Strain Fitness in Sphingobium sp. HT1-2 around GFF1834

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,852,748	-		GFF1832	0.83	-0.7
1,852,768	-		GFF1832	0.84	+0.5
1,852,838	+		GFF1832	0.89	-2.5
1,852,856	-				-1.4
1,852,881	-				+0.7
1,852,895	+				-0.7
1,852,898	-				+1.3
1,852,908	-				+0.3
1,852,936	-				+0.2
1,852,937	+				-0.2
1,852,938	+				-2.1
1,852,938	+				-1.2
1,852,938	+				+0.6
1,852,938	+				+0.2
1,852,938	+				-0.9
1,852,938	+				-1.0
1,852,938	+				-0.9
1,852,938	+				-0.6
1,852,938	+				-0.4
1,852,941	-				-1.1
1,852,941	-				-2.1
1,852,941	-				+0.4
1,852,943	+				+0.1
1,852,945	-				-0.6
1,852,946	-				-0.1
1,852,946	-				+0.5
1,852,946	-				-1.1
1,852,946	-				-1.4
1,852,946	-				+0.7
1,852,946	-				-0.7
1,852,946	-				-0.6
1,852,946	-				-1.1
1,852,946	-				-0.1
1,852,946	-				-1.6
1,852,981	+				+0.5
1,852,996	-				-0.1
1,853,033	-				-1.0
1,853,041	-				+1.8
1,853,041	-				-0.9
1,853,041	-				-1.4
1,853,067	+				-1.2
1,853,067	+				-0.8
1,853,072	+				+0.2
1,853,075	-				+0.7
1,853,076	-				-1.0
1,853,080	-		GFF1833	0.11	+0.6
1,853,094	+		GFF1833	0.13	-1.8
1,853,104	+		GFF1833	0.14	-0.4
1,853,104	+		GFF1833	0.14	+1.1
1,853,107	-		GFF1833	0.14	-0.5
1,853,110	+		GFF1833	0.15	-0.7
1,853,111	+		GFF1833	0.15	-2.8
1,853,112	-		GFF1833	0.15	-1.0
1,853,118	+		GFF1833	0.16	-0.3
1,853,118	-		GFF1833	0.16	+1.5
1,853,152	-		GFF1833	0.21	+1.1
1,853,168	+		GFF1833	0.23	-2.1
1,853,176	+		GFF1833	0.24	-0.9
1,853,189	-		GFF1833	0.26	-0.7
1,853,199	-		GFF1833	0.27	-0.0
1,853,212	-		GFF1833	0.29	-0.5
1,853,221	-		GFF1833	0.31	-1.3
1,853,247	+		GFF1833	0.34	-0.2
1,853,247	+		GFF1833	0.34	-0.3
1,853,247	+		GFF1833	0.34	+0.3
1,853,247	+		GFF1833	0.34	-1.2
1,853,255	-		GFF1833	0.35	-1.1
1,853,255	-		GFF1833	0.35	-2.5
1,853,255	-		GFF1833	0.35	-1.0
1,853,255	-		GFF1833	0.35	+1.0
1,853,265	-		GFF1833	0.37	-0.5
1,853,280	+		GFF1833	0.39	-0.8
1,853,299	+		GFF1833	0.42	-0.5
1,853,299	+		GFF1833	0.42	-0.8
1,853,299	+		GFF1833	0.42	-0.6
1,853,299	+		GFF1833	0.42	+0.7
1,853,314	+		GFF1833	0.44	+1.4
1,853,315	-		GFF1833	0.44	+0.1
1,853,317	-		GFF1833	0.44	+0.2
1,853,322	-		GFF1833	0.45	-0.4
1,853,322	-		GFF1833	0.45	-0.3
1,853,322	-		GFF1833	0.45	+0.8
1,853,351	-		GFF1833	0.49	+1.7
1,853,351	-		GFF1833	0.49	-0.2
1,853,370	+		GFF1833	0.52	+0.7
1,853,378	-		GFF1833	0.53	-0.1
1,853,378	-		GFF1833	0.53	-0.4
1,853,396	-		GFF1833	0.56	-0.7
1,853,440	+		GFF1833	0.62	-0.2
