Strain Fitness in Sphingobium sp. HT1-2 around GFF1599

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,624,298	+				-1.6
1,624,299	+				-0.9
1,624,299	+				+0.4
1,624,299	+				+1.2
1,624,299	+				+0.6
1,624,299	+				+0.2
1,624,299	+				+0.6
1,624,299	+				-0.3
1,624,304	+				-0.2
1,624,304	+				-0.1
1,624,304	+				+1.2
1,624,304	+				+0.7
1,624,307	-				-0.9
1,624,307	-				-1.8
1,624,307	-				-0.9
1,624,341	+				+0.1
1,624,378	+				-1.2
1,624,386	-		GFF1597	0.11	+0.1
1,624,428	-		GFF1597	0.21	-1.4
1,624,438	+		GFF1597	0.24	+1.7
1,624,438	+		GFF1597	0.24	-2.6
1,624,438	+		GFF1597	0.24	+0.1
1,624,446	-		GFF1597	0.26	-0.7
1,624,446	-		GFF1597	0.26	-1.2
1,624,446	-		GFF1597	0.26	-0.6
1,624,446	-		GFF1597	0.26	-0.1
1,624,448	+		GFF1597	0.26	-0.5
1,624,451	-		GFF1597	0.27	+0.3
1,624,451	-		GFF1597	0.27	+0.8
1,624,456	-		GFF1597	0.28	-0.5
1,624,456	-		GFF1597	0.28	-0.7
1,624,468	+		GFF1597	0.31	-0.7
1,624,468	+		GFF1597	0.31	-0.1
1,624,473	+		GFF1597	0.32	+0.6
1,624,473	+		GFF1597	0.32	+0.3
1,624,476	-		GFF1597	0.33	+0.9
1,624,476	-		GFF1597	0.33	+0.5
1,624,481	-		GFF1597	0.34	+0.3
1,624,516	+		GFF1597	0.42	-1.4
1,624,521	+		GFF1597	0.44	-0.4
1,624,532	+		GFF1597	0.46	+0.7
1,624,534	+		GFF1597	0.47	+0.1
1,624,539	+		GFF1597	0.48	+1.7
1,624,540	-		GFF1597	0.48	+0.6
1,624,542	-		GFF1597	0.49	+0.7
1,624,545	-		GFF1597	0.49	+2.2
1,624,547	+		GFF1597	0.50	+0.2
1,624,561	-		GFF1597	0.53	-1.9
1,624,572	+		GFF1597	0.56	-0.0
1,624,580	-		GFF1597	0.58	+1.7
1,624,580	-		GFF1597	0.58	-0.4
1,624,580	-		GFF1597	0.58	+0.8
1,624,588	-		GFF1597	0.60	-1.5
1,624,588	-		GFF1597	0.60	-1.8
1,624,597	+		GFF1597	0.62	-0.6
1,624,600	-		GFF1597	0.62	+1.7
1,624,604	+		GFF1597	0.63	-0.0
1,624,610	-		GFF1597	0.65	-2.4
1,624,619	+		GFF1597	0.67	+1.1
1,624,630	+		GFF1597	0.70	+0.6
1,624,630	+		GFF1597	0.70	+1.4
1,624,630	+		GFF1597	0.70	+1.3
1,624,630	+		GFF1597	0.70	-0.8
1,624,630	+		GFF1597	0.70	-1.1
1,624,635	+		GFF1597	0.71	+0.0
1,624,638	-		GFF1597	0.71	+1.3
1,624,638	-		GFF1597	0.71	-0.3
1,624,643	+		GFF1597	0.73	-0.4
1,624,643	+		GFF1597	0.73	+0.0
1,624,651	-		GFF1597	0.75	+0.3
1,624,683	-		GFF1597	0.82	-0.1
1,624,688	-		GFF1597	0.83	-1.4
