Strain Fitness in Sphingobium sp. HT1-2 around GFF1585

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,612,988	+		GFF1583	0.22	-1.3
1,613,091	+		GFF1583	0.37	-1.5
1,613,198	+		GFF1583	0.53	-1.3
1,613,198	+		GFF1583	0.53	-1.5
1,613,201	-		GFF1583	0.53	-1.4
1,613,282	-		GFF1583	0.65	-0.3
1,613,303	-		GFF1583	0.68	-2.1
1,613,308	-		GFF1583	0.69	-1.3
1,613,309	-		GFF1583	0.69	-1.8
1,613,375	-		GFF1583	0.78	-1.4
1,613,510	+				-0.0
1,613,518	-				-0.6
1,613,520	+				-0.5
1,613,520	+				-0.2
1,613,520	+				-0.2
1,613,520	+				+1.6
1,613,528	-				+0.7
1,613,528	-				-0.5
1,613,532	+				+0.4
1,613,572	+				-0.2
1,613,572	+				-1.1
1,613,573	-				-1.3
1,613,577	+				-2.3
1,613,580	-				+0.2
1,613,580	-				+0.9
1,613,585	-				+0.3
1,613,587	-				+0.5
1,613,602	+				+0.2
1,613,605	+				-0.3
1,613,605	+				+0.1
1,613,612	+				+0.5
1,613,612	+				+0.1
1,613,613	-				-1.6
1,613,613	-				-0.1
1,613,646	+				-1.0
1,613,646	-				+0.5
1,613,651	+				+1.3
1,613,654	-				+1.7
1,613,659	-				-0.8
1,613,659	-				+0.2
1,613,668	+				+0.3
1,613,711	+		GFF1584	0.21	-0.8
1,613,756	-		GFF1584	0.38	-1.7
1,613,775	-		GFF1584	0.45	+0.1
1,613,813	+		GFF1584	0.60	-0.5
1,613,847	+		GFF1584	0.72	-0.3
1,613,883	+		GFF1584	0.86	+0.7
1,613,891	-		GFF1584	0.89	+0.3
1,613,898	+				-0.3
1,613,906	-				+0.2
1,613,906	-				-1.4
1,613,906	-				+1.2
1,613,911	-				+0.5
1,613,915	+				-0.3
1,613,915	+				-1.7
1,613,923	-				-1.0
1,613,923	-				-0.3
1,613,939	+				-1.4
1,613,939	+				+0.6
1,613,944	+				-2.3
1,613,947	-				-2.3
1,613,952	-				-0.3
1,613,982	-				-1.1
1,613,984	+				-0.7
1,613,987	-				+0.0
1,613,989	+				-0.5
1,613,989	+				-0.8
1,613,998	+				-0.3
1,614,019	-				+0.0
1,614,026	+				-1.0
1,614,034	+				+0.7
1,614,034	+				+0.3
1,614,034	+				-0.1
1,614,034	+				-0.4
1,614,034	+				-0.4
1,614,034	+				-0.8
1,614,034	+				+1.8
1,614,034	+				+0.2
1,614,034	+				+0.5
1,614,042	-				-1.0
1,614,042	-				-1.1
1,614,042	-				-1.5
1,614,042	-				-2.3
1,614,042	-				-1.0
1,614,042	-				-1.4
1,614,042	-				+0.3
1,614,042	-				-1.1
1,614,042	-				-0.1
1,614,042	-				-0.3
1,614,051	+				-0.9
1,614,051	+				+1.1
1,614,051	+				-0.6
1,614,051	+				-1.1
1,614,056	+				-2.5
1,614,056	+				-1.1
1,614,059	-				+0.0
1,614,064	-				-0.2
1,614,079	+				+0.7
1,614,079	+				+0.1
1,614,079	+				-1.0
1,614,079	+				+0.0
1,614,079	+				-0.3
1,614,087	-				-1.8
1,614,087	-				+0.6
1,614,087	-				-1.0
1,614,087	-				+0.2
1,614,088	-				-1.1
1,614,123	+		GFF1585	0.13	-1.9
