Strain Fitness in Sphingobium sp. HT1-2 around GFF1923

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,947,088	-		GFF1921	0.65	-0.5
1,947,127	+		GFF1921	0.68	-1.3
1,947,135	-		GFF1921	0.69	-1.8
1,947,135	-		GFF1921	0.69	-0.7
1,947,135	-		GFF1921	0.69	+1.1
1,947,135	-		GFF1921	0.69	-0.2
1,947,147	+		GFF1921	0.70	-0.3
1,947,163	-		GFF1921	0.71	-1.4
1,947,180	+		GFF1921	0.72	-0.5
1,947,180	-		GFF1921	0.72	-0.7
1,947,184	+		GFF1921	0.73	-0.3
1,947,201	-		GFF1921	0.74	-2.1
1,947,233	-		GFF1921	0.76	-1.9
1,947,266	-		GFF1921	0.79	-0.7
1,947,275	-		GFF1921	0.79	+0.6
1,947,348	+		GFF1921	0.85	-0.3
1,947,376	+		GFF1921	0.87	-1.1
1,947,384	-		GFF1921	0.87	-2.5
1,947,422	+				-2.9
1,947,449	-				-2.8
1,947,471	+				-1.4
1,947,479	-				+0.2
1,947,479	-				-0.6
1,947,539	+				+0.8
1,947,541	+				-1.3
1,947,549	-				+1.0
1,947,549	-				-0.7
1,947,549	-				-1.0
1,947,549	-				-2.4
1,947,549	-				-0.1
1,947,549	-				-0.9
1,947,549	-				-0.6
1,947,590	-				+0.6
1,947,607	+				+1.2
1,947,615	-				+0.0
1,947,657	-				+1.4
1,947,657	-				-0.7
1,947,657	-				+0.6
1,947,657	-				-0.8
1,947,657	-				+0.2
1,947,657	-				+1.5
1,947,657	-				-1.6
1,947,750	+		GFF1922	0.17	-1.1
1,947,785	+		GFF1922	0.26	-1.1
1,947,797	+		GFF1922	0.29	+0.3
1,947,799	+		GFF1922	0.30	-0.1
1,947,799	+		GFF1922	0.30	+0.1
1,947,805	-		GFF1922	0.31	-0.4
1,947,815	-		GFF1922	0.34	-2.1
1,947,861	+		GFF1922	0.47	-1.0
1,947,871	-		GFF1922	0.49	-0.2
1,947,881	+		GFF1922	0.52	-0.7
1,947,945	+		GFF1922	0.69	+0.3
1,947,968	+		GFF1922	0.75	-2.2
1,947,983	-		GFF1922	0.79	-1.5
1,948,001	-		GFF1922	0.84	-1.7
1,948,009	-		GFF1922	0.86	-0.7
1,948,029	+				-1.0
1,948,059	+				+1.5
1,948,059	+				-0.6
1,948,059	+				-0.2
1,948,059	+				+0.1
1,948,062	-				+1.2
1,948,067	-				+0.9
1,948,067	-				-0.0
1,948,117	+				-0.6
1,948,160	+				-1.5
1,948,167	+				+0.9
1,948,185	-				+0.1
1,948,187	-				-0.8
1,948,189	+				-1.7
1,948,189	+				-2.0
1,948,189	+				-1.4
1,948,197	-				-0.3
1,948,197	-				-2.5
1,948,197	-				-1.1
1,948,197	-				+0.4
1,948,199	+				+1.5
1,948,211	-		GFF1923	0.11	-1.1
1,948,255	-		GFF1923	0.15	-1.9
1,948,256	-		GFF1923	0.15	-0.3
1,948,274	-		GFF1923	0.16	+1.0
1,948,290	-		GFF1923	0.18	-0.6
1,948,431	+		GFF1923	0.30	-1.8
1,948,431	+		GFF1923	0.30	-1.2
1,948,431	+		GFF1923	0.30	-0.3
1,948,431	+		GFF1923	0.30	-1.4
1,948,431	+		GFF1923	0.30	-1.2
1,948,431	+		GFF1923	0.30	+0.6
1,948,431	+		GFF1923	0.30	-0.0
1,948,431	+		GFF1923	0.30	-1.6
1,948,431	+		GFF1923	0.30	-0.7
1,948,431	+		GFF1923	0.30	-2.1
1,948,434	-		GFF1923	0.30	-0.8
1,948,436	+		GFF1923	0.30	-0.9
1,948,436	+		GFF1923	0.30	-1.3