1,624,719	+				-0.9
1,624,727	-				-0.7
1,624,727	-				-1.3
1,624,727	-				-1.0
1,624,741	-				+0.8
1,624,745	+				-0.1
1,624,747	-				-1.8
1,624,752	+				-0.3
1,624,752	+				-0.4
1,624,775	+				-1.0
1,624,778	-				-1.1
1,624,778	-				+0.2
1,624,816	-		GFF1598	0.12	+0.5
1,624,856	+		GFF1598	0.20	+0.0
1,624,858	-		GFF1598	0.20	-0.9
1,624,893	+		GFF1598	0.27	+0.2
1,624,893	+		GFF1598	0.27	+0.7
1,624,898	+		GFF1598	0.28	+0.3
1,624,898	+		GFF1598	0.28	-1.4
1,624,906	-		GFF1598	0.29	-1.0
1,624,906	-		GFF1598	0.29	-1.1
1,624,911	-		GFF1598	0.30	-1.0
1,624,929	-		GFF1598	0.34	-1.8
1,624,929	-		GFF1598	0.34	-0.8
1,624,929	-		GFF1598	0.34	-0.4
1,624,929	-		GFF1598	0.34	-1.7
1,624,929	-		GFF1598	0.34	+0.1
1,624,936	-		GFF1598	0.35	-0.1
1,624,945	+		GFF1598	0.37	-0.1
1,624,947	-		GFF1598	0.37	+0.5
1,624,965	-		GFF1598	0.41	+1.0
1,624,965	-		GFF1598	0.41	+0.5
1,624,982	+		GFF1598	0.44	-1.1
1,624,994	-		GFF1598	0.47	+0.9
1,625,010	-		GFF1598	0.50	+0.1
1,625,026	-		GFF1598	0.53	-1.4
1,625,040	-		GFF1598	0.55	-1.1
1,625,042	+		GFF1598	0.56	-0.6
1,625,042	+		GFF1598	0.56	+0.0
1,625,066	-		GFF1598	0.60	-1.4
1,625,072	-		GFF1598	0.62	-0.5
1,625,088	+		GFF1598	0.65	-1.9
1,625,090	+		GFF1598	0.65	-1.4
1,625,090	+		GFF1598	0.65	-0.2
1,625,104	+		GFF1598	0.68	-0.6
1,625,112	+		GFF1598	0.69	-1.4
1,625,112	-		GFF1598	0.69	-1.0
1,625,112	-		GFF1598	0.69	-0.6
1,625,115	-		GFF1598	0.70	+0.5
1,625,141	-		GFF1598	0.75	+0.1
1,625,145	+		GFF1598	0.76	+0.3
1,625,153	-		GFF1598	0.77	+0.7
1,625,155	+		GFF1598	0.78	+1.0
1,625,176	+		GFF1598	0.82	-0.9
1,625,178	-		GFF1598	0.82	-1.9
1,625,184	+		GFF1598	0.83	+0.7
1,625,189	+		GFF1598	0.84	+0.7
1,625,192	-		GFF1598	0.85	+0.4
1,625,192	-		GFF1598	0.85	-0.7
1,625,192	-		GFF1598	0.85	-0.8
1,625,192	-		GFF1598	0.85	-1.6
1,625,194	+		GFF1598	0.85	+0.1
1,625,194	+		GFF1598	0.85	+0.7
1,625,200	+		GFF1598	0.86	-0.8
1,625,202	-		GFF1598	0.87	+1.0
1,625,202	-		GFF1598	0.87	-1.8
1,625,228	+				-1.2
1,625,233	+				+0.1
1,625,233	+				+1.1
1,625,236	-				+0.7
1,625,241	-				-1.9
1,625,241	-				-0.2
1,625,241	-				-3.5
1,625,241	-				-1.9
1,625,246	-				-0.7
1,625,272	-				+0.6
1,625,278	+				-0.7