1,614,125	+		GFF1585	0.13	-1.0
1,614,127	+		GFF1585	0.13	+0.3
1,614,127	+		GFF1585	0.13	-0.4
1,614,127	+		GFF1585	0.13	-0.4
1,614,127	+		GFF1585	0.13	+0.7
1,614,128	+		GFF1585	0.13	-0.6
1,614,135	-		GFF1585	0.14	-0.3
1,614,135	-		GFF1585	0.14	+0.2
1,614,135	-		GFF1585	0.14	-0.5
1,614,135	-		GFF1585	0.14	+0.3
1,614,137	+		GFF1585	0.14	-0.3
1,614,140	-		GFF1585	0.14	+0.5
1,614,140	-		GFF1585	0.14	+0.5
1,614,140	-		GFF1585	0.14	-1.5
1,614,159	+		GFF1585	0.16	-2.6
1,614,167	-		GFF1585	0.17	-1.0
1,614,169	+		GFF1585	0.17	-0.4
1,614,187	+		GFF1585	0.18	-1.3
1,614,187	+		GFF1585	0.18	-0.8
1,614,187	+		GFF1585	0.18	+0.9
1,614,187	+		GFF1585	0.18	-1.1
1,614,187	+		GFF1585	0.18	+0.5
1,614,187	+		GFF1585	0.18	-1.3
1,614,187	+		GFF1585	0.18	+0.5
1,614,187	+		GFF1585	0.18	-0.4
1,614,187	+		GFF1585	0.18	+1.3
1,614,187	+		GFF1585	0.18	+1.0
1,614,187	+		GFF1585	0.18	-2.6
1,614,187	+		GFF1585	0.18	+0.1
1,614,187	+		GFF1585	0.18	+0.8
1,614,195	-		GFF1585	0.19	-1.6
1,614,195	-		GFF1585	0.19	-0.1
1,614,195	-		GFF1585	0.19	+0.6
1,614,195	-		GFF1585	0.19	+1.0
1,614,195	-		GFF1585	0.19	-0.6
1,614,195	-		GFF1585	0.19	-1.4
1,614,195	-		GFF1585	0.19	-0.5
1,614,195	-		GFF1585	0.19	-0.4
1,614,195	-		GFF1585	0.19	-0.2
1,614,195	-		GFF1585	0.19	-1.5
1,614,195	-		GFF1585	0.19	-0.8
1,614,197	+		GFF1585	0.19	-0.1
1,614,227	-		GFF1585	0.22	-0.3
1,614,241	-		GFF1585	0.23	-1.1
1,614,241	-		GFF1585	0.23	+0.2
1,614,291	-		GFF1585	0.28	-2.0
1,614,298	-		GFF1585	0.28	-0.4
1,614,309	-		GFF1585	0.29	+0.5
1,614,324	+		GFF1585	0.30	-1.7
1,614,327	-		GFF1585	0.31	-2.0
1,614,342	+		GFF1585	0.32	-0.7
1,614,351	-		GFF1585	0.33	+1.1
1,614,357	+		GFF1585	0.33	-0.3
1,614,357	+		GFF1585	0.33	+1.4
1,614,357	+		GFF1585	0.33	-1.1
1,614,357	+		GFF1585	0.33	+0.2
1,614,357	+		GFF1585	0.33	-0.2
1,614,357	+		GFF1585	0.33	+1.7
1,614,357	+		GFF1585	0.33	+0.1
1,614,357	+		GFF1585	0.33	+0.5
1,614,357	+		GFF1585	0.33	-1.8
1,614,357	+		GFF1585	0.33	+0.2
1,614,357	+		GFF1585	0.33	+0.3
1,614,357	+		GFF1585	0.33	-0.9
1,614,357	+		GFF1585	0.33	-0.8
1,614,357	+		GFF1585	0.33	-0.9
1,614,357	+		GFF1585	0.33	-0.4
1,614,357	+		GFF1585	0.33	+0.7
1,614,357	+		GFF1585	0.33	+0.1
1,614,357	+		GFF1585	0.33	+1.6
1,614,357	+		GFF1585	0.33	+0.0
1,614,357	+		GFF1585	0.33	-0.5
1,614,357	+		GFF1585	0.33	+0.7
1,614,357	+		GFF1585	0.33	+0.9
1,614,357	+		GFF1585	0.33	-1.0
1,614,357	+		GFF1585	0.33	-0.1
1,614,365	-		GFF1585	0.34	-1.8
1,614,365	-		GFF1585	0.34	-0.6
1,614,365	-		GFF1585	0.34	+0.4
1,614,365	-		GFF1585	0.34	-0.6
