Strain Fitness in Sphingobium sp. HT1-2 around GFF1818

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,839,871	-		GFF1817	0.25	+0.9
1,839,887	-		GFF1817	0.27	+0.7
1,839,889	+		GFF1817	0.27	-0.1
1,839,889	+		GFF1817	0.27	-0.1
1,839,893	-		GFF1817	0.27	-1.1
1,839,924	+		GFF1817	0.29	+0.7
1,839,937	+		GFF1817	0.30	+0.1
1,839,956	+		GFF1817	0.32	+1.0
1,839,959	-		GFF1817	0.32	-0.0
1,839,971	-		GFF1817	0.33	+0.4
1,839,981	-		GFF1817	0.34	-1.2
1,839,989	+		GFF1817	0.34	-0.6
1,840,047	-		GFF1817	0.39	-0.8
1,840,057	-		GFF1817	0.39	-0.3
1,840,068	+		GFF1817	0.40	+1.7
1,840,080	+		GFF1817	0.41	+0.2
1,840,095	+		GFF1817	0.42	-0.4
1,840,098	-		GFF1817	0.42	-0.0
1,840,115	-		GFF1817	0.44	-0.9
1,840,115	-		GFF1817	0.44	-0.6
1,840,121	-		GFF1817	0.44	-0.1
1,840,128	+		GFF1817	0.45	-1.3
1,840,133	+		GFF1817	0.45	+0.2
1,840,136	-		GFF1817	0.45	+1.2
1,840,141	-		GFF1817	0.46	+0.5
1,840,143	+		GFF1817	0.46	-0.8
1,840,172	+		GFF1817	0.48	-1.2
1,840,182	+		GFF1817	0.49	-0.4
1,840,182	+		GFF1817	0.49	-0.2
1,840,182	+		GFF1817	0.49	-1.9
1,840,190	-		GFF1817	0.49	+0.1
1,840,190	-		GFF1817	0.49	+1.2
1,840,190	-		GFF1817	0.49	-0.2
1,840,195	-		GFF1817	0.50	-0.1
1,840,219	+		GFF1817	0.51	-1.9
1,840,224	-		GFF1817	0.52	+1.1
1,840,227	-		GFF1817	0.52	+0.8
1,840,237	+		GFF1817	0.53	-0.3
1,840,242	+		GFF1817	0.53	-1.9
1,840,242	+		GFF1817	0.53	+0.2
1,840,247	+		GFF1817	0.53	-0.9
1,840,247	+		GFF1817	0.53	-0.0
1,840,255	-		GFF1817	0.54	-0.7
1,840,255	-		GFF1817	0.54	+0.1
1,840,262	-		GFF1817	0.55	+1.2
1,840,278	+		GFF1817	0.56	-0.6
1,840,287	+		GFF1817	0.56	+0.1
1,840,295	-		GFF1817	0.57	+0.2
1,840,297	+		GFF1817	0.57	-0.8
1,840,297	+		GFF1817	0.57	-1.8
1,840,297	+		GFF1817	0.57	-1.4
1,840,305	-		GFF1817	0.58	-0.2
1,840,305	-		GFF1817	0.58	-0.3
1,840,305	-		GFF1817	0.58	-0.1
1,840,305	-		GFF1817	0.58	+0.4
1,840,323	+		GFF1817	0.59	-0.4
1,840,323	+		GFF1817	0.59	-0.2
1,840,328	+		GFF1817	0.60	-1.0
1,840,328	+		GFF1817	0.60	-0.5
1,840,328	+		GFF1817	0.60	+0.2
1,840,329	-		GFF1817	0.60	-2.0
1,840,331	-		GFF1817	0.60	+0.4
1,840,331	-		GFF1817	0.60	-0.4
1,840,331	-		GFF1817	0.60	-0.7
1,840,331	-		GFF1817	0.60	+1.0
1,840,336	-		GFF1817	0.60	+1.1
1,840,336	-		GFF1817	0.60	-1.0
1,840,336	-		GFF1817	0.60	-0.0
1,840,336	-		GFF1817	0.60	-0.3
1,840,392	-		GFF1817	0.64	-1.9