1,625,278	+				+0.1
1,625,286	-				-1.2
1,625,371	+				-0.6
1,625,376	+				-1.3
1,625,376	+				-1.8
1,625,376	+				-0.7
1,625,376	+				+0.1
1,625,383	+				+0.3
1,625,384	-				-0.3
1,625,384	-				-0.7
1,625,384	-				-2.2
1,625,384	-				+0.7
1,625,384	-				-1.0
1,625,384	-				+0.2
1,625,384	-				-0.7
1,625,386	-				+0.3
1,625,391	-				+0.6
1,625,402	-				+0.2
1,625,422	+				+0.9
1,625,499	+		GFF1599	0.12	+0.2
1,625,507	-		GFF1599	0.12	-2.4
1,625,546	+		GFF1599	0.14	-0.2
1,625,546	+		GFF1599	0.14	+0.4
1,625,546	+		GFF1599	0.14	+0.3
1,625,546	-		GFF1599	0.14	+0.7
1,625,551	+		GFF1599	0.14	-0.9
1,625,551	+		GFF1599	0.14	+0.0
1,625,554	-		GFF1599	0.14	+0.5
1,625,554	-		GFF1599	0.14	+0.1
1,625,554	-		GFF1599	0.14	-1.7
1,625,554	-		GFF1599	0.14	-1.2
1,625,554	-		GFF1599	0.14	+1.1
1,625,569	+		GFF1599	0.15	-0.6
1,625,573	-		GFF1599	0.15	-0.5
1,625,573	-		GFF1599	0.15	-1.0
1,625,573	-		GFF1599	0.15	-0.1
1,625,577	-		GFF1599	0.15	-1.3
1,625,578	-		GFF1599	0.15	-2.7
1,625,589	+		GFF1599	0.16	-1.7
1,625,597	-		GFF1599	0.16	+0.0
1,625,607	+		GFF1599	0.17	+0.9
1,625,615	-		GFF1599	0.17	-1.8
1,625,615	-		GFF1599	0.17	-1.3
1,625,615	-		GFF1599	0.17	+0.1
1,625,615	-		GFF1599	0.17	-0.7
1,625,658	+		GFF1599	0.19	-1.3
1,625,665	-		GFF1599	0.20	-0.3
1,625,672	+		GFF1599	0.20	+0.3
1,625,680	-		GFF1599	0.21	+0.2
1,625,699	+		GFF1599	0.21	-0.7
1,625,699	+		GFF1599	0.21	-0.5
1,625,704	+		GFF1599	0.22	-0.9
1,625,705	+		GFF1599	0.22	-1.9
1,625,707	-		GFF1599	0.22	+0.7
1,625,707	-		GFF1599	0.22	+0.0
1,625,707	-		GFF1599	0.22	+1.0
1,625,707	-		GFF1599	0.22	-1.5
1,625,707	-		GFF1599	0.22	-1.5
1,625,712	-		GFF1599	0.22	-0.3
1,625,734	-		GFF1599	0.23	-1.9
1,625,736	+		GFF1599	0.23	-0.9
1,625,762	+		GFF1599	0.25	-1.6
1,625,762	+		GFF1599	0.25	-0.7
1,625,767	+		GFF1599	0.25	-2.0
1,625,767	+		GFF1599	0.25	+1.2
1,625,767	+		GFF1599	0.25	-0.6
1,625,767	+		GFF1599	0.25	-1.3
1,625,767	+		GFF1599	0.25	-2.1
1,625,770	-		GFF1599	0.25	-0.6
1,625,770	-		GFF1599	0.25	-1.1
1,625,770	-		GFF1599	0.25	-2.4
1,625,770	-		GFF1599	0.25	-1.8
1,625,770	-		GFF1599	0.25	-0.6
1,625,775	-		GFF1599	0.25	-0.1
1,625,775	-		GFF1599	0.25	+0.2
1,625,775	-		GFF1599	0.25	-1.5
