Strain Fitness in Sphingobium sp. HT1-2 around GFF1722

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,745,235	+		GFF1721	0.62	+0.1
1,745,263	+		GFF1721	0.63	-1.2
1,745,268	+		GFF1721	0.64	-0.6
1,745,268	+		GFF1721	0.64	+0.5
1,745,268	+		GFF1721	0.64	-1.5
1,745,268	+		GFF1721	0.64	-0.8
1,745,268	+		GFF1721	0.64	-1.5
1,745,268	+		GFF1721	0.64	-0.7
1,745,268	+		GFF1721	0.64	+0.9
1,745,268	+		GFF1721	0.64	-1.7
1,745,268	+		GFF1721	0.64	+0.1
1,745,268	+		GFF1721	0.64	+0.1
1,745,271	-		GFF1721	0.64	-1.2
1,745,276	-		GFF1721	0.64	+0.4
1,745,276	-		GFF1721	0.64	-0.5
1,745,276	-		GFF1721	0.64	-0.0
1,745,276	-		GFF1721	0.64	+0.0
1,745,276	-		GFF1721	0.64	-0.6
1,745,276	-		GFF1721	0.64	+0.6
1,745,276	-		GFF1721	0.64	+0.5
1,745,276	-		GFF1721	0.64	-0.6
1,745,276	-		GFF1721	0.64	+0.8
1,745,276	-		GFF1721	0.64	-0.7
1,745,336	-		GFF1721	0.68	-0.3
1,745,349	-		GFF1721	0.69	-0.6
1,745,388	+		GFF1721	0.71	-1.0
1,745,389	+		GFF1721	0.71	+0.4
1,745,410	-		GFF1721	0.73	-0.2
1,745,522	+		GFF1721	0.80	-1.0
1,745,522	+		GFF1721	0.80	-0.6
1,745,547	+		GFF1721	0.81	-1.3
1,745,582	-		GFF1721	0.83	+0.2
1,745,588	-		GFF1721	0.84	+1.4
1,745,626	+		GFF1721	0.86	+0.5
1,745,641	+		GFF1721	0.87	+1.6
1,745,685	+		GFF1721	0.90	+0.7
1,745,771	+				+0.2
1,745,779	-				+0.5
1,745,779	-				-1.0
1,745,798	-				+0.4
1,745,809	+				+0.9
1,745,809	+				+0.3
1,745,830	-				-0.3
1,745,853	-				+0.1
1,745,870	+				+1.7
1,745,878	-				-0.2
1,745,898	+				-0.8
1,745,933	-				+0.6
1,745,947	+				-1.0
1,745,985	+				+1.4
1,745,993	-				-0.3
1,746,067	-				+0.2
1,746,076	+				+2.5
1,746,086	+				+1.2
1,746,092	+				-0.8
1,746,100	-				+1.1
1,746,110	-				-0.9
1,746,223	+				+0.9
1,746,263	+				+0.2
1,746,265	+				+0.6
1,746,296	+				-0.6
1,746,346	-				-0.8
1,746,404	+		GFF1722	0.12	-2.0
1,746,433	+		GFF1722	0.14	+0.0
1,746,456	+		GFF1722	0.15	-0.4
1,746,464	-		GFF1722	0.16	+0.1
1,746,469	-		GFF1722	0.16	-0.3
1,746,475	+		GFF1722	0.17	+0.8
1,746,499	+		GFF1722	0.18	+1.0
1,746,502	-		GFF1722	0.18	+1.9
1,746,502	-		GFF1722	0.18	-0.1
1,746,512	-		GFF1722	0.19	-0.4
1,746,516	+		GFF1722	0.19	+0.6
1,746,524	-		GFF1722	0.20	-2.0
1,746,524	-		GFF1722	0.20	-0.3
1,746,524	-		GFF1722	0.20	+0.3
1,746,524	-		GFF1722	0.20	-0.6
1,746,551	+		GFF1722	0.22	+1.2
1,746,551	+		GFF1722	0.22	-0.7
1,746,551	+		GFF1722	0.22	+0.3
1,746,551	+		GFF1722	0.22	-0.7
1,746,559	-		GFF1722	0.22	-2.1
1,746,559	-		GFF1722	0.22	+1.1
1,746,559	-		GFF1722	0.22	-0.8
1,746,559	-		GFF1722	0.22	-2.0
1,746,559	-		GFF1722	0.22	+0.5
1,746,559	-		GFF1722	0.22	+1.5
1,746,559	-		GFF1722	0.22	+0.9
1,746,559	-		GFF1722	0.22	+0.6
1,746,559	-		GFF1722	0.22	+0.1