1,948,436	+		GFF1923	0.30	-0.5
1,948,439	-		GFF1923	0.30	-3.1
1,948,439	-		GFF1923	0.30	-0.4
1,948,439	-		GFF1923	0.30	-0.2
1,948,469	+		GFF1923	0.33	-2.1
1,948,470	-		GFF1923	0.33	-0.5
1,948,477	-		GFF1923	0.34	-0.9
1,948,477	-		GFF1923	0.34	+0.8
1,948,482	-		GFF1923	0.34	-1.0
1,948,520	+		GFF1923	0.37	-2.9
1,948,520	+		GFF1923	0.37	+0.1
1,948,520	+		GFF1923	0.37	-0.5
1,948,520	+		GFF1923	0.37	-1.2
1,948,520	+		GFF1923	0.37	+0.3
1,948,520	+		GFF1923	0.37	-0.7
1,948,528	-		GFF1923	0.38	-0.7
1,948,528	-		GFF1923	0.38	-0.8
1,948,534	+		GFF1923	0.38	-1.8
1,948,534	+		GFF1923	0.38	-0.6
1,948,534	+		GFF1923	0.38	-1.1
1,948,542	-		GFF1923	0.39	+0.8
1,948,542	-		GFF1923	0.39	-0.5
1,948,544	+		GFF1923	0.39	-1.7
1,948,548	-		GFF1923	0.40	-1.2
1,948,559	+		GFF1923	0.41	+0.3
1,948,620	+		GFF1923	0.46	-0.3
1,948,625	+		GFF1923	0.46	-1.2
1,948,628	-		GFF1923	0.47	-0.6
1,948,628	-		GFF1923	0.47	+1.2
1,948,662	+		GFF1923	0.49	+0.2
1,948,670	-		GFF1923	0.50	-2.4
1,948,670	-		GFF1923	0.50	-2.3
1,948,679	+		GFF1923	0.51	+0.4
1,948,687	-		GFF1923	0.52	+0.2
1,948,711	+		GFF1923	0.54	-1.2
1,948,733	+		GFF1923	0.56	-0.7
1,948,733	+		GFF1923	0.56	-2.0
1,948,741	-		GFF1923	0.56	-1.0
1,948,741	-		GFF1923	0.56	+1.9
1,948,741	-		GFF1923	0.56	-2.1
1,948,768	+		GFF1923	0.59	-0.1
1,948,768	+		GFF1923	0.59	+1.0
1,948,768	+		GFF1923	0.59	+1.0
1,948,768	+		GFF1923	0.59	-1.3
1,948,771	-		GFF1923	0.59	+0.1
1,948,776	-		GFF1923	0.59	-0.3
1,948,776	-		GFF1923	0.59	-0.5
1,948,850	-		GFF1923	0.66	-0.0
1,948,857	-		GFF1923	0.66	+0.0
1,948,897	+		GFF1923	0.70	-0.4
1,948,907	-		GFF1923	0.71	+0.2
1,948,932	-		GFF1923	0.73	+1.0
1,948,945	-		GFF1923	0.74	-0.8
1,948,968	-		GFF1923	0.76	-1.8
1,948,969	+		GFF1923	0.76	-0.3
1,948,977	-		GFF1923	0.77	+0.9
1,949,030	+		GFF1923	0.81	+0.1
1,949,038	-		GFF1923	0.82	-1.4
1,949,040	+		GFF1923	0.82	+0.4
1,949,072	+		GFF1923	0.85	-0.5
1,949,079	+		GFF1923	0.85	-1.2
1,949,080	-		GFF1923	0.85	-0.4
1,949,096	-		GFF1923	0.87	+1.2
1,949,121	-		GFF1923	0.89	-1.0
1,949,129	+		GFF1923	0.90	+0.6
1,949,137	-				+0.4
1,949,141	-				+0.7
1,949,155	-				+0.4
1,949,166	-				-1.0
1,949,205	-				+0.5
1,949,213	-				+1.3
1,949,213	-				-1.6
1,949,242	-				-2.2
1,949,284	+				+0.3
1,949,340	+				+0.7
1,949,341	-				+0.5
1,949,347	+				+0.5
1,949,355	-				+1.7
1,949,355	-				-0.6
1,949,355	-				+0.3
1,949,355	-				-1.3
1,949,374	+				+0.2
1,949,374	+				-0.2
1,949,433	+				+0.3
1,949,440	+				-0.7
1,949,448	-				-0.3
1,949,448	-				-0.5
1,949,448	-				+1.7
1,949,485	+				-0.7
1,949,485	+				-0.0
1,949,493	-				-0.1
1,949,493	-				+0.3
1,949,493	-				+0.5
