFF2061	0.61	+0.2
2,099,440	-		GFF2061	0.61	-0.1
2,099,440	-		GFF2061	0.61	-0.8
2,099,440	-		GFF2061	0.61	+0.8
2,099,440	-		GFF2061	0.61	-0.8
2,099,440	-		GFF2061	0.61	-2.0
2,099,440	-		GFF2061	0.61	+0.4
2,099,440	-		GFF2061	0.61	-0.8
2,099,440	-		GFF2061	0.61	-2.0
2,099,441	-		GFF2061	0.61	-0.3
2,099,459	+		GFF2061	0.62	+0.2
2,099,462	-		GFF2061	0.62	-2.1
2,099,468	+		GFF2061	0.63	+0.9
2,099,476	-		GFF2061	0.63	+0.9
2,099,494	+		GFF2061	0.64	-0.4
2,099,494	+		GFF2061	0.64	+0.2
2,099,499	+		GFF2061	0.65	-0.4
2,099,502	-		GFF2061	0.65	-1.1
2,099,507	+		GFF2061	0.65	+0.1
2,099,514	+		GFF2061	0.66	+0.5
2,099,519	+		GFF2061	0.66	-1.4
2,099,519	+		GFF2061	0.66	+0.5
2,099,519	+		GFF2061	0.66	-0.7
2,099,525	-		GFF2061	0.67	+1.4
2,099,525	-		GFF2061	0.67	-0.5
2,099,527	-		GFF2061	0.67	-2.3
2,099,527	-		GFF2061	0.67	-0.3
2,099,527	-		GFF2061	0.67	+1.9
2,099,527	-		GFF2061	0.67	+0.7
2,099,527	-		GFF2061	0.67	-0.6
2,099,527	-		GFF2061	0.67	-0.3
2,099,531	+		GFF2061	0.67	-0.9
2,099,531	+		GFF2061	0.67	+0.1
2,099,531	+		GFF2061	0.67	-1.1
2,099,531	+		GFF2061	0.67	-0.7
2,099,539	-		GFF2061	0.68	+0.1
2,099,539	-		GFF2061	0.68	+0.7
2,099,539	-		GFF2061	0.68	+0.3
2,099,556	-		GFF2061	0.69	-0.5
2,099,583	+		GFF2061	0.71	-1.7
2,099,583	+		GFF2061	0.71	-0.4
2,099,583	+		GFF2061	0.71	-1.9
2,099,583	+		GFF2061	0.71	-0.9
2,099,591	-		GFF2061	0.71	-0.9
2,099,591	-		GFF2061	0.71	-1.0
2,099,591	-		GFF2061	0.71	-0.3
2,099,591	-		GFF2061	0.71	-2.0
2,099,640	-		GFF2061	0.75	-1.3
2,099,697	+		GFF2061	0.79	-0.8
2,099,697	+		GFF2061	0.79	+0.7
2,099,703	+		GFF2061	0.80	+0.3
2,099,703	+		GFF2061	0.80	-2.1
2,099,711	-		GFF2061	0.80	-0.3
2,099,711	-		GFF2061	0.80	+0.7
2,099,793	+		GFF2061	0.86	-0.3
2,099,805	+		GFF2061	0.87	+0.7
2,099,813	-		GFF2061	0.87	+2.0
2,099,822	+		GFF2061	0.88	-1.7
2,099,824	+		GFF2061	0.88	-0.7
2,099,825	+		GFF2061	0.88	+0.8
2,099,830	+		GFF2061	0.89	+0.9
2,099,830	+		GFF2061	0.89	-1.1
2,099,835	+		GFF2061	0.89	-0.4
2,099,851	-				-0.7
2,099,862	+				-0.5
2,099,924	+				+1.2
2,099,924	+				-0.4
2,099,932	-				+1.5
2,099,937	+				+0.5
2,099,943	-				-0.9
2,099,950	-				+0.6
2,099,950	-				+0.3
2,099,972	-				+1.4
2,099,986	+				-2.1
2,099,987	+				-0.5
2,100,003	-				+0.1
2,100,015	-				-0.1
2,100,019	+				-1.3
2,100,084	-				-0.8
2,100,089	-				+0.4
2,100,090	+				+0.4
2,100,090	+				+0.8
2,100,090	+				-0.7
2,100,090	+				-1.1
2,100,090	+				+0.4
2,100,098	-				+0.9
