Strain Fitness in Sphingobium sp. HT1-2 around GFF1762

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,790,643	+		GFF1760	0.71	+0.4
1,790,643	+		GFF1760	0.71	-0.1
1,790,643	+		GFF1760	0.71	+0.8
1,790,643	+		GFF1760	0.71	-0.1
1,790,643	+		GFF1760	0.71	-0.1
1,790,643	+		GFF1760	0.71	-0.6
1,790,643	+		GFF1760	0.71	+0.3
1,790,643	+		GFF1760	0.71	+1.7
1,790,651	-		GFF1760	0.72	-1.5
1,790,651	-		GFF1760	0.72	+1.1
1,790,651	-		GFF1760	0.72	+0.6
1,790,651	-		GFF1760	0.72	+0.9
1,790,653	+		GFF1760	0.72	+0.9
1,790,661	-		GFF1760	0.73	+0.1
1,790,661	-		GFF1760	0.73	+0.2
1,790,661	-		GFF1760	0.73	+1.0
1,790,673	+		GFF1760	0.75	-2.7
1,790,678	+		GFF1760	0.76	+0.3
1,790,720	+		GFF1760	0.81	+0.1
1,790,734	+		GFF1760	0.83	+0.5
1,790,742	-		GFF1760	0.84	-0.2
1,790,756	+		GFF1760	0.86	-1.6
1,790,756	+		GFF1760	0.86	-0.2
1,790,758	+		GFF1760	0.87	-1.7
1,790,758	+		GFF1760	0.87	-0.4
1,790,763	+		GFF1760	0.87	-0.7
1,790,770	+		GFF1760	0.88	+0.1
1,790,773	-		GFF1760	0.89	-2.1
1,790,787	+				+0.1
1,790,795	-				+0.1
1,790,795	-				+0.2
1,790,795	-				-0.0
1,790,805	+				-0.5
1,790,805	+				+0.7
1,790,805	+				+0.3
1,790,814	+				-0.3
1,790,865	+				-1.1
1,790,865	+				-1.6
1,790,879	+				-1.1
1,790,879	+				+0.2
1,790,883	+				+0.2
1,790,891	-				+1.7
1,790,897	+				-1.6
1,790,914	-				+0.5
1,790,915	+				+0.1
1,790,923	-				+1.2
1,790,930	+				-0.1
1,790,931	-				-0.0
1,790,935	+				+0.7
1,790,935	+				-1.1
1,790,938	-				+0.1
1,790,943	-				-0.9
1,790,943	-				-1.6
1,790,943	-				-1.4
1,790,963	+				-0.3
1,790,963	+				-2.2
1,790,971	-				-1.3
1,790,971	-				+0.5
1,790,997	+				+0.9
1,790,997	+				-0.2
1,791,054	-				-0.3
1,791,061	-				-0.4
1,791,063	+				-1.2
1,791,064	-				-1.9
1,791,078	+				+0.3
1,791,086	-		GFF1761	0.13	-0.6
1,791,091	+		GFF1761	0.15	+0.7
1,791,091	+		GFF1761	0.15	-0.1
1,791,091	+		GFF1761	0.15	-2.7
1,791,099	-		GFF1761	0.18	+2.5
1,791,103	+		GFF1761	0.20	-1.0
1,791,111	+		GFF1761	0.24	+0.7
1,791,111	-		GFF1761	0.24	+0.6
1,791,111	-		GFF1761	0.24	-1.0
1,791,111	-		GFF1761	0.24	-0.3
1,791,184	+		GFF1761	0.55	+0.5
1,791,192	-		GFF1761	0.58	+0.2
1,791,192	-		GFF1761	0.58	+0.3
1,791,209	+		GFF1761	0.65	-2.0
1,791,209	+		GFF1761	0.65	-1.4
1,791,234	+		GFF1761	0.76	-0.2
1,791,234	+		GFF1761	0.76	-0.1
