Strain Fitness in Sphingobium sp. HT1-2 around GFF2050

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,086,632	+		GFF2048	0.69	-1.0
2,086,632	+		GFF2048	0.69	+0.3
2,086,635	-		GFF2048	0.70	+1.1
2,086,640	-		GFF2048	0.71	+1.5
2,086,667	+		GFF2048	0.77	+0.3
2,086,707	+		GFF2048	0.87	-0.6
2,086,717	+		GFF2048	0.90	+0.6
2,086,735	-				-0.1
2,086,735	-				+0.5
2,086,768	+				+1.0
2,086,804	-				+0.9
2,086,804	-				+0.1
2,086,828	+				+1.3
2,086,828	+				+1.1
2,086,830	+				+0.6
2,086,836	-				-0.4
2,086,836	-				+0.2
2,086,836	-				+0.4
2,086,843	-				-1.9
2,086,870	+				+0.0
2,086,870	+				+0.1
2,086,878	-				+0.6
2,086,883	-				+1.9
2,086,883	-				-0.5
2,086,883	-				+0.5
2,086,898	+				-0.1
2,086,900	-				-0.6
2,086,905	-		GFF2049	0.10	+0.5
2,086,906	-		GFF2049	0.10	-0.2
2,086,913	-		GFF2049	0.11	-0.9
2,086,919	-		GFF2049	0.12	+1.3
2,086,959	+		GFF2049	0.17	+0.1
2,086,967	-		GFF2049	0.18	+0.7
2,086,967	-		GFF2049	0.18	-0.9
2,086,978	+		GFF2049	0.20	+0.7
2,087,085	+		GFF2049	0.34	+1.3
2,087,183	-		GFF2049	0.47	-3.4
2,087,189	-		GFF2049	0.47	+0.1
2,087,211	-		GFF2049	0.50	+1.4
2,087,218	+		GFF2049	0.51	-1.0
2,087,218	+		GFF2049	0.51	-0.5
2,087,218	+		GFF2049	0.51	-1.0
2,087,218	+		GFF2049	0.51	+0.9
2,087,218	+		GFF2049	0.51	-1.9
2,087,226	-		GFF2049	0.52	-1.4
2,087,265	+		GFF2049	0.57	+0.6
2,087,272	-		GFF2049	0.58	+1.0
2,087,287	+		GFF2049	0.60	-0.7
2,087,303	-		GFF2049	0.62	-0.1
2,087,324	-		GFF2049	0.65	+0.4
2,087,335	+		GFF2049	0.67	+0.2
2,087,335	+		GFF2049	0.67	+0.5
2,087,335	+		GFF2049	0.67	-0.3
2,087,343	-		GFF2049	0.68	-0.7
2,087,346	+		GFF2049	0.68	+0.4
2,087,346	+		GFF2049	0.68	+1.1
2,087,346	+		GFF2049	0.68	-0.2
2,087,356	+		GFF2049	0.69	+0.0
2,087,382	+		GFF2049	0.73	+1.2
2,087,385	-		GFF2049	0.73	+0.0
2,087,390	-		GFF2049	0.74	+0.7
2,087,390	-		GFF2049	0.74	+0.3
2,087,446	+		GFF2049	0.81	-0.6
2,087,446	+		GFF2049	0.81	+2.5
2,087,446	+		GFF2049	0.81	-0.1
2,087,452	-		GFF2049	0.82	+1.8
2,087,454	-		GFF2049	0.82	+1.2
2,087,454	-		GFF2049	0.82	+0.8
2,087,454	-		GFF2049	0.82	+1.2
2,087,454	-		GFF2049	0.82	-1.5
2,087,454	-		GFF2049	0.82	+0.3
2,087,454	-		GFF2049	0.82	-0.4
2,087,454	-		GFF2049	0.82	-0.0
2,087,454	-		GFF2049	0.82	-0.3
2,087,454	-		GFF2049	0.82	+0.7
2,087,464	-		GFF2049	0.83	+0.1
2,087,468	-		GFF2049	0.84	+0.6
2,087,513	+		GFF2049	0.90	+0.5
2,087,520	+				-2.4
2,087,533	+				-0.9
2,087,541	-				-0.0
2,087,547	-				-1.5
2,087,615	-				+1.2
2,087,637	+				-0.5
2,087,637	+				+0.3
2,087,650	-				-0.6
2,087,670	+				-0.9
2,087,679	-				-1.7
2,087,700	+				-1.4
2,087,708	-				-1.2
2,087,713	-				+1.0
2,087,720	+				-2.3
2,087,730	-				-0.1
2,087,778	-		GFF2050	0.11	+0.5
2,087,845	+		GFF2050	0.16	+1.0
2,087,850	+		GFF2050	0.16	-0.9
2,087,850	+		GFF2050	0.16	+0.5
2,087,855	+		GFF2050	0.16	-0.2
2,087,863	+		GFF2050	0.17	+0.2
2,087,878	-		GFF2050	0.18	+0.3
2,087,878	-		GFF2050	0.18	+0.6
2,087,883	-		GFF2050	0.18	-0.4
2,087,896	-		GFF2050	0.19	-2.5
2,087,953	+		GFF2050	0.23	-0.2
2,087,979	+		GFF2050	0.25	+0.8
2,087,997	-		GFF2050	0.26	+1.2
2,087,997	-		GFF2050	0.26	-1.9
2,087,997	-		GFF2050	0.26	+1.2
2,087,997	-		GFF2050	0.26	-1.3
2,088,042	+		GFF2050	0.29	+0.5