2,100,099	-				-0.0
2,100,141	+				-0.3
2,100,151	-				-0.5
2,100,199	+				-0.2
2,100,213	+				-1.4
2,100,216	-				-2.5
2,100,226	-				-1.9
2,100,228	+				-2.9
2,100,228	+				-0.8
2,100,228	+				+0.2
2,100,228	+				-0.2
2,100,236	-				-2.7
2,100,243	-				-0.5
2,100,245	+				-2.0
2,100,253	-				+1.0
2,100,263	+				+0.6
2,100,268	+				+1.3
2,100,276	-				-1.4
2,100,281	-				-1.1
2,100,281	-				-0.4
2,100,298	-				-0.2
2,100,307	+				-1.3
2,100,308	+				-0.4
2,100,308	+				+1.2
2,100,324	-		GFF2062	0.11	+0.7
2,100,341	+		GFF2062	0.12	-1.8
2,100,410	+		GFF2062	0.18	+1.2
2,100,410	+		GFF2062	0.18	+0.2
2,100,418	-		GFF2062	0.18	+0.9
2,100,433	+		GFF2062	0.19	+0.3
2,100,438	+		GFF2062	0.20	-0.1
2,100,440	-		GFF2062	0.20	+0.9
2,100,443	+		GFF2062	0.20	-0.4
2,100,443	+		GFF2062	0.20	-0.6
2,100,446	-		GFF2062	0.20	+0.7
2,100,448	+		GFF2062	0.21	+0.1
2,100,451	-		GFF2062	0.21	-1.4
2,100,451	-		GFF2062	0.21	-0.7
2,100,478	+		GFF2062	0.23	+0.3
2,100,486	-		GFF2062	0.24	+0.7
2,100,486	-		GFF2062	0.24	-0.7
2,100,486	-		GFF2062	0.24	+0.4
2,100,486	-		GFF2062	0.24	+0.4
2,100,519	+		GFF2062	0.26	-2.7
2,100,519	+		GFF2062	0.26	+0.7
2,100,519	+		GFF2062	0.26	-0.0
2,100,519	+		GFF2062	0.26	-0.7
2,100,519	+		GFF2062	0.26	-0.1
2,100,519	+		GFF2062	0.26	+0.9
2,100,519	+		GFF2062	0.26	-2.1
2,100,519	+		GFF2062	0.26	+1.9
2,100,519	+		GFF2062	0.26	-0.4
2,100,519	+		GFF2062	0.26	+1.3
2,100,524	+		GFF2062	0.26	-1.9
2,100,527	-		GFF2062	0.27	+0.3
2,100,527	-		GFF2062	0.27	+0.4
2,100,527	-		GFF2062	0.27	-0.6
2,100,527	-		GFF2062	0.27	+0.7
2,100,527	-		GFF2062	0.27	-0.3
2,100,527	-		GFF2062	0.27	-1.0
2,100,527	-		GFF2062	0.27	-1.1
2,100,529	+		GFF2062	0.27	-1.0
2,100,532	-		GFF2062	0.27	+0.3
2,100,588	+		GFF2062	0.31	-0.0
2,100,588	+		GFF2062	0.31	+0.2
2,100,588	+		GFF2062	0.31	+0.2
2,100,588	+		GFF2062	0.31	+0.1
2,100,589	+		GFF2062	0.31	-1.3
2,100,596	-		GFF2062	0.32	+1.4
2,100,596	-		GFF2062	0.32	-0.3
2,100,596	-		GFF2062	0.32	-0.8
2,100,596	-		GFF2062	0.32	-0.1
2,100,607	+		GFF2062	0.33	-0.1
2,100,614	-		GFF2062	0.33	+0.2
2,100,615	-		GFF2062	0.33	-2.4
2,100,615	-		GFF2062	0.33	+0.2
2,100,709	+		GFF2062	0.41	+0.2
2,100,734	+		GFF2062	0.43	-0.2
2,100,735	+		GFF2062	0.43	-0.7
2,100,786	+		GFF2062	0.47	+0.6
2,100,786	+		GFF2062	0.47	+0.2
2,100,786	+		GFF2062	0.47	+1.1
2,100,786	+		GFF2062	0.47	-2.3
2,100,786	+		GFF2062	0.47	+1.3
2,100,786	+		GFF2062	0.47	-1.2
