Strain Fitness in Sphingobium sp. HT1-2 around GFF1855

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,884,025	-		GFF1853	0.18	-0.8
1,884,025	-		GFF1853	0.18	+0.7
1,884,025	-		GFF1853	0.18	-0.7
1,884,025	-		GFF1853	0.18	-0.4
1,884,040	+		GFF1853	0.20	+0.6
1,884,077	+		GFF1853	0.25	+0.2
1,884,085	-		GFF1853	0.26	+0.4
1,884,112	+		GFF1853	0.29	+0.5
1,884,145	+		GFF1853	0.33	-1.5
1,884,145	+		GFF1853	0.33	-0.5
1,884,145	+		GFF1853	0.33	+0.5
1,884,153	-		GFF1853	0.34	-1.2
1,884,183	+		GFF1853	0.38	-1.1
1,884,183	+		GFF1853	0.38	+1.7
1,884,238	+		GFF1853	0.45	-0.5
1,884,238	+		GFF1853	0.45	-1.4
1,884,238	+		GFF1853	0.45	-0.7
1,884,238	+		GFF1853	0.45	-0.7
1,884,238	+		GFF1853	0.45	+1.1
1,884,238	+		GFF1853	0.45	-0.1
1,884,246	-		GFF1853	0.46	-1.1
1,884,246	-		GFF1853	0.46	-0.5
1,884,246	-		GFF1853	0.46	-1.3
1,884,248	+		GFF1853	0.46	-1.3
1,884,283	+		GFF1853	0.51	-0.7
1,884,283	+		GFF1853	0.51	-1.4
1,884,284	+		GFF1853	0.51	+0.5
1,884,314	-		GFF1853	0.55	-1.5
1,884,437	+		GFF1853	0.70	+0.6
1,884,439	+		GFF1853	0.71	-0.8
1,884,487	+		GFF1853	0.77	+0.7
1,884,494	+		GFF1853	0.78	-0.2
1,884,508	+		GFF1853	0.80	-0.4
1,884,516	-		GFF1853	0.81	-0.7
1,884,541	-		GFF1853	0.84	-0.3
1,884,579	-		GFF1853	0.89	+0.5
1,884,677	+				-0.2
1,884,678	+				-0.3
1,884,678	-				+1.2
1,884,719	+		GFF1854	0.13	-0.7
1,884,727	-		GFF1854	0.16	-0.4
1,884,765	+		GFF1854	0.26	-1.5
1,884,771	-		GFF1854	0.28	-1.9
1,884,771	-		GFF1854	0.28	-0.7
1,884,784	+		GFF1854	0.32	+0.7
1,884,828	-		GFF1854	0.44	-0.1
1,884,838	-		GFF1854	0.47	+0.9
1,884,911	-		GFF1854	0.67	-1.8
1,884,979	+		GFF1854	0.86	+1.0
1,885,034	+				-0.7
1,885,037	-				-0.7
1,885,039	+				-1.4
1,885,102	-				-1.2
1,885,102	-				+0.5
1,885,113	+				+0.0
1,885,113	+				-1.4
1,885,142	-		GFF1855	0.10	-0.3
1,885,164	+		GFF1855	0.12	+0.2
1,885,191	+		GFF1855	0.14	-0.8
1,885,199	-		GFF1855	0.15	-2.1
1,885,235	+		GFF1855	0.18	-0.1
1,885,255	+		GFF1855	0.20	-0.7
1,885,317	+		GFF1855	0.25	-0.8
1,885,346	-		GFF1855	0.28	+0.4
1,885,357	+		GFF1855	0.29	-0.5
1,885,357	+		GFF1855	0.29	-1.1
1,885,372	+		GFF1855	0.30	-0.4
1,885,372	+		GFF1855	0.30	-0.1
1,885,376	+		GFF1855	0.31	+0.5