1,853,447	+		GFF1833	0.63	-0.4
1,853,455	-		GFF1833	0.64	+0.2
1,853,455	-		GFF1833	0.64	-0.4
1,853,456	+		GFF1833	0.64	+1.0
1,853,456	-		GFF1833	0.64	+0.6
1,853,466	-		GFF1833	0.66	-0.1
1,853,466	-		GFF1833	0.66	+0.2
1,853,466	-		GFF1833	0.66	+1.4
1,853,468	+		GFF1833	0.66	+2.0
1,853,471	-		GFF1833	0.66	-0.3
1,853,471	-		GFF1833	0.66	+0.8
1,853,473	+		GFF1833	0.67	+0.5
1,853,475	+		GFF1833	0.67	-0.2
1,853,477	-		GFF1833	0.67	+1.1
1,853,477	-		GFF1833	0.67	-0.6
1,853,481	-		GFF1833	0.68	+1.4
1,853,483	-		GFF1833	0.68	+0.2
1,853,483	-		GFF1833	0.68	+0.3
1,853,483	-		GFF1833	0.68	-0.3
1,853,498	-		GFF1833	0.70	-0.6
1,853,550	+		GFF1833	0.77	-0.7
1,853,566	-		GFF1833	0.80	-0.2
1,853,599	+		GFF1833	0.84	+0.4
1,853,604	+		GFF1833	0.85	+0.2
1,853,608	-		GFF1833	0.86	-0.5
1,853,617	-		GFF1833	0.87	-0.3
1,853,624	+		GFF1833	0.88	-0.1
1,853,642	+				+0.5
1,853,650	+				-0.5
1,853,658	-				-0.0
1,853,658	-				-0.8
1,853,658	-				-1.2
1,853,658	-				+0.2
1,853,658	-				-0.2
1,853,658	-				-1.2
1,853,663	-				+0.3
1,853,665	-				-1.8
1,853,670	-				-1.3
1,853,687	+				+0.2
1,853,700	-				+0.1
1,853,700	-				+1.5
1,853,700	-				-0.3
1,853,709	+				-3.1
1,853,709	+				+0.3
1,853,709	+				-0.9
1,853,709	+				-0.4
1,853,709	+				-0.9
1,853,712	-				-0.1
1,853,712	-				-0.0
1,853,714	+				-2.5
1,853,717	-				+1.1
1,853,717	-				+0.5
1,853,717	-				-2.1
1,853,717	-				+1.0
1,853,717	-				-0.7
1,853,722	-				+0.4
1,853,722	-				-2.5
1,853,722	-				+0.1
1,853,735	-				-0.1
1,853,745	+				-1.9
1,853,751	+				-1.3
1,853,751	+				+0.7
1,853,759	-				-1.9
1,853,767	+				-1.1
1,853,768	-				-0.4
1,853,768	-				-0.0
1,853,777	+		GFF1834	0.11	-0.3
1,853,777	+		GFF1834	0.11	+0.5
1,853,777	+		GFF1834	0.11	-1.0
1,853,807	+		GFF1834	0.17	+0.8
1,853,807	+		GFF1834	0.17	-2.3
1,853,807	+		GFF1834	0.17	+0.1
1,853,807	+		GFF1834	0.17	-1.3
1,853,807	+		GFF1834	0.17	+0.5
1,853,807	+		GFF1834	0.17	+0.5
1,853,807	+		GFF1834	0.17	-1.2
1,853,815	-		GFF1834	0.18	+0.6
1,853,815	-		GFF1834	0.18	+0.3
1,853,815	-		GFF1834	0.18	+0.4
1,853,815	-		GFF1834	0.18	+0.2
1,853,839	+		GFF1834	0.22	-0.3
1,853,844	+		GFF1834	0.23	+0.7
1,853,856	-		GFF1834	0.25	+1.2
1,853,858	+		GFF1834	0.26	-0.9
1,853,860	-		GFF1834	0.26	-1.2
1,853,880	+		GFF1834	0.29	+0.4
1,853,880	+		GFF1834	0.29	+0.7
1,853,882	+		GFF1834	0.30	-0.7
1,853,884	-		GFF1834	0.30	-0.1
1,853,888	-		GFF1834	0.31	-0.3
1,853,888	-		GFF1834	0.31	-0.9
1,853,889	-		GFF1834	0.31	+0.1