1,625,798	+		GFF1599	0.26	+0.7
1,625,811	-		GFF1599	0.27	-1.7
1,625,830	+		GFF1599	0.28	-1.4
1,625,830	+		GFF1599	0.28	+1.3
1,625,833	-		GFF1599	0.28	-2.1
1,625,864	-		GFF1599	0.30	-0.5
1,625,870	+		GFF1599	0.30	-0.5
1,625,870	+		GFF1599	0.30	+1.1
1,625,870	+		GFF1599	0.30	-0.3
1,625,870	+		GFF1599	0.30	-1.6
1,625,870	+		GFF1599	0.30	-0.1
1,625,875	+		GFF1599	0.30	+0.3
1,625,880	+		GFF1599	0.30	+0.7
1,625,883	-		GFF1599	0.31	+0.8
1,625,906	+		GFF1599	0.32	-1.6
1,625,924	-		GFF1599	0.33	+0.4
1,625,924	-		GFF1599	0.33	-0.6
1,625,924	-		GFF1599	0.33	+1.1
1,625,924	-		GFF1599	0.33	-0.2
1,625,944	-		GFF1599	0.34	-0.8
1,625,944	-		GFF1599	0.34	-0.7
1,625,946	+		GFF1599	0.34	-1.6
1,625,949	-		GFF1599	0.34	+1.5
1,625,954	-		GFF1599	0.34	-1.0
1,625,973	+		GFF1599	0.35	+0.6
1,625,975	-		GFF1599	0.35	-0.3
1,625,981	-		GFF1599	0.35	-1.1
1,625,981	-		GFF1599	0.35	+2.7
1,625,990	+		GFF1599	0.36	-0.2
1,625,990	+		GFF1599	0.36	-2.5
1,625,990	+		GFF1599	0.36	+0.9
1,625,990	+		GFF1599	0.36	-2.5
1,625,998	-		GFF1599	0.36	-2.0
1,625,998	-		GFF1599	0.36	+1.1
1,625,998	-		GFF1599	0.36	-0.1
1,625,998	-		GFF1599	0.36	+0.9
1,626,000	+		GFF1599	0.36	+1.3
1,626,003	-		GFF1599	0.37	-0.4
1,626,020	+		GFF1599	0.37	+0.3
1,626,030	+		GFF1599	0.38	+0.5
1,626,038	-		GFF1599	0.38	-1.4
1,626,063	+		GFF1599	0.39	-0.3
1,626,071	-		GFF1599	0.40	-0.7
1,626,077	-		GFF1599	0.40	+0.3
1,626,087	-		GFF1599	0.41	-0.9
1,626,112	-		GFF1599	0.42	-1.6
1,626,121	+		GFF1599	0.42	-0.4
1,626,135	+		GFF1599	0.43	+1.1
1,626,135	+		GFF1599	0.43	+0.0
1,626,138	-		GFF1599	0.43	-2.3
1,626,141	+		GFF1599	0.43	-0.7
1,626,143	-		GFF1599	0.43	-0.3
1,626,143	-		GFF1599	0.43	-1.6
1,626,143	-		GFF1599	0.43	+0.0
1,626,146	+		GFF1599	0.44	+1.9
1,626,149	-		GFF1599	0.44	-0.5
1,626,163	-		GFF1599	0.44	-2.1
1,626,169	-		GFF1599	0.45	+0.5
1,626,173	-		GFF1599	0.45	-1.1
1,626,188	-		GFF1599	0.46	+0.6
1,626,190	+		GFF1599	0.46	-0.1
1,626,195	+		GFF1599	0.46	+0.7
1,626,198	-		GFF1599	0.46	+0.2
1,626,208	+		GFF1599	0.47	+0.3
1,626,216	-		GFF1599	0.47	-0.1
1,626,223	+		GFF1599	0.47	+1.2
1,626,235	+		GFF1599	0.48	+0.4
1,626,241	-		GFF1599	0.48	-0.3
1,626,303	+		GFF1599	0.51	-1.1