1,885,380	-		GFF1855	0.31	-1.8
1,885,381	+		GFF1855	0.31	-1.0
1,885,389	-		GFF1855	0.32	-1.8
1,885,389	-		GFF1855	0.32	-0.9
1,885,404	-		GFF1855	0.33	-1.0
1,885,467	-		GFF1855	0.38	+1.8
1,885,500	+		GFF1855	0.41	-1.4
1,885,508	-		GFF1855	0.42	-1.2
1,885,508	-		GFF1855	0.42	-1.1
1,885,508	-		GFF1855	0.42	+1.3
1,885,576	+		GFF1855	0.48	-0.5
1,885,576	+		GFF1855	0.48	-2.5
1,885,576	+		GFF1855	0.48	-1.2
1,885,576	+		GFF1855	0.48	-0.7
1,885,576	+		GFF1855	0.48	-1.0
1,885,581	+		GFF1855	0.48	-0.1
1,885,581	+		GFF1855	0.48	-1.1
1,885,581	+		GFF1855	0.48	+0.2
1,885,584	-		GFF1855	0.49	-1.7
1,885,584	-		GFF1855	0.49	-1.0
1,885,589	-		GFF1855	0.49	-0.3
1,885,589	-		GFF1855	0.49	+1.1
1,885,589	-		GFF1855	0.49	+0.3
1,885,589	-		GFF1855	0.49	-0.9
1,885,602	+		GFF1855	0.50	-0.2
1,885,602	+		GFF1855	0.50	-0.7
1,885,602	+		GFF1855	0.50	-1.7
1,885,602	+		GFF1855	0.50	-1.4
1,885,610	-		GFF1855	0.51	+0.3
1,885,610	-		GFF1855	0.51	-1.0
1,885,610	-		GFF1855	0.51	-1.1
1,885,610	-		GFF1855	0.51	-0.2
1,885,694	-		GFF1855	0.58	-1.7
1,885,823	+		GFF1855	0.69	-1.0
1,885,866	+		GFF1855	0.73	-0.1
1,885,911	-		GFF1855	0.77	-2.0
1,885,935	-		GFF1855	0.79	+0.2
1,885,957	+		GFF1855	0.81	+0.5
1,885,997	+		GFF1855	0.84	+1.2
1,886,013	+		GFF1855	0.86	-0.3
1,886,061	-				-0.2
1,886,079	+				-0.3
1,886,097	+				-2.0
1,886,112	-				+0.4
1,886,112	-				-1.1
1,886,112	-				-1.2
1,886,145	-				-0.5
1,886,177	-				-0.2
1,886,199	+				-0.5
1,886,216	+				-1.4
1,886,224	-				+0.7
1,886,241	-				-1.6
1,886,259	+				+0.3
1,886,259	-				+0.6
1,886,294	-				+0.3
1,886,312	+		GFF1856	0.12	-1.3
1,886,320	-		GFF1856	0.13	-0.8
1,886,320	-		GFF1856	0.13	-2.4
1,886,353	+		GFF1856	0.17	-2.0
1,886,353	+		GFF1856	0.17	-1.4
1,886,353	+		GFF1856	0.17	-0.8
1,886,353	+		GFF1856	0.17	-2.0
1,886,353	+		GFF1856	0.17	-0.1
1,886,353	+		GFF1856	0.17	-1.4
1,886,353	+		GFF1856	0.17	-0.4
1,886,353	+		GFF1856	0.17	+0.9
1,886,353	+		GFF1856	0.17	+0.5
1,886,353	+		GFF1856	0.17	-0.9
1,886,353	+		GFF1856	0.17	+1.2
1,886,353	+		GFF1856	0.17	-1.1
1,886,353	+		GFF1856	0.17	-1.5
1,886,361	-		GFF1856	0.18	+1.9
1,886,361	-		GFF1856	0.18	+1.4
1,886,361	-		GFF1856	0.18	-0.1