1,791,269	+				+1.3
1,791,313	+				-0.1
1,791,314	+				+0.9
1,791,334	+				+0.5
1,791,352	+				-0.3
1,791,360	-				+1.2
1,791,383	-				+0.3
1,791,383	-				-2.7
1,791,388	-				-1.7
1,791,390	+				-0.9
1,791,397	-				-1.0
1,791,476	+				-0.7
1,791,483	-				+0.2
1,791,484	-				+0.5
1,791,496	+				-0.2
1,791,517	+				-0.2
1,791,539	+				-0.2
1,791,539	+				-0.3
1,791,566	+				-0.0
1,791,613	+				-1.1
1,791,621	-				+1.7
1,791,625	-				+0.4
1,791,680	-		GFF1762	0.11	-0.4
1,791,712	-		GFF1762	0.17	-1.6
1,791,712	-		GFF1762	0.17	-0.6
1,791,715	+		GFF1762	0.18	+0.4
1,791,717	-		GFF1762	0.18	-0.5
1,791,730	+		GFF1762	0.20	+0.3
1,791,733	-		GFF1762	0.21	-0.3
1,791,808	-		GFF1762	0.34	+0.2
1,791,839	+		GFF1762	0.40	-0.3
1,791,858	+		GFF1762	0.43	-0.3
1,791,859	+		GFF1762	0.44	+0.1
1,791,866	-		GFF1762	0.45	-0.2
1,791,867	-		GFF1762	0.45	-1.4
1,791,868	+		GFF1762	0.45	-0.5
1,791,878	+		GFF1762	0.47	+0.4
1,791,878	+		GFF1762	0.47	-0.3
1,791,886	-		GFF1762	0.48	-0.4
1,791,888	-		GFF1762	0.49	+0.9
1,791,888	-		GFF1762	0.49	-0.0
1,791,960	-		GFF1762	0.62	+0.0
1,791,990	-		GFF1762	0.67	-0.3
1,791,990	-		GFF1762	0.67	-1.4
1,792,023	+		GFF1762	0.73	-0.0
1,792,023	+		GFF1762	0.73	-1.0
1,792,051	-		GFF1762	0.78	-1.2
1,792,058	+		GFF1762	0.79	-0.1
1,792,087	-		GFF1762	0.84	+1.8
1,792,126	+				-1.7
1,792,126	+				-2.1
1,792,176	-				-2.1
1,792,180	+				-1.3
1,792,194	+				-0.6
1,792,216	+				-1.5
1,792,275	+		GFF1763	0.14	-0.0
1,792,275	+		GFF1763	0.14	+0.3
1,792,342	+		GFF1763	0.27	+0.5
1,792,342	+		GFF1763	0.27	-0.1
1,792,385	+		GFF1763	0.35	+0.3
1,792,387	-		GFF1763	0.35	-1.5
1,792,393	-		GFF1763	0.36	+0.7
1,792,419	-		GFF1763	0.41	-2.0
1,792,440	+		GFF1763	0.45	+0.9
1,792,448	-		GFF1763	0.47	-0.9
1,792,448	-		GFF1763	0.47	-0.1
1,792,448	-		GFF1763	0.47	+1.1
1,792,448	-		GFF1763	0.47	+1.0
1,792,455	+		GFF1763	0.48	-0.2
1,792,477	+		GFF1763	0.52	-0.9
1,792,477	+		GFF1763	0.52	+2.0
1,792,477	+		GFF1763	0.52	+0.9
1,792,477	+		GFF1763	0.52	-0.9
1,792,477	+		GFF1763	0.52	+1.2
1,792,483	+		GFF1763	0.53	-0.3
1,792,483	+		GFF1763	0.53	-0.2
1,792,483	+		GFF1763	0.53	+0.5
1,792,483	+		GFF1763	0.53	-0.1
1,792,483	+		GFF1763	0.53	-0.5
1,792,485	-		GFF1763	0.53	-1.6
1,792,485	-		GFF1763	0.53	+0.4
1,792,485	-		GFF1763	0.53	-0.4