1,853,934	-		GFF1834	0.39	-1.3
1,853,948	+		GFF1834	0.41	-0.2
1,853,948	+		GFF1834	0.41	-0.8
1,853,948	+		GFF1834	0.41	-1.5
1,853,948	+		GFF1834	0.41	+0.1
1,853,998	+		GFF1834	0.50	+0.4
1,854,002	-		GFF1834	0.51	+1.1
1,854,006	-		GFF1834	0.51	+1.5
1,854,006	-		GFF1834	0.51	+0.7
1,854,017	+		GFF1834	0.53	-0.3
1,854,022	+		GFF1834	0.54	-1.4
1,854,022	+		GFF1834	0.54	-0.7
1,854,022	+		GFF1834	0.54	+0.6
1,854,030	-		GFF1834	0.55	+0.9
1,854,030	-		GFF1834	0.55	+0.4
1,854,030	-		GFF1834	0.55	-0.3
1,854,030	-		GFF1834	0.55	+0.5
1,854,041	-		GFF1834	0.57	+0.1
1,854,042	+		GFF1834	0.57	-1.8
1,854,052	+		GFF1834	0.59	-1.2
1,854,060	-		GFF1834	0.61	-1.1
1,854,064	+		GFF1834	0.61	-0.7
1,854,090	+		GFF1834	0.66	-1.0
1,854,090	+		GFF1834	0.66	-0.7
1,854,093	-		GFF1834	0.66	+0.7
1,854,103	-		GFF1834	0.68	-1.2
1,854,103	-		GFF1834	0.68	-1.0
1,854,120	-		GFF1834	0.71	+0.2
1,854,122	-		GFF1834	0.71	-0.9
1,854,140	+		GFF1834	0.74	-0.8
1,854,143	+		GFF1834	0.75	-0.5
1,854,146	-		GFF1834	0.76	+1.1
1,854,148	-		GFF1834	0.76	-0.1
1,854,148	-		GFF1834	0.76	-0.6
1,854,148	-		GFF1834	0.76	+0.9
1,854,190	+		GFF1834	0.83	-1.4
1,854,231	-				-0.2
1,854,247	-				+0.4
1,854,258	-				+0.1
1,854,265	+				-0.2
1,854,265	+				+0.1
1,854,273	-				-0.9
1,854,274	-				-0.9
1,854,281	+				-0.3
1,854,281	+				+0.4
1,854,281	+				-0.5
1,854,281	+				-1.6
1,854,281	+				-1.3
1,854,281	+				-0.2
1,854,281	-				-0.4
1,854,289	-				+1.0
1,854,289	-				+0.2
1,854,289	-				-2.1
1,854,289	-				-1.7
1,854,289	-				+0.3
1,854,289	-				-0.4
1,854,289	-				+1.1
1,854,289	-				+0.9
1,854,324	-				-0.3
1,854,328	+				-0.4
1,854,328	+				+0.2
1,854,341	+				+0.4
1,854,341	+				-0.4
1,854,341	+				-0.8
1,854,341	+				+1.2
1,854,341	+				-0.1
1,854,349	-		GFF1835	0.11	+0.3
1,854,349	-		GFF1835	0.11	-0.1
1,854,349	-		GFF1835	0.11	-1.3
1,854,349	-		GFF1835	0.11	+0.9
1,854,361	-		GFF1835	0.13	-2.4
1,854,367	+		GFF1835	0.14	-0.2
1,854,367	+		GFF1835	0.14	-1.5
1,854,375	-		GFF1835	0.16	-1.5
1,854,375	-		GFF1835	0.16	-1.0
1,854,390	+		GFF1835	0.18	+1.1
1,854,390	+		GFF1835	0.18	+0.2
1,854,390	+		GFF1835	0.18	-0.5
1,854,452	-		GFF1835	0.29	-1.4
1,854,455	-		GFF1835	0.30	-2.1
1,854,473	+		GFF1835	0.33	-0.3
1,854,481	-		GFF1835	0.34	-1.0
1,854,486	+		GFF1835	0.35	-1.6
1,854,486	-		GFF1835	0.35	-0.4
1,854,496	-		GFF1835	0.37	+1.5
1,854,497	+		GFF1835	0.37	-1.9
1,854,504	+		GFF1835	0.38	-0.5
1,854,512	-		GFF1835	0.39	+0.0
1,854,530	+		GFF1835	0.42	-2.5
