Strain Fitness in Sphingobium sp. HT1-2 around GFF1552

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,583,707	-		GFF1550	0.82	-1.9
1,583,719	-		GFF1550	0.83	+0.7
1,583,729	+		GFF1550	0.84	+0.1
1,583,729	+		GFF1550	0.84	-0.1
1,583,729	+		GFF1550	0.84	-0.9
1,583,734	+		GFF1550	0.84	-0.1
1,583,737	-		GFF1550	0.84	-0.5
1,583,763	-		GFF1550	0.86	-0.0
1,583,777	-		GFF1550	0.87	+0.5
1,583,778	-		GFF1550	0.87	-0.5
1,583,782	+		GFF1550	0.87	+0.9
1,583,782	+		GFF1550	0.87	+0.7
1,583,783	-		GFF1550	0.87	-0.8
1,583,785	-		GFF1550	0.87	-2.4
1,583,785	-		GFF1550	0.87	+1.4
1,583,785	-		GFF1550	0.87	-0.1
1,583,819	+		GFF1550	0.90	-1.1
1,583,835	+				+0.6
1,583,859	-				+0.5
1,583,886	+				+1.1
1,583,886	+				-0.4
1,583,893	-				+0.7
1,583,894	-				+0.2
1,583,894	-				-0.2
1,583,894	-				-0.3
1,583,907	-				-1.0
1,583,917	+				+1.1
1,583,917	+				-0.3
1,583,919	-				-2.1
1,583,921	+				-1.9
1,583,921	+				-1.6
1,583,925	-				-1.1
1,583,925	-				+1.4
1,583,929	-				+1.3
1,583,930	-				+1.1
1,583,930	-				+0.9
1,583,938	+				-2.7
1,583,964	-				+0.6
1,583,977	+				+1.3
1,584,027	-				+0.0
1,584,055	-				+0.0
1,584,064	+		GFF1551	0.11	-0.8
1,584,065	+		GFF1551	0.11	-2.0
1,584,072	-		GFF1551	0.12	+1.1
1,584,072	-		GFF1551	0.12	+1.0
1,584,077	+		GFF1551	0.13	-2.4
1,584,085	-		GFF1551	0.14	-1.5
1,584,087	+		GFF1551	0.14	-0.2
1,584,095	-		GFF1551	0.15	+1.4
1,584,105	+		GFF1551	0.17	-1.2
1,584,137	-		GFF1551	0.21	+0.2
1,584,153	-		GFF1551	0.24	-0.8
1,584,155	+		GFF1551	0.24	-1.7
1,584,155	+		GFF1551	0.24	+0.7
1,584,163	-		GFF1551	0.25	-1.8
1,584,186	+		GFF1551	0.28	-0.3
1,584,188	-		GFF1551	0.28	-1.2
1,584,192	+		GFF1551	0.29	-1.4
1,584,208	+		GFF1551	0.31	+1.0
1,584,240	-		GFF1551	0.36	-2.3
1,584,268	+		GFF1551	0.39	-1.2
1,584,269	+		GFF1551	0.40	-1.4
1,584,269	+		GFF1551	0.40	-0.1
1,584,269	+		GFF1551	0.40	-0.1
1,584,269	+		GFF1551	0.40	+0.7
1,584,276	-		GFF1551	0.41	+0.1
1,584,277	-		GFF1551	0.41	-1.5
1,584,277	-		GFF1551	0.41	-0.6
1,584,277	-		GFF1551	0.41	+0.9
1,584,277	-		GFF1551	0.41	-0.0
1,584,277	-		GFF1551	0.41	-0.6
1,584,277	-		GFF1551	0.41	-0.1
1,584,277	-		GFF1551	0.41	-2.3
1,584,283	+		GFF1551	0.41	-0.9
1,584,300	+		GFF1551	0.44	-1.3
1,584,300	+		GFF1551	0.44	-1.3
1,584,308	-		GFF1551	0.45	+0.6
1,584,313	-		GFF1551	0.46	+0.6
1,584,315	+		GFF1551	0.46	-0.5
1,584,315	+		GFF1551	0.46	+0.6
1,584,315	+		GFF1551	0.46	+0.9
1,584,323	-		GFF1551	0.47	-0.3
1,584,324	-		GFF1551	0.47	-0.3
1,584,324	-		GFF1551	0.47	-0.5
1,584,339	+		GFF1551	0.49	-1.5
1,584,360	+		GFF1551	0.52	-0.1
1,584,368	-		GFF1551	0.53	-1.0
1,584,368	-		GFF1551	0.53	-0.4
1,584,379	-		GFF1551	0.55	-1.6
1,584,380	+		GFF1551	0.55	-2.3
1,584,383	-		GFF1551	0.55	+0.4
1,584,383	-		GFF1551	0.55	+0.6
1,584,383	-		GFF1551	0.55	-1.3
1,584,384	+		GFF1551	0.55	-0.7