2,100,786	+		GFF2062	0.47	+1.3
2,100,786	+		GFF2062	0.47	-0.4
2,100,786	+		GFF2062	0.47	-1.7
2,100,786	+		GFF2062	0.47	-0.9
2,100,786	+		GFF2062	0.47	-0.3
2,100,791	+		GFF2062	0.47	-1.4
2,100,794	-		GFF2062	0.47	-1.8
2,100,794	-		GFF2062	0.47	-1.9
2,100,794	-		GFF2062	0.47	-1.0
2,100,794	-		GFF2062	0.47	+1.4
2,100,794	-		GFF2062	0.47	-1.8
2,100,794	-		GFF2062	0.47	-1.9
2,100,794	-		GFF2062	0.47	-1.4
2,100,794	-		GFF2062	0.47	-0.9
2,100,794	-		GFF2062	0.47	-0.6
2,100,794	-		GFF2062	0.47	-0.1
2,100,794	-		GFF2062	0.47	-0.1
2,100,794	-		GFF2062	0.47	-0.7
2,100,794	-		GFF2062	0.47	+0.0
2,100,796	+		GFF2062	0.47	-1.0
2,100,799	-		GFF2062	0.48	-1.3
2,100,799	-		GFF2062	0.48	-0.3
2,100,805	-		GFF2062	0.48	-0.9
2,100,828	-		GFF2062	0.50	-0.3
2,100,833	+		GFF2062	0.50	+1.7
2,100,841	-		GFF2062	0.51	-1.7
2,100,853	+		GFF2062	0.52	-0.5
2,100,878	+		GFF2062	0.54	-0.7
2,100,878	+		GFF2062	0.54	-0.9
2,100,886	-		GFF2062	0.54	+0.6
2,100,886	-		GFF2062	0.54	-1.0
2,100,886	-		GFF2062	0.54	-0.1
2,100,886	-		GFF2062	0.54	+1.0
2,100,886	-		GFF2062	0.54	-0.9
2,100,892	+		GFF2062	0.55	+0.8
2,100,894	-		GFF2062	0.55	-0.1
2,100,904	+		GFF2062	0.56	+0.9
2,100,904	+		GFF2062	0.56	-0.3
2,100,909	+		GFF2062	0.56	+1.0
2,100,916	+		GFF2062	0.57	-1.5
2,100,916	+		GFF2062	0.57	-0.4
2,100,919	-		GFF2062	0.57	-0.1
2,100,924	-		GFF2062	0.57	+0.4
2,100,924	-		GFF2062	0.57	-2.6
2,100,924	-		GFF2062	0.57	-1.3
2,100,963	-		GFF2062	0.60	-1.1
2,100,970	-		GFF2062	0.61	+0.5
2,100,989	+		GFF2062	0.62	-1.2
2,100,989	+		GFF2062	0.62	+0.0
2,100,997	-		GFF2062	0.63	-0.0
2,101,012	+		GFF2062	0.64	-0.0
2,101,027	+		GFF2062	0.65	-0.5
2,101,027	+		GFF2062	0.65	-1.5
2,101,027	+		GFF2062	0.65	-1.8
2,101,035	-		GFF2062	0.66	-0.2
2,101,051	-		GFF2062	0.67	-1.1
2,101,085	+		GFF2062	0.70	-0.9
2,101,085	+		GFF2062	0.70	+0.9
2,101,086	+		GFF2062	0.70	-0.9
2,101,087	+		GFF2062	0.70	-0.3
2,101,093	-		GFF2062	0.70	+0.1
2,101,093	-		GFF2062	0.70	-1.7
2,101,099	+		GFF2062	0.71	+0.8
2,101,145	+		GFF2062	0.74	+0.7
2,101,148	-		GFF2062	0.74	+1.2
2,101,184	+		GFF2062	0.77	+0.4
2,101,187	-		GFF2062	0.77	-0.8
2,101,187	-		GFF2062	0.77	-0.9
2,101,189	-		GFF2062	0.77	-1.0
2,101,202	-		GFF2062	0.78	-1.5
2,101,202	-		GFF2062	0.78	+0.4
2,101,205	+		GFF2062	0.79	-2.0
2,101,260	+		GFF2062	0.83	+0.9
2,101,286	+		GFF2062	0.85	-0.9
2,101,288	+		GFF2062	0.85	-0.1
2,101,288	+		GFF2062	0.85	+1.0
2,101,288	+		GFF2062	0.85	+0.2