1,854,530	+		GFF1835	0.42	+0.1
1,854,531	+		GFF1835	0.43	-1.6
1,854,533	-		GFF1835	0.43	+1.5
1,854,537	+		GFF1835	0.44	+0.7
1,854,560	+		GFF1835	0.48	+0.5
1,854,568	-		GFF1835	0.49	-0.6
1,854,596	-		GFF1835	0.54	-0.2
1,854,606	-		GFF1835	0.55	+0.8
1,854,637	+		GFF1835	0.61	-1.8
1,854,675	+		GFF1835	0.67	+0.6
1,854,691	+		GFF1835	0.70	-0.2
1,854,691	-		GFF1835	0.70	+0.6
1,854,696	+		GFF1835	0.71	+0.5
1,854,698	+		GFF1835	0.71	+1.8
1,854,706	-		GFF1835	0.73	-0.1
1,854,706	-		GFF1835	0.73	-1.1
1,854,734	+		GFF1835	0.77	-0.5
1,854,734	+		GFF1835	0.77	-0.0
1,854,741	+		GFF1835	0.79	-1.1
1,854,741	+		GFF1835	0.79	-0.6
1,854,742	-		GFF1835	0.79	-1.3
1,854,769	-		GFF1835	0.84	+1.7
1,854,782	+		GFF1835	0.86	-0.5
1,854,792	+		GFF1835	0.87	-0.9
1,854,793	+		GFF1835	0.88	-0.3
1,854,801	-		GFF1835	0.89	-0.7
1,854,801	-		GFF1835	0.89	+0.3
1,854,801	-		GFF1835	0.89	-1.3
1,854,801	-		GFF1835	0.89	+0.3
1,854,801	-		GFF1835	0.89	-1.8
1,854,817	-				+0.2
1,854,820	+				-1.5
1,854,828	+				-0.4
1,854,828	+				+1.2
1,854,834	+				-0.4
1,854,835	-				-0.1
1,854,836	-				-0.9
1,854,836	-				-1.9
1,854,836	-				+1.0
1,854,840	+				+0.5
1,854,848	-				-1.5
1,854,848	-				+0.4
1,854,848	-				-0.0
1,854,858	-				-0.0
1,854,905	+				+0.1
1,854,910	+				-2.0
1,854,914	-				-0.8
1,854,926	+				-1.4
1,854,934	-				+0.7
1,854,953	+				-1.6
1,854,960	+				+0.9
1,854,960	+				-0.1
1,854,960	+				+0.4
1,854,968	-				-0.2
1,854,974	-				+1.3
1,855,000	-				-0.1
1,855,009	+				-0.8
1,855,014	+				+0.1
1,855,016	+				-1.7
1,855,071	+				-0.7
1,855,071	+				-1.6
1,855,078	-				-0.6
1,855,081	+				-0.6
1,855,082	+				-1.7
1,855,088	+				-0.3
1,855,088	+				+0.5
1,855,089	-				-0.7
1,855,090	-				-1.7
1,855,132	-				-0.9
1,855,145	-				+0.1
1,855,148	+				-0.9
1,855,163	+				+1.2
1,855,173	+				-0.3
1,855,173	+				+0.4
1,855,173	+				+0.4
1,855,173	+				+0.6
1,855,173	+				+0.5
1,855,173	+				+0.9
1,855,173	+				-1.9
1,855,173	+				+0.5
1,855,173	+				-0.4
1,855,173	+				+0.2
1,855,173	+				-2.1
1,855,173	+				-0.8
1,855,173	+				+0.2
1,855,181	-				-1.4
1,855,181	-				+0.4
1,855,181	-				-0.6
1,855,181	-				-1.8
1,855,181	-				-0.8
1,855,181	-				-0.2
1,855,181	-				-2.9
1,855,182	+				+0.1
1,855,215	+		GFF1836	0.10	+0.8
1,855,219	-		GFF1836	0.10	+0.9
1,855,220	+		GFF1836	0.10	-0.1
1,855,253	-		GFF1836	0.11	-1.3
1,855,277	-		GFF1836	0.12	+1.2
1,855,284	+		GFF1836	0.12	+0.9
1,855,284	+		GFF1836	0.12	-1.1