1,840,400	-		GFF1817	0.65	+0.1
1,840,409	+		GFF1817	0.66	-0.1
1,840,409	-		GFF1817	0.66	-2.5
1,840,447	-		GFF1817	0.68	-0.3
1,840,457	-		GFF1817	0.69	+1.0
1,840,466	+		GFF1817	0.70	-1.3
1,840,466	+		GFF1817	0.70	-0.0
1,840,544	+		GFF1817	0.76	-1.3
1,840,563	+		GFF1817	0.77	+0.1
1,840,566	-		GFF1817	0.77	-1.0
1,840,578	+		GFF1817	0.78	+0.1
1,840,578	+		GFF1817	0.78	+0.8
1,840,586	-		GFF1817	0.79	-0.1
1,840,615	+		GFF1817	0.81	-1.5
1,840,691	+		GFF1817	0.87	+0.2
1,840,696	+		GFF1817	0.87	-0.9
1,840,696	+		GFF1817	0.87	-0.4
1,840,697	+		GFF1817	0.87	+0.2
1,840,713	+		GFF1817	0.88	+1.2
1,840,713	+		GFF1817	0.88	+0.4
1,840,714	-		GFF1817	0.88	+0.7
1,840,714	-		GFF1817	0.88	+0.6
1,840,714	-		GFF1817	0.88	-0.0
1,840,721	-		GFF1817	0.89	+0.1
1,840,721	-		GFF1817	0.89	-0.2
1,840,726	-		GFF1817	0.89	+0.5
1,840,726	-		GFF1817	0.89	-1.9
1,840,732	+		GFF1817	0.90	+0.2
1,840,732	+		GFF1817	0.90	-0.4
1,840,732	+		GFF1817	0.90	-0.0
1,840,740	-				+0.1
1,840,740	-				+1.3
1,840,740	-				+0.2
1,840,740	-				-0.2
1,840,779	-				-1.7
1,840,838	-				+0.3
1,840,839	+				-1.0
1,840,856	+				-0.2
1,840,856	+				-1.8
1,840,856	+				-0.4
1,840,864	-				-1.6
1,840,874	+				+0.9
1,840,893	+				-1.2
1,840,893	+				+0.7
1,840,901	-				+0.1
1,840,912	+		GFF1818	0.10	-1.1
1,840,932	-		GFF1818	0.14	-0.7
1,840,939	+		GFF1818	0.15	-1.5
1,840,939	+		GFF1818	0.15	+1.5
1,840,939	+		GFF1818	0.15	+1.5
1,840,939	+		GFF1818	0.15	-0.4
1,840,939	+		GFF1818	0.15	+1.4
1,840,939	+		GFF1818	0.15	-1.7
1,840,947	+		GFF1818	0.17	+0.5
1,840,947	+		GFF1818	0.17	-1.7
1,840,947	+		GFF1818	0.17	-1.5
1,840,947	+		GFF1818	0.17	+1.1
1,840,947	-		GFF1818	0.17	-0.9
1,840,947	-		GFF1818	0.17	+0.0
1,840,947	-		GFF1818	0.17	+0.5
1,840,947	-		GFF1818	0.17	-1.1
1,840,947	-		GFF1818	0.17	-1.1
1,840,947	-		GFF1818	0.17	-0.0
1,840,947	-		GFF1818	0.17	-0.5
1,840,947	-		GFF1818	0.17	-0.3
1,840,955	-		GFF1818	0.18	-1.2
1,840,955	-		GFF1818	0.18	+0.3
1,840,957	+		GFF1818	0.19	-1.4
1,840,963	+		GFF1818	0.20	-0.4
1,840,985	+		GFF1818	0.24	+0.3
1,840,993	-		GFF1818	0.25	+1.1
1,840,993	-		GFF1818	0.25	+0.4
1,840,993	-		GFF1818	0.25	-0.5
1,841,039	+		GFF1818	0.34	+0.2
1,841,040	-		GFF1818	0.34	+0.1
1,841,048	+		GFF1818	0.36	+0.2
1,841,056	-		GFF1818	0.37	-0.4
1,841,064	+		GFF1818	0.39	-0.1