1,614,365	-		GFF1585	0.34	+0.7
1,614,365	-		GFF1585	0.34	+0.4
1,614,365	-		GFF1585	0.34	+0.0
1,614,365	-		GFF1585	0.34	+0.5
1,614,365	-		GFF1585	0.34	-1.5
1,614,365	-		GFF1585	0.34	-1.4
1,614,365	-		GFF1585	0.34	+0.7
1,614,365	-		GFF1585	0.34	-1.9
1,614,365	-		GFF1585	0.34	+0.9
1,614,365	-		GFF1585	0.34	-0.5
1,614,365	-		GFF1585	0.34	-0.7
1,614,365	-		GFF1585	0.34	-0.5
1,614,365	-		GFF1585	0.34	+0.4
1,614,365	-		GFF1585	0.34	+0.9
1,614,365	-		GFF1585	0.34	-0.1
1,614,365	-		GFF1585	0.34	-0.5
1,614,365	-		GFF1585	0.34	+1.5
1,614,365	-		GFF1585	0.34	-2.1
1,614,365	-		GFF1585	0.34	+0.7
1,614,367	+		GFF1585	0.34	+1.4
1,614,403	+		GFF1585	0.37	+0.5
1,614,403	+		GFF1585	0.37	+0.2
1,614,403	+		GFF1585	0.37	+0.7
1,614,403	+		GFF1585	0.37	-1.3
1,614,403	+		GFF1585	0.37	-1.0
1,614,411	-		GFF1585	0.38	-1.1
1,614,411	-		GFF1585	0.38	-0.8
1,614,411	-		GFF1585	0.38	+0.0
1,614,411	-		GFF1585	0.38	+1.9
1,614,411	-		GFF1585	0.38	-0.6
1,614,437	+		GFF1585	0.40	+0.5
1,614,445	-		GFF1585	0.41	-0.6
1,614,445	-		GFF1585	0.41	-0.3
1,614,446	+		GFF1585	0.41	-1.4
1,614,446	+		GFF1585	0.41	+2.1
1,614,446	+		GFF1585	0.41	-0.8
1,614,447	+		GFF1585	0.41	-0.5
1,614,451	+		GFF1585	0.42	+0.9
1,614,455	-		GFF1585	0.42	-0.9
1,614,455	-		GFF1585	0.42	-0.4
1,614,455	-		GFF1585	0.42	+0.7
1,614,466	+		GFF1585	0.43	-0.1
1,614,523	-		GFF1585	0.48	-0.4
1,614,523	-		GFF1585	0.48	+0.4
1,614,528	-		GFF1585	0.48	-0.6
1,614,569	+		GFF1585	0.52	+0.0
1,614,577	-		GFF1585	0.53	+1.2
1,614,671	-		GFF1585	0.61	-1.9
1,614,674	+		GFF1585	0.61	-0.5
1,614,682	-		GFF1585	0.62	+0.3
1,614,690	+		GFF1585	0.63	+0.6
1,614,690	+		GFF1585	0.63	-0.4
1,614,690	+		GFF1585	0.63	-0.8
1,614,690	+		GFF1585	0.63	-0.9
1,614,690	+		GFF1585	0.63	+0.3
1,614,695	+		GFF1585	0.63	+0.8
1,614,695	+		GFF1585	0.63	+0.2
1,614,695	+		GFF1585	0.63	-1.4
1,614,695	+		GFF1585	0.63	-0.1
1,614,695	+		GFF1585	0.63	-0.6
1,614,698	-		GFF1585	0.63	-1.1
1,614,698	-		GFF1585	0.63	-0.3
1,614,698	-		GFF1585	0.63	-0.3
1,614,703	-		GFF1585	0.64	-0.8
1,614,703	-		GFF1585	0.64	-0.7
1,614,708	-		GFF1585	0.64	+1.5
1,614,718	-		GFF1585	0.65	-3.5
1,614,721	+		GFF1585	0.65	-0.3
1,614,749	+		GFF1585	0.68	-0.6
1,614,749	+		GFF1585	0.68	-1.5
1,614,762	+		GFF1585	0.69	-1.4
1,614,762	+		GFF1585	0.69	+0.1
1,614,770	-		GFF1585	0.70	-1.1
1,614,775	-		GFF1585	0.70	+1.2
1,614,775	-		GFF1585	0.70	-1.1
1,614,775	-		GFF1585	0.70	-1.3
1,614,776	+		GFF1585	0.70	-0.3
1,614,784	-		GFF1585	0.71	+0.2
1,614,785	-		GFF1585	0.71	-0.3
1,614,794	-		GFF1585	0.72	+0.2