1,626,315	+		GFF1599	0.52	+0.2
1,626,321	+		GFF1599	0.52	+0.2
1,626,324	-		GFF1599	0.52	+0.3
1,626,324	-		GFF1599	0.52	+0.1
1,626,336	+		GFF1599	0.53	+0.9
1,626,346	+		GFF1599	0.53	-0.6
1,626,370	-		GFF1599	0.55	-0.1
1,626,413	+		GFF1599	0.57	+0.0
1,626,421	-		GFF1599	0.57	+1.2
1,626,421	-		GFF1599	0.57	-0.5
1,626,421	-		GFF1599	0.57	-1.0
1,626,421	-		GFF1599	0.57	+0.6
1,626,432	+		GFF1599	0.58	+0.1
1,626,440	-		GFF1599	0.58	-0.6
1,626,440	-		GFF1599	0.58	+1.1
1,626,490	+		GFF1599	0.61	+0.3
1,626,505	+		GFF1599	0.61	-0.7
1,626,505	+		GFF1599	0.61	+0.6
1,626,505	+		GFF1599	0.61	+1.6
1,626,507	+		GFF1599	0.61	-0.6
1,626,513	-		GFF1599	0.62	-0.8
1,626,513	-		GFF1599	0.62	-2.4
1,626,513	-		GFF1599	0.62	-1.2
1,626,656	+		GFF1599	0.69	-2.1
1,626,767	+		GFF1599	0.74	+0.3
1,626,770	-		GFF1599	0.74	+0.4
1,626,774	+		GFF1599	0.75	+0.5
1,626,776	+		GFF1599	0.75	+0.5
1,626,824	+		GFF1599	0.77	+1.2
1,626,844	+		GFF1599	0.78	+0.8
1,626,846	+		GFF1599	0.78	+0.9
1,626,851	+		GFF1599	0.79	-0.5
1,626,852	-		GFF1599	0.79	+0.1
1,626,856	+		GFF1599	0.79	+1.8
1,626,856	+		GFF1599	0.79	-1.2
1,626,856	+		GFF1599	0.79	+0.7
1,626,856	+		GFF1599	0.79	-0.5
1,626,888	+		GFF1599	0.80	-1.0
1,626,888	+		GFF1599	0.80	-0.3
1,626,893	+		GFF1599	0.81	-0.9
1,626,900	+		GFF1599	0.81	+0.4
1,626,901	-		GFF1599	0.81	-1.8
1,626,901	-		GFF1599	0.81	-0.2
1,626,901	-		GFF1599	0.81	+0.1
1,626,908	-		GFF1599	0.81	-0.3
1,626,916	-		GFF1599	0.82	+1.2
1,626,944	-		GFF1599	0.83	-0.5
1,626,964	+		GFF1599	0.84	-0.0
1,626,974	+		GFF1599	0.85	+0.1
1,626,985	+		GFF1599	0.85	-1.4
1,626,999	-		GFF1599	0.86	+0.0
1,627,057	-		GFF1599	0.89	-1.1
1,627,094	-				-0.3
1,627,109	-				+0.5
1,627,115	+				+0.8
1,627,157	-				-3.1
1,627,189	+				+1.5
1,627,211	+				+0.0
1,627,233	+				-1.7
1,627,247	-				-1.7
1,627,311	+				-2.5
1,627,398	-				+0.1
1,627,432	+				+0.5
1,627,435	-				+0.1
1,627,457	-				+1.0
1,627,469	+				-0.6
1,627,518	-		GFF1600	0.16	-0.6
1,627,549	+		GFF1600	0.22	+1.1
1,627,549	+		GFF1600	0.22	-0.3
1,627,549	+		GFF1600	0.22	+0.1
1,627,549	+		GFF1600	0.22	+0.3
1,627,549	+		GFF1600	0.22	-0.5
1,627,549	+		GFF1600	0.22	-0.3
1,627,549	+		GFF1600	0.22	-1.8