1,841,072	-		GFF1818	0.40	-1.1
1,841,105	-		GFF1818	0.46	-1.1
1,841,110	-		GFF1818	0.47	-0.4
1,841,115	-		GFF1818	0.48	+0.4
1,841,132	-		GFF1818	0.51	-0.2
1,841,139	+		GFF1818	0.53	-0.1
1,841,174	+		GFF1818	0.59	-1.2
1,841,174	+		GFF1818	0.59	-0.1
1,841,174	+		GFF1818	0.59	-0.3
1,841,180	-		GFF1818	0.60	-2.1
1,841,180	-		GFF1818	0.60	-2.8
1,841,182	-		GFF1818	0.61	-0.1
1,841,189	+		GFF1818	0.62	+0.1
1,841,253	+		GFF1818	0.74	+0.6
1,841,263	-		GFF1818	0.76	+0.1
1,841,277	-		GFF1818	0.79	+0.4
1,841,289	+		GFF1818	0.81	-2.3
1,841,289	+		GFF1818	0.81	+0.8
1,841,297	-		GFF1818	0.82	-0.8
1,841,315	+		GFF1818	0.86	-1.9
1,841,315	+		GFF1818	0.86	+1.1
1,841,315	+		GFF1818	0.86	+0.2
1,841,323	-		GFF1818	0.87	+0.2
1,841,323	-		GFF1818	0.87	-0.6
1,841,340	-				-1.3
1,841,369	+				+1.2
1,841,404	+				-0.4
1,841,413	-				-0.9
1,841,425	+				-0.8
1,841,425	+				+0.1
1,841,433	-				-1.4
1,841,433	-				-0.9
1,841,437	+				-0.2
1,841,445	-				-0.5
1,841,447	+				+0.2
1,841,447	+				+0.1
1,841,447	+				-0.5
1,841,450	-				-1.2
1,841,455	-				+0.5
1,841,455	-				-0.3
1,841,455	-				+0.4
1,841,458	+				+0.9
1,841,466	-		GFF1819	0.15	-0.4
1,841,511	-		GFF1819	0.76	+0.4
1,841,521	-				+1.6
1,841,562	+				+0.5
1,841,562	+				-0.3
1,841,574	+				-2.1
1,841,609	+				-0.1
1,841,609	+				+0.6
1,841,609	+				-0.1
1,841,616	+				-1.9
1,841,621	+				+0.1
1,841,621	+				-0.3
1,841,626	+				-2.3
1,841,631	+				+0.6
1,841,631	+				+1.2
1,841,631	+				-0.7
1,841,631	+				+0.5
1,841,631	+				-1.3
1,841,631	+				-0.4
1,841,631	+				-2.5
1,841,631	+				-0.2
1,841,631	+				-0.1
1,841,631	+				+0.4
1,841,636	+				+0.2
1,841,639	-				+1.3
1,841,639	-				+2.3
1,841,639	-				-2.6
1,841,639	-				-0.9
1,841,639	-				+0.1
1,841,639	-				-1.1
1,841,639	-				-1.2
1,841,639	-				-0.5
1,841,639	-				-0.1
1,841,644	-				-0.3
1,841,671	+				-0.3
1,841,681	+		GFF1820	0.10	+0.4
1,841,694	-		GFF1820	0.12	-0.6
1,841,701	-		GFF1820	0.13	-1.3
1,841,712	+		GFF1820	0.14	-1.7
1,841,746	+		GFF1820	0.19	-1.9
1,841,795	-		GFF1820	0.25	+0.1
1,841,803	-		GFF1820	0.26	-2.9
1,841,810	+		GFF1820	0.27	-0.3
1,841,822	+		GFF1820	0.28	+0.2
1,841,822	+		GFF1820	0.28	+0.0
1,841,841	-		GFF1820	0.31	+0.1
1,841,842	-		GFF1820	0.31	-0.1
1,841,894	+		GFF1820	0.38	-0.9
1,841,908	+		GFF1820	0.39	-0.1
1,841,908	+		GFF1820	0.39	-0.4