1,614,797	+		GFF1585	0.72	+0.2
1,614,805	-		GFF1585	0.73	+0.2
1,614,805	-		GFF1585	0.73	-0.6
1,614,805	-		GFF1585	0.73	+1.2
1,614,809	+		GFF1585	0.73	-0.5
1,614,809	+		GFF1585	0.73	+0.1
1,614,817	-		GFF1585	0.74	-0.2
1,614,841	+		GFF1585	0.76	-1.0
1,614,868	+		GFF1585	0.78	-0.2
1,614,876	-		GFF1585	0.79	-1.6
1,614,896	+		GFF1585	0.81	+1.1
1,614,896	+		GFF1585	0.81	-0.6
1,614,942	-		GFF1585	0.85	-0.4
1,614,950	-		GFF1585	0.85	-0.7
1,614,970	+		GFF1585	0.87	-1.2
1,614,971	+		GFF1585	0.87	+0.5
1,614,979	-		GFF1585	0.88	+0.4
1,614,991	-		GFF1585	0.89	+0.7
1,615,015	-				+0.7
1,615,021	-				-0.5
1,615,043	+				-0.7
1,615,098	-				-1.7
1,615,133	+				+0.2
1,615,142	+				+0.0
1,615,142	+				+0.4
1,615,154	+				+0.4
1,615,237	+				-0.3
1,615,351	-				+1.0
1,615,408	+				-0.5
1,615,408	+				-0.3
1,615,408	+				-0.7
1,615,416	-				-1.6
1,615,416	-				+0.0
1,615,432	+				-0.5
1,615,451	+				-1.1
1,615,451	-				-0.8
1,615,457	+				+0.1
1,615,457	+				-0.3
1,615,457	+				-0.3
1,615,459	-				-0.9
1,615,459	-				-1.2
1,615,459	-				-0.5
1,615,459	-				+2.1
1,615,459	-				+1.4
1,615,459	-				-2.3
1,615,465	-		GFF1587	0.11	+0.9
1,615,465	-		GFF1587	0.11	-0.3
1,615,481	+		GFF1587	0.16	-2.6
1,615,481	+		GFF1587	0.16	+0.1
1,615,493	+		GFF1587	0.19	+0.6
1,615,493	+		GFF1587	0.19	+0.2
1,615,493	+		GFF1587	0.19	-0.5
1,615,553	+		GFF1587	0.35	+1.6
1,615,619	-		GFF1587	0.52	+0.2
1,615,627	+		GFF1587	0.54	+0.1
1,615,634	-		GFF1587	0.56	+0.5
1,615,635	-		GFF1587	0.56	+0.9
1,615,635	-		GFF1587	0.56	+0.3
1,615,635	-		GFF1587	0.56	-0.3
1,615,665	-		GFF1587	0.64	-0.8
1,615,711	-		GFF1587	0.76	+0.1
1,615,738	-		GFF1587	0.84	-1.9
1,615,765	+				+0.2
1,615,765	+				-1.7
1,615,770	+				-1.5
1,615,770	+				-0.1
1,615,773	-				-0.3
1,615,773	-				-0.8
1,615,778	-				+0.6
1,615,803	+				-1.1
1,615,816	-		GFF1588	0.10	+0.9
1,615,836	-		GFF1588	0.17	+0.5
1,615,836	-		GFF1588	0.17	+0.1
1,615,840	+		GFF1588	0.18	-1.7
1,615,850	-		GFF1588	0.21	-0.7
1,615,852	+		GFF1588	0.22	+0.2
1,615,860	-		GFF1588	0.25	+0.8
1,615,860	-		GFF1588	0.25	-0.2
1,615,860	-		GFF1588	0.25	+0.5
1,615,939	-		GFF1588	0.50	+0.7
1,615,952	-		GFF1588	0.54	-1.7
1,615,954	-		GFF1588	0.55	-0.1
1,615,954	-		GFF1588	0.55	-0.9
1,615,995	-		GFF1588	0.68	+0.5
1,616,005	+		GFF1588	0.72	+0.5
1,616,026	-		GFF1588	0.78	-0.1
1,616,026	-		GFF1588	0.78	+0.2
1,616,042	-		GFF1588	0.83	+0.3
1,616,065	-				+0.2
1,616,065	-				+1.2
1,616,065	-				+0.4
1,616,074	-				-0.4
1,616,081	-				+0.3
1,616,081	-				-2.7