1,886,361	-		GFF1856	0.18	+1.9
1,886,361	-		GFF1856	0.18	-0.8
1,886,361	-		GFF1856	0.18	-1.1
1,886,389	+		GFF1856	0.22	+0.9
1,886,406	-		GFF1856	0.24	+1.4
1,886,421	+		GFF1856	0.26	-1.5
1,886,434	+		GFF1856	0.27	+0.5
1,886,439	+		GFF1856	0.28	+0.3
1,886,444	+		GFF1856	0.29	-0.8
1,886,444	+		GFF1856	0.29	+1.3
1,886,452	-		GFF1856	0.30	-0.5
1,886,487	-		GFF1856	0.34	-0.7
1,886,516	+		GFF1856	0.38	-0.9
1,886,522	-		GFF1856	0.39	-0.5
1,886,524	-		GFF1856	0.39	-1.3
1,886,524	-		GFF1856	0.39	-2.6
1,886,524	-		GFF1856	0.39	+2.7
1,886,524	-		GFF1856	0.39	-0.2
1,886,524	-		GFF1856	0.39	+1.8
1,886,524	-		GFF1856	0.39	+1.3
1,886,531	-		GFF1856	0.40	-1.1
1,886,554	+		GFF1856	0.43	+1.0
1,886,575	-		GFF1856	0.46	-1.7
1,886,630	-		GFF1856	0.53	-0.5
1,886,651	-		GFF1856	0.55	+0.7
1,886,711	+		GFF1856	0.63	-2.5
1,886,727	+		GFF1856	0.65	+1.0
1,886,735	-		GFF1856	0.66	-1.6
1,886,735	-		GFF1856	0.66	-0.8
1,886,772	+		GFF1856	0.71	+0.9
1,886,772	+		GFF1856	0.71	-1.0
1,886,772	+		GFF1856	0.71	+0.4
1,886,777	+		GFF1856	0.72	-0.1
1,886,780	-		GFF1856	0.72	+1.3
1,886,780	-		GFF1856	0.72	+2.1
1,886,780	-		GFF1856	0.72	-0.5
1,886,780	-		GFF1856	0.72	+0.9
1,886,780	-		GFF1856	0.72	-0.3
1,886,780	-		GFF1856	0.72	-1.3
1,886,848	+		GFF1856	0.81	-1.3
1,886,848	+		GFF1856	0.81	-2.4
1,886,856	-		GFF1856	0.82	+0.2
1,886,865	+		GFF1856	0.83	-0.5
1,886,865	+		GFF1856	0.83	-1.1
1,886,865	+		GFF1856	0.83	-0.3
1,886,865	+		GFF1856	0.83	-2.1
1,886,865	+		GFF1856	0.83	-0.1
1,886,869	+		GFF1856	0.84	+0.3
1,886,873	-		GFF1856	0.84	+0.8
1,886,873	-		GFF1856	0.84	+0.2
1,886,873	-		GFF1856	0.84	-0.9
1,886,877	-		GFF1856	0.85	-0.3
1,886,912	+		GFF1856	0.89	-0.5
1,886,918	+				-1.5
1,886,929	+				-1.9
1,886,931	+				-1.2
1,886,939	+				+0.9
1,886,947	-				-0.8
1,886,947	-				-1.2
1,886,965	-				-0.4
1,886,970	+				+0.5
1,886,990	+				+1.2
1,886,996	-				+0.8
1,886,996	-				+0.0
1,886,997	+				-0.5
1,886,997	+				-0.4
1,886,997	+				+0.2
1,886,998	-				-1.4
1,887,000	-				+0.0
1,887,011	-				+1.0
1,887,028	+				-1.4
1,887,036	-		GFF1857	0.10	+0.3
1,887,080	-		GFF1857	0.16	-0.5
1,887,090	-		GFF1857	0.17	+1.2
1,887,136	+		GFF1857	0.23	+0.0