1,627,557	-		GFF1600	0.23	-0.1
1,627,557	-		GFF1600	0.23	-0.2
1,627,557	-		GFF1600	0.23	+1.2
1,627,557	-		GFF1600	0.23	+0.7
1,627,557	-		GFF1600	0.23	-0.2
1,627,557	-		GFF1600	0.23	-0.3
1,627,557	-		GFF1600	0.23	-1.7
1,627,563	+		GFF1600	0.24	-1.4
1,627,563	+		GFF1600	0.24	+0.3
1,627,571	-		GFF1600	0.25	-0.3
1,627,571	-		GFF1600	0.25	-0.6
1,627,571	-		GFF1600	0.25	-0.6
1,627,571	-		GFF1600	0.25	-0.4
1,627,573	+		GFF1600	0.26	-1.3
1,627,577	+		GFF1600	0.26	-0.1
1,627,590	-		GFF1600	0.29	-0.7
1,627,590	-		GFF1600	0.29	+0.2
1,627,590	-		GFF1600	0.29	+0.2
1,627,617	+		GFF1600	0.33	-0.4
1,627,617	+		GFF1600	0.33	-0.1
1,627,622	+		GFF1600	0.34	-0.2
1,627,625	-		GFF1600	0.35	-0.5
1,627,625	-		GFF1600	0.35	+0.3
1,627,625	-		GFF1600	0.35	+0.3
1,627,630	-		GFF1600	0.36	-0.1
1,627,630	-		GFF1600	0.36	-0.4
1,627,649	+		GFF1600	0.39	-0.3
1,627,679	-		GFF1600	0.44	+0.1
1,627,686	+		GFF1600	0.45	+0.2
1,627,686	+		GFF1600	0.45	+0.5
1,627,686	+		GFF1600	0.45	-0.9
1,627,686	+		GFF1600	0.45	-1.4
1,627,686	+		GFF1600	0.45	-0.8
1,627,686	+		GFF1600	0.45	+0.5
1,627,686	+		GFF1600	0.45	-0.5
1,627,694	-		GFF1600	0.47	-0.5
1,627,694	-		GFF1600	0.47	+0.1
1,627,694	-		GFF1600	0.47	+0.4
1,627,694	-		GFF1600	0.47	-0.4
1,627,694	-		GFF1600	0.47	-1.6
1,627,694	-		GFF1600	0.47	+0.9
1,627,694	-		GFF1600	0.47	-0.4
1,627,694	-		GFF1600	0.47	+0.6
1,627,708	-		GFF1600	0.49	-2.2
1,627,735	+		GFF1600	0.54	+0.8
1,627,738	+		GFF1600	0.54	+0.5
1,627,741	-		GFF1600	0.55	+0.3
1,627,746	-		GFF1600	0.56	-0.4
1,627,746	-		GFF1600	0.56	-0.8
1,627,746	-		GFF1600	0.56	+0.2
1,627,748	+		GFF1600	0.56	-2.1
1,627,748	+		GFF1600	0.56	-3.2
1,627,748	+		GFF1600	0.56	-1.5
1,627,748	+		GFF1600	0.56	-0.7
1,627,748	+		GFF1600	0.56	-1.1
1,627,748	+		GFF1600	0.56	+0.7
1,627,748	+		GFF1600	0.56	+0.2
1,627,751	-		GFF1600	0.57	-1.3
1,627,758	+		GFF1600	0.58	-1.0
1,627,766	-		GFF1600	0.59	-0.2
1,627,775	-		GFF1600	0.61	-0.5
1,627,780	-		GFF1600	0.62	-1.6
1,627,796	-		GFF1600	0.64	+0.0
1,627,801	-		GFF1600	0.65	-1.4
1,627,808	+		GFF1600	0.66	-0.4
1,627,812	-		GFF1600	0.67	-0.2
1,627,941	-		GFF1600	0.90	-0.7
1,627,954	+				-2.1
1,627,982	+				-0.4
1,628,012	+				-1.0
1,628,020	-				+0.3