2,101,288	+		GFF2062	0.85	-0.0
2,101,288	+		GFF2062	0.85	-0.4
2,101,288	+		GFF2062	0.85	-0.1
2,101,288	+		GFF2062	0.85	-1.2
2,101,289	-		GFF2062	0.85	-0.5
2,101,296	+		GFF2062	0.86	-0.0
2,101,296	-		GFF2062	0.86	+0.2
2,101,296	-		GFF2062	0.86	+0.5
2,101,334	+		GFF2062	0.89	+0.8
2,101,382	-				-1.2
2,101,382	-				-0.1
2,101,389	+				-0.3
2,101,389	+				+0.6
2,101,413	-				+0.3
2,101,432	+				+1.1
2,101,440	-				-1.4
2,101,489	-				+0.6
2,101,544	-				+0.1
2,101,552	-				+0.2
2,101,554	-				+0.3
2,101,563	+				-0.7
2,101,571	+				-0.4
2,101,571	+				+1.0
2,101,571	+				+0.6
2,101,571	+				-1.7
2,101,571	+				+0.5
2,101,571	+				-0.5
2,101,579	-				-0.6
2,101,579	-				+0.8
2,101,596	-		GFF2063	0.10	-1.6
2,101,624	-		GFF2063	0.14	+1.3
2,101,629	+		GFF2063	0.14	-1.1
2,101,629	-		GFF2063	0.14	+1.1
2,101,657	-		GFF2063	0.18	+0.9
2,101,657	-		GFF2063	0.18	+0.1
2,101,657	-		GFF2063	0.18	+0.1
2,101,661	-		GFF2063	0.19	+0.5
2,101,670	+		GFF2063	0.20	-0.2
2,101,670	+		GFF2063	0.20	+0.2
2,101,671	+		GFF2063	0.20	+1.3
2,101,678	-		GFF2063	0.21	-1.1
2,101,678	-		GFF2063	0.21	-0.1
2,101,679	-		GFF2063	0.21	-0.5
2,101,679	-		GFF2063	0.21	+0.3
2,101,700	-		GFF2063	0.24	+0.1
2,101,718	+		GFF2063	0.26	+0.9
2,101,718	+		GFF2063	0.26	+0.8
2,101,718	+		GFF2063	0.26	+0.6
2,101,718	+		GFF2063	0.26	+0.3
2,101,726	-		GFF2063	0.27	-1.0
2,101,738	+		GFF2063	0.29	-0.4
2,101,738	+		GFF2063	0.29	-0.0
2,101,740	+		GFF2063	0.29	+0.5
2,101,746	-		GFF2063	0.30	+2.0
2,101,746	-		GFF2063	0.30	-0.1
2,101,763	+		GFF2063	0.32	+1.4
2,101,763	+		GFF2063	0.32	+0.8
2,101,765	+		GFF2063	0.32	-0.7
2,101,771	-		GFF2063	0.33	+0.1
2,101,771	-		GFF2063	0.33	+0.9
2,101,771	-		GFF2063	0.33	+0.1
2,101,772	+		GFF2063	0.33	-2.0
2,101,773	-		GFF2063	0.33	-0.8
2,101,773	-		GFF2063	0.33	-0.9
2,101,773	-		GFF2063	0.33	-1.1
2,101,798	+		GFF2063	0.36	-0.2
2,101,806	-		GFF2063	0.38	-1.4
2,101,806	-		GFF2063	0.38	-0.1
2,101,806	-		GFF2063	0.38	+0.7
2,101,820	+		GFF2063	0.39	-1.8
2,101,820	+		GFF2063	0.39	-2.2
2,101,820	+		GFF2063	0.39	-0.4
2,101,820	+		GFF2063	0.39	-1.5
2,101,820	+		GFF2063	0.39	-0.3
2,101,820	+		GFF2063	0.39	-0.3
2,101,820	+		GFF2063	0.39	-1.7
2,101,820	+		GFF2063	0.39	+0.4
2,101,820	+		GFF2063	0.39	-1.9
2,101,820	+		GFF2063	0.39	+0.9
2,101,820	+		GFF2063	0.39	+0.7
2,101,820	+		GFF2063	0.39	-0.5
2,101,821	+		GFF2063	0.39	+0.3
2,101,828	-		GFF2063	0.40	+0.3
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