1,792,485	-		GFF1763	0.53	-0.1
1,792,485	-		GFF1763	0.53	+0.5
1,792,485	-		GFF1763	0.53	-1.4
1,792,491	-		GFF1763	0.55	-0.7
1,792,491	-		GFF1763	0.55	-0.2
1,792,491	-		GFF1763	0.55	-0.1
1,792,491	-		GFF1763	0.55	-0.5
1,792,500	+		GFF1763	0.56	+1.5
1,792,500	+		GFF1763	0.56	-0.7
1,792,501	-		GFF1763	0.56	+0.5
1,792,513	+		GFF1763	0.59	+0.7
1,792,513	+		GFF1763	0.59	-1.7
1,792,513	+		GFF1763	0.59	-0.7
1,792,513	+		GFF1763	0.59	+0.2
1,792,521	+		GFF1763	0.60	+0.7
1,792,521	-		GFF1763	0.60	-0.6
1,792,521	-		GFF1763	0.60	-0.7
1,792,521	-		GFF1763	0.60	-1.0
1,792,529	-		GFF1763	0.62	+1.6
1,792,536	+		GFF1763	0.63	+0.6
1,792,536	+		GFF1763	0.63	-0.8
1,792,612	+		GFF1763	0.77	-1.5
1,792,620	-		GFF1763	0.79	+0.1
1,792,628	+		GFF1763	0.80	-1.4
1,792,671	+		GFF1763	0.88	+0.8
1,792,681	+				+0.6
1,792,681	+				+0.1
1,792,699	-				-2.1
1,792,701	-				-0.4
1,792,705	-				+0.0
1,792,705	-				-0.0
1,792,709	+				-1.1
1,792,714	+				+0.7
1,792,719	+				+0.8
1,792,773	+				-0.9
1,792,793	+				-0.4
1,792,848	+				-2.3
1,792,851	-				+0.8
1,792,859	+				-0.1
1,792,874	+				-1.5
1,792,888	+				+0.8
1,792,897	-				-0.5
1,792,899	+				-0.5
1,792,907	-				+0.1
1,792,907	-				-0.3
1,792,926	+				-0.3
1,792,936	+				+0.3
1,792,944	-				-0.5
1,792,948	+				-0.3
1,792,997	-				-0.4
1,793,005	+				-1.3
1,793,017	+				-0.6
1,793,020	-				-1.4
1,793,039	-				-1.3
1,793,044	+				+0.6
1,793,044	+				-2.2
1,793,052	-				+0.0
1,793,052	-				+0.2
1,793,054	+				-0.4
1,793,054	+				-0.7
1,793,054	+				-0.4
1,793,054	+				-0.5
1,793,059	+				+0.4
1,793,059	+				-0.5
1,793,059	+				+1.9
1,793,059	+				-0.5
1,793,059	+				+0.2
1,793,059	+				-1.1
1,793,062	-				-0.4
1,793,062	-				-0.3
1,793,062	-				-1.4
1,793,062	-				-0.6
1,793,067	-				+1.3
1,793,067	-				+0.1
1,793,067	-				+1.6
1,793,067	-				-1.5
1,793,095	+				-2.1
1,793,115	-				+0.0
1,793,117	+				-1.6
1,793,117	+				-2.5
1,793,120	-				-0.0
1,793,122	+				-0.2
1,793,122	+				-0.9
1,793,123	-				+0.6
1,793,125	-				-0.2
1,793,125	-				+0.6
1,793,125	-				+0.5
1,793,130	-				-1.3
1,793,130	-				-0.2
1,793,135	-				-1.5
1,793,135	-				+0.3
1,793,135	-				-1.9
1,793,140	-				-2.6
1,793,140	-				-0.7
1,793,140	-				+0.2
1,793,140	-				+1.2
1,793,140	-				+0.6
1,793,164	-				+0.6