1,949,509	-				+0.0
1,949,513	+				-0.7
1,949,519	-				-0.9
1,949,530	+				+0.5
1,949,535	+				+0.0
1,949,621	-				-0.9
1,949,662	-		GFF1924	0.13	-0.7
1,949,723	-		GFF1924	0.34	-1.7
1,949,741	+		GFF1924	0.40	-0.8
1,949,777	+		GFF1924	0.53	-0.2
1,949,779	+		GFF1924	0.54	+0.8
1,949,802	+		GFF1924	0.62	+0.0
1,949,802	+		GFF1924	0.62	-1.0
1,949,802	+		GFF1924	0.62	+0.1
1,949,808	+		GFF1924	0.64	-0.1
1,949,810	-		GFF1924	0.65	+1.9
1,949,810	-		GFF1924	0.65	-0.4
1,949,810	-		GFF1924	0.65	+0.5
1,949,810	-		GFF1924	0.65	+0.1
1,949,810	-		GFF1924	0.65	+1.2
1,949,810	-		GFF1924	0.65	+0.5
1,949,810	-		GFF1924	0.65	+0.1
1,949,822	+		GFF1924	0.69	-0.4
1,949,822	+		GFF1924	0.69	+0.3
1,949,822	+		GFF1924	0.69	-0.4
1,949,822	+		GFF1924	0.69	+0.8
1,949,822	+		GFF1924	0.69	-1.3
1,949,822	+		GFF1924	0.69	+0.9
1,949,822	+		GFF1924	0.69	-0.1
1,949,822	+		GFF1924	0.69	+0.9
1,949,822	+		GFF1924	0.69	-0.1
1,949,822	+		GFF1924	0.69	+0.7
1,949,822	+		GFF1924	0.69	-0.1
1,949,822	+		GFF1924	0.69	-1.0
1,949,825	-		GFF1924	0.70	+0.1
1,949,830	-		GFF1924	0.72	-0.3
1,949,830	-		GFF1924	0.72	+0.4
1,949,830	-		GFF1924	0.72	-0.6
1,949,830	-		GFF1924	0.72	+0.1
1,949,830	-		GFF1924	0.72	+0.6
1,949,830	-		GFF1924	0.72	+0.6
1,949,830	-		GFF1924	0.72	-0.7
1,949,830	-		GFF1924	0.72	+0.3
1,949,830	-		GFF1924	0.72	+0.3
1,949,830	-		GFF1924	0.72	+0.2
1,949,830	-		GFF1924	0.72	+1.9
1,949,830	-		GFF1924	0.72	+0.1
1,949,830	-		GFF1924	0.72	-0.7
1,949,830	-		GFF1924	0.72	-0.0
1,949,830	-		GFF1924	0.72	+1.1
1,949,830	-		GFF1924	0.72	+1.0
1,949,830	-		GFF1924	0.72	-0.1
1,949,830	-		GFF1924	0.72	+0.8
1,949,830	-		GFF1924	0.72	-0.6
1,949,830	-		GFF1924	0.72	+0.0
1,949,835	-		GFF1924	0.73	+0.7
1,949,839	-		GFF1924	0.75	+0.3
1,949,843	+		GFF1924	0.76	-0.8
1,949,864	+		GFF1924	0.84	+0.2
1,949,890	+				-1.0
1,949,906	+				-0.7
1,949,914	-				+0.3
1,949,914	-				-0.1
1,949,919	-				-0.2
1,949,928	-				-0.4
1,949,928	-				+0.6
1,949,928	-				+2.0
1,949,954	-				-1.6
1,949,984	+				+1.1
1,949,986	-				+0.6
1,949,987	+				+1.3
1,950,021	-				+0.6
1,950,044	-				-0.6
1,950,046	-				+0.4
1,950,134	+		GFF1925	0.14	+0.8
1,950,136	+		GFF1925	0.14	-1.3
1,950,151	+		GFF1925	0.16	+0.3
1,950,156	+		GFF1925	0.17	+0.9
1,950,159	-		GFF1925	0.17	-0.4
1,950,164	+		GFF1925	0.18	-0.0
1,950,164	+		GFF1925	0.18	-0.7
1,950,166	+		GFF1925	0.18	-1.7
1,950,174	-		GFF1925	0.20	-0.9
1,950,190	+		GFF1925	0.22	-0.0
1,950,211	-		GFF1925	0.25	+2.2
1,950,211	-		GFF1925	0.25	+0.1
1,950,223	-		GFF1925	0.27	-0.3
1,950,223	-		GFF1925	0.27	+0.6
1,950,224	+		GFF1925	0.27	-1.3
1,950,224	+		GFF1925	0.27	-1.0
1,950,245	+		GFF1925	0.30	-2.0