1,584,385	+		GFF1551	0.56	+0.1
1,584,386	+		GFF1551	0.56	+2.2
1,584,388	-		GFF1551	0.56	+0.3
1,584,389	-		GFF1551	0.56	-0.1
1,584,398	+		GFF1551	0.57	+0.3
1,584,398	+		GFF1551	0.57	+0.7
1,584,398	+		GFF1551	0.57	-0.2
1,584,431	-		GFF1551	0.62	-1.7
1,584,431	-		GFF1551	0.62	-0.4
1,584,431	-		GFF1551	0.62	-0.1
1,584,448	+		GFF1551	0.64	-1.7
1,584,448	+		GFF1551	0.64	+1.3
1,584,464	+		GFF1551	0.67	+0.3
1,584,472	-		GFF1551	0.68	-1.3
1,584,472	-		GFF1551	0.68	-0.5
1,584,472	-		GFF1551	0.68	+0.4
1,584,481	-		GFF1551	0.69	-0.6
1,584,481	-		GFF1551	0.69	+0.4
1,584,482	-		GFF1551	0.69	-0.1
1,584,529	+		GFF1551	0.76	+0.6
1,584,554	+		GFF1551	0.79	-2.6
1,584,562	-		GFF1551	0.80	-1.1
1,584,562	-		GFF1551	0.80	-1.8
1,584,562	-		GFF1551	0.80	-0.9
1,584,580	+		GFF1551	0.83	+0.5
1,584,580	-		GFF1551	0.83	-0.6
1,584,590	-		GFF1551	0.84	-1.5
1,584,599	+		GFF1551	0.85	-1.9
1,584,599	+		GFF1551	0.85	-0.1
1,584,606	-		GFF1551	0.86	+0.2
1,584,607	-		GFF1551	0.86	-1.7
1,584,670	+				-0.5
1,584,670	+				-0.5
1,584,670	+				-1.5
1,584,675	+				+1.1
1,584,678	-				-1.8
1,584,678	-				+0.5
1,584,678	-				+0.3
1,584,678	-				-0.6
1,584,678	-				-0.2
1,584,678	-				+0.2
1,584,678	-				-1.3
1,584,679	-				-0.4
1,584,682	+				+0.8
1,584,682	+				-1.4
1,584,682	+				-3.6
1,584,682	+				-1.0
1,584,682	+				-1.2
1,584,687	+				+0.3
1,584,687	+				+1.7
1,584,694	+				-2.6
1,584,694	+				-0.9
1,584,695	-				+0.0
1,584,695	-				-0.1
1,584,695	-				-0.1
1,584,700	+				+0.5
1,584,718	+				+1.1
1,584,718	+				+1.1
1,584,718	-				+0.1
1,584,718	-				-1.9
1,584,725	-				+1.6
1,584,763	+				-0.2
1,584,774	-				+1.6
1,584,782	-				+0.7
1,584,811	+				+0.5
1,584,812	-				-2.7
1,584,814	+				-0.3
1,584,822	-				-1.9
1,584,822	-				+0.6
1,584,824	+				+0.1
1,584,824	+				+0.4
1,584,824	+				-0.7
1,584,824	+				-1.6
1,584,824	+				-0.7
1,584,824	+				-0.8
1,584,832	-		GFF1552	0.11	-1.8
1,584,832	-		GFF1552	0.11	-1.0
1,584,832	-		GFF1552	0.11	-1.8
1,584,832	-		GFF1552	0.11	-2.6
1,584,857	+		GFF1552	0.13	-3.4
1,584,857	+		GFF1552	0.13	-0.8
1,584,857	+		GFF1552	0.13	+0.3
1,584,857	+		GFF1552	0.13	+0.5
1,584,857	+		GFF1552	0.13	-0.5
1,584,865	-		GFF1552	0.13	-0.1
1,584,865	-		GFF1552	0.13	-0.3
1,584,897	+		GFF1552	0.16	+0.7
1,584,903	+		GFF1552	0.16	-0.7
1,584,905	-		GFF1552	0.17	-1.1
1,584,905	-		GFF1552	0.17	+0.7
1,584,905	-		GFF1552	0.17	-0.3
1,584,911	-		GFF1552	0.17	+0.7
1,584,949	+		GFF1552	0.20	-0.4
1,584,949	+		GFF1552	0.20	-0.4
1,584,957	-		GFF1552	0.21	-1.2
1,584,962	-		GFF1552	0.21	-0.8
1,584,966	+		GFF1552	0.22	+0.6
1,584,977	+		GFF1552	0.23	-0.2
1,584,983	-		GFF1552	0.23	+1.7
1,584,983	-		GFF1552	0.23	+1.1
1,585,008	+		GFF1552	0.25	-0.6
1,585,038	+		GFF1552	0.28	+0.1
1,585,046	-		GFF1552	0.28	-0.3
1,585,061	+		GFF1552	0.30	+0.5
1,585,071	+		GFF1552	0.30	-