1,746,578	+		GFF1722	0.24	-0.8
1,746,586	-		GFF1722	0.24	-0.9
1,746,629	-		GFF1722	0.27	-0.2
1,746,642	+		GFF1722	0.28	+0.9
1,746,650	-		GFF1722	0.28	+0.2
1,746,650	-		GFF1722	0.28	+0.3
1,746,657	+		GFF1722	0.29	+1.0
1,746,657	+		GFF1722	0.29	-2.2
1,746,665	-		GFF1722	0.29	-0.4
1,746,665	-		GFF1722	0.29	+0.2
1,746,665	-		GFF1722	0.29	+1.3
1,746,665	-		GFF1722	0.29	-0.1
1,746,671	-		GFF1722	0.30	-1.0
1,746,723	+		GFF1722	0.33	+0.5
1,746,723	+		GFF1722	0.33	+0.1
1,746,731	-		GFF1722	0.34	+0.6
1,746,787	+		GFF1722	0.38	-1.5
1,746,960	+		GFF1722	0.49	+1.6
1,746,960	+		GFF1722	0.49	+0.2
1,746,960	+		GFF1722	0.49	-1.2
1,747,002	+		GFF1722	0.52	+0.5
1,747,005	-		GFF1722	0.52	+0.8
1,747,052	+		GFF1722	0.55	-0.8
1,747,066	-		GFF1722	0.56	+1.5
1,747,076	+		GFF1722	0.57	+0.3
1,747,080	+		GFF1722	0.57	-0.7
1,747,099	+		GFF1722	0.58	-0.0
1,747,139	-		GFF1722	0.61	+1.8
1,747,170	+		GFF1722	0.63	-1.0
1,747,170	+		GFF1722	0.63	-0.4
1,747,178	-		GFF1722	0.64	+0.4
1,747,186	-		GFF1722	0.64	-1.0
1,747,188	+		GFF1722	0.64	+0.7
1,747,188	+		GFF1722	0.64	+0.7
1,747,205	+		GFF1722	0.66	+0.6
1,747,215	+		GFF1722	0.66	+2.1
1,747,223	+		GFF1722	0.67	-0.1
1,747,231	-		GFF1722	0.67	-1.0
1,747,231	-		GFF1722	0.67	+0.7
1,747,233	+		GFF1722	0.67	+0.2
1,747,243	+		GFF1722	0.68	+0.3
1,747,251	-		GFF1722	0.69	+1.3
1,747,251	-		GFF1722	0.69	+0.6
1,747,253	+		GFF1722	0.69	-0.1
1,747,258	+		GFF1722	0.69	-2.0
1,747,261	-		GFF1722	0.69	+1.2
1,747,263	+		GFF1722	0.69	+1.5
1,747,263	+		GFF1722	0.69	+0.6
1,747,263	+		GFF1722	0.69	-1.7
1,747,263	+		GFF1722	0.69	+0.9
1,747,271	-		GFF1722	0.70	-0.7
1,747,271	-		GFF1722	0.70	-0.8
1,747,271	-		GFF1722	0.70	-0.5
1,747,297	+		GFF1722	0.72	+0.5
1,747,311	-		GFF1722	0.73	+1.0
1,747,311	-		GFF1722	0.73	-1.0
1,747,324	-		GFF1722	0.73	+1.4
1,747,326	+		GFF1722	0.74	-1.4
1,747,349	-		GFF1722	0.75	-0.8
1,747,416	-		GFF1722	0.80	-1.4
1,747,416	-		GFF1722	0.80	+1.1
1,747,418	+		GFF1722	0.80	+1.1
1,747,426	-		GFF1722	0.80	-0.4
1,747,436	-		GFF1722	0.81	-0.3
1,747,488	+		GFF1722	0.84	-0.1
1,747,496	+		GFF1722	0.85	-0.9
1,747,498	-		GFF1722	0.85	-0.2
1,747,518	-		GFF1722	0.86	-1.8
1,747,523	-		GFF1722	0.87	+1.1
1,747,525	+		GFF1722	0.87	-0.5
1,747,533	+		GFF1722	0.87	+0.4
1,747,533	+		GFF1722	0.87	+1.3
1,747,541	-		GFF1722	0.88	-0.2
1,747,550	-		GFF1722	0.89	-2.1
1,747,555	+		GFF1722	0.89	+0.3
1,747,561	-		GFF1722	0.89	+0.9
1,747,561	-		GFF1722	0.89	+0.2
1,747,569	-		GFF1722	0.90	+1.4
1,747,571	+				+0.6
1,747,609	+				-0.1
1,747,617	-				-0.8
1,747,617	-				+0.6
1,747,617	-				+1.3
1,747,617	-				+1.4
1,747,623	-				-1.0
1,747,633	+				+0.8
1,747,641	-				+0.8
1,747,641	-				-0.6