2,088,049	+		GFF2050	0.29	-1.6
2,088,057	-		GFF2050	0.30	+0.3
2,088,057	-		GFF2050	0.30	+0.1
2,088,059	+		GFF2050	0.30	+1.9
2,088,094	+		GFF2050	0.32	-0.7
2,088,125	-		GFF2050	0.35	-0.5
2,088,132	-		GFF2050	0.35	+0.2
2,088,169	+		GFF2050	0.37	+2.3
2,088,174	+		GFF2050	0.38	-0.4
2,088,190	+		GFF2050	0.39	-0.5
2,088,253	+		GFF2050	0.43	-1.1
2,088,265	+		GFF2050	0.44	-0.1
2,088,265	+		GFF2050	0.44	-0.0
2,088,265	+		GFF2050	0.44	-0.2
2,088,273	-		GFF2050	0.44	+0.9
2,088,273	-		GFF2050	0.44	-0.2
2,088,273	-		GFF2050	0.44	-0.7
2,088,273	-		GFF2050	0.44	-0.5
2,088,297	+		GFF2050	0.46	+0.3
2,088,297	+		GFF2050	0.46	-2.0
2,088,344	-		GFF2050	0.49	-1.0
2,088,396	+		GFF2050	0.53	-0.1
2,088,396	+		GFF2050	0.53	-1.0
2,088,396	+		GFF2050	0.53	+0.7
2,088,396	+		GFF2050	0.53	-1.0
2,088,396	+		GFF2050	0.53	-1.2
2,088,404	-		GFF2050	0.53	+0.1
2,088,404	-		GFF2050	0.53	-0.7
2,088,404	-		GFF2050	0.53	+0.2
2,088,404	-		GFF2050	0.53	+0.4
2,088,413	-		GFF2050	0.54	-0.3
2,088,414	-		GFF2050	0.54	-2.4
2,088,444	+		GFF2050	0.56	-1.2
2,088,444	+		GFF2050	0.56	+0.1
2,088,454	+		GFF2050	0.57	+2.4
2,088,462	-		GFF2050	0.57	-0.2
2,088,508	+		GFF2050	0.60	+0.9
2,088,516	-		GFF2050	0.61	-0.1
2,088,583	+		GFF2050	0.65	-1.9
2,088,591	-		GFF2050	0.66	+0.6
2,088,591	-		GFF2050	0.66	+0.1
2,088,591	-		GFF2050	0.66	+0.7
2,088,700	+		GFF2050	0.73	+0.3
2,088,731	-		GFF2050	0.75	+0.1
2,088,765	+		GFF2050	0.77	+0.3
2,088,773	-		GFF2050	0.78	+0.1
2,088,788	-		GFF2050	0.79	+0.1
2,088,798	+		GFF2050	0.80	-1.5
2,088,799	-		GFF2050	0.80	-0.0
2,088,806	-		GFF2050	0.80	+0.1
2,088,826	+		GFF2050	0.81	-0.1
2,088,848	+		GFF2050	0.83	-0.8
2,088,854	-		GFF2050	0.83	-0.6
2,088,883	+		GFF2050	0.85	-0.1
2,088,883	+		GFF2050	0.85	-1.0
2,088,891	-		GFF2050	0.86	-0.2
2,088,891	-		GFF2050	0.86	-0.3
2,088,891	-		GFF2050	0.86	-1.1
2,088,896	-		GFF2050	0.86	+1.2
2,088,910	-		GFF2050	0.87	-0.1
2,088,933	+		GFF2050	0.89	+0.7
2,088,950	+		GFF2050	0.90	+0.2
2,088,958	-				-1.4
2,088,966	-				-1.0
2,088,981	+				-0.6
2,089,231	+		GFF2051	0.23	-0.3
2,089,233	-		GFF2051	0.24	-0.8
2,089,239	-		GFF2051	0.26	-0.2
2,089,240	-		GFF2051	0.27	+0.4
2,089,249	-		GFF2051	0.30	+1.0
2,089,249	-		GFF2051	0.30	-0.9
2,089,249	-		GFF2051	0.30	+1.3
2,089,270	+		GFF2051	0.38	-1.9
2,089,351	-		GFF2051	0.70	-0.2
2,089,392	+		GFF2051	0.86	+0.6
2,089,407	+				-0.2
2,089,432	+				+1.5
2,089,445	+				-0.4
2,089,445	+				+0.5
2,089,477	+				+0.8
2,089,504	+				+0.2
2,089,512	-				-0.7
2,089,524	+				-1.0
2,089,524	+				-0.4
2,089,524	+				-0.0
2,089,532	-				-1.4
2,089,579	+				-1.4
2,089,581	+				+1.1
2,089,587	-				-0.2
2,089,626	+				-1.2
2,089,639	-				-0.1
2,089,690	-		GFF2052	0.11	+0.0
2,089,691	-		GFF2052	0.12	+0.1
2,089,722	-		GFF2052	0.15	-1.6
2,089,759	+		GFF2052	0.19	-0.4
2,089,784	-		GFF2052	0.22	-0.4
2,089,810	-		GFF2052	0.25	-1.5
2,089,817	+		GFF2052	0.26	-1.6
2,089,820	-		GFF2052	0.26	-1.1
2,089,853	+		GFF2052	0.30	-0.9
2,089,859	-		GFF2052	0.31	+0.1
2,089,859	-		GFF2052	0.31	+0.5
2,090,067	+		GFF2052	0.54	-2.1
2,090,075	-		GFF2052	0.55	-0.5
2,090,075	-		GFF2052	0.55	+1.6
2,090,085	+		GFF2052	0.56	+0.7
2,090,087	+		GFF2052	0.57	+0.6