1,841,916	-		GFF1820	0.40	-0.3
1,841,926	+		GFF1820	0.42	+0.2
1,841,947	-		GFF1820	0.44	-0.3
1,841,963	+		GFF1820	0.46	-0.8
1,841,963	+		GFF1820	0.46	+1.0
1,841,963	+		GFF1820	0.46	+1.0
1,841,963	+		GFF1820	0.46	-0.2
1,841,963	+		GFF1820	0.46	+0.6
1,841,971	-		GFF1820	0.48	-0.2
1,841,972	-		GFF1820	0.48	+0.9
1,841,973	+		GFF1820	0.48	+0.9
1,841,973	+		GFF1820	0.48	+0.4
1,841,979	-		GFF1820	0.49	+0.6
1,841,981	-		GFF1820	0.49	-1.2
1,841,981	-		GFF1820	0.49	-1.1
1,841,981	-		GFF1820	0.49	-1.3
1,841,981	-		GFF1820	0.49	-0.7
1,841,981	-		GFF1820	0.49	-1.7
1,841,981	-		GFF1820	0.49	-1.3
1,841,981	-		GFF1820	0.49	-0.6
1,841,981	-		GFF1820	0.49	-0.9
1,841,988	+		GFF1820	0.50	-0.8
1,841,993	+		GFF1820	0.50	-0.3
1,841,993	+		GFF1820	0.50	+0.7
1,841,996	-		GFF1820	0.51	-0.5
1,842,001	-		GFF1820	0.51	-1.6
1,842,001	-		GFF1820	0.51	-0.1
1,842,015	-		GFF1820	0.53	-0.4
1,842,064	+		GFF1820	0.59	-0.4
1,842,068	+		GFF1820	0.60	-0.2
1,842,072	-		GFF1820	0.60	+1.0
1,842,091	-		GFF1820	0.63	+0.2
1,842,106	-		GFF1820	0.65	-0.3
1,842,108	+		GFF1820	0.65	-1.8
1,842,118	+		GFF1820	0.66	+0.5
1,842,118	+		GFF1820	0.66	-1.1
1,842,118	+		GFF1820	0.66	-0.4
1,842,120	+		GFF1820	0.67	-1.3
1,842,123	+		GFF1820	0.67	+1.6
1,842,123	+		GFF1820	0.67	-1.9
1,842,126	-		GFF1820	0.67	-0.7
1,842,126	-		GFF1820	0.67	-1.2
1,842,126	-		GFF1820	0.67	-0.4
1,842,131	-		GFF1820	0.68	-1.7
1,842,144	+		GFF1820	0.70	-0.8
1,842,146	+		GFF1820	0.70	-1.4
1,842,154	-		GFF1820	0.71	-1.7
1,842,155	+		GFF1820	0.71	-0.7
1,842,155	+		GFF1820	0.71	+1.2
1,842,157	-		GFF1820	0.71	-0.3
1,842,163	-		GFF1820	0.72	-0.1
1,842,163	-		GFF1820	0.72	-0.6
1,842,163	-		GFF1820	0.72	-1.4
1,842,163	-		GFF1820	0.72	+0.4
1,842,176	+		GFF1820	0.74	+0.4
1,842,178	+		GFF1820	0.74	+0.1
1,842,193	+		GFF1820	0.76	+0.4
1,842,194	+		GFF1820	0.76	-0.3
1,842,240	+		GFF1820	0.82	+1.5
1,842,248	+		GFF1820	0.83	+0.5
1,842,255	+		GFF1820	0.84	+1.2
1,842,284	+		GFF1820	0.87	+0.8
1,842,291	+		GFF1820	0.88	+0.5
1,842,291	+		GFF1820	0.88	-0.1
1,842,297	-		GFF1820	0.89	+0.1
1,842,350	+				-0.0
1,842,360	+				-1.5
1,842,360	+				-0.5
1,842,360	+				-0.9
1,842,361	+				-0.6
1,842,368	-				+0.3
1,842,368	-				+0.1
1,842,375	+				+0.5
1,842,375	+				+0.4
1,842,375	+				-0.1
1,842,375	+				-0.1
1,842,385	+				+0.6