1,747,641	-				-0.4
1,747,660	-				+1.6
1,747,704	-				+0.6
1,747,714	-				+0.2
1,747,731	-				-0.3
1,747,762	+				-1.3
1,747,762	+				+1.0
1,747,780	-		GFF1723	0.11	-0.2
1,747,788	+		GFF1723	0.13	+2.0
1,747,808	+		GFF1723	0.16	+0.5
1,747,808	+		GFF1723	0.16	-0.2
1,747,809	+		GFF1723	0.16	-0.8
1,747,817	-		GFF1723	0.18	-0.5
1,747,817	-		GFF1723	0.18	-1.0
1,747,818	-		GFF1723	0.18	+0.6
1,747,818	-		GFF1723	0.18	+0.4
1,747,823	-		GFF1723	0.19	-0.6
1,747,826	+		GFF1723	0.20	+0.6
1,747,862	+		GFF1723	0.26	+0.6
1,747,864	+		GFF1723	0.26	-1.4
1,747,870	-		GFF1723	0.27	+0.0
1,747,870	-		GFF1723	0.27	-0.4
1,747,897	-		GFF1723	0.32	+1.2
1,747,935	-		GFF1723	0.39	-0.8
1,747,962	-		GFF1723	0.44	+0.1
1,748,032	+		GFF1723	0.56	-1.0
1,748,040	-		GFF1723	0.57	-1.3
1,748,093	+		GFF1723	0.67	+0.5
1,748,100	+		GFF1723	0.68	-1.9
1,748,100	+		GFF1723	0.68	-1.8
1,748,102	-		GFF1723	0.68	+0.5
1,748,107	+		GFF1723	0.69	+3.3
1,748,107	+		GFF1723	0.69	-1.3
1,748,108	-		GFF1723	0.70	-0.2
1,748,114	-		GFF1723	0.71	-1.4
1,748,114	-		GFF1723	0.71	-0.3
1,748,115	-		GFF1723	0.71	-0.2
1,748,115	-		GFF1723	0.71	+1.4
1,748,115	-		GFF1723	0.71	+0.8
1,748,115	-		GFF1723	0.71	-0.9
1,748,115	-		GFF1723	0.71	-0.1
1,748,115	-		GFF1723	0.71	-0.1
1,748,115	-		GFF1723	0.71	+0.2
1,748,124	-		GFF1723	0.72	-0.1
1,748,124	-		GFF1723	0.72	-1.8
1,748,159	-		GFF1723	0.79	+0.1
1,748,163	-		GFF1723	0.79	-0.1
1,748,164	-		GFF1723	0.79	+1.7
1,748,215	-		GFF1723	0.88	+0.7
1,748,233	-				-0.1
1,748,233	-				+2.2
1,748,239	-				-0.7
1,748,306	+				+0.7
1,748,307	+				-1.3
1,748,307	+				+1.0
1,748,354	-				-0.7
1,748,356	+				-1.3
1,748,366	-				+0.2
1,748,398	-				-2.6
1,748,432	+				-2.1
1,748,432	+				-0.8
1,748,440	-				+0.5
1,748,454	+				-0.3
1,748,454	+				+0.3
1,748,455	-				+0.9
1,748,462	-				-2.4
1,748,462	-				-1.6
1,748,462	-				+0.7
1,748,462	-				-0.7
1,748,462	-				+0.8
1,748,462	-				+0.5
1,748,462	-				-1.7
1,748,466	+				+0.7
1,748,466	+				-1.1
1,748,474	-				+0.6
1,748,474	-				+0.4
1,748,535	+		GFF1724	0.11	-0.0
1,748,535	+		GFF1724	0.11	-2.0
1,748,535	+		GFF1724	0.11	-0.7
1,748,556	-		GFF1724	0.12	+1.6
1,748,564	-		GFF1724	0.13	-0.3
1,748,568	+		GFF1724	0.13	+0.4
1,748,568	+		GFF1724	0.13	-0.2
1,748,595	+		GFF1724	0.14	-0.2
1,748,605	+		GFF1724	0.14	+0.4
1,748,613	-		GFF1724	0.15	-0.7
1,748,613	-		GFF1724	0.15	+1.2
1,748,613	-		GFF1724	0.15	+0.4
1,748,621	-		GFF1724	0.15	+1.5
1,748,633	-		GFF1724	0.16	-0.7
1,748,691	-		GFF1724	0.18	-0.9
1,748,691	-		GFF1724	0.18	+0.2
1,748,691	-		GFF1724	0.18	+0.3
1,748,691	-		GFF1724	0.18	-0.1
1,748,691	-		GFF1724	0.18	+1.1
1,748,718	+		GFF1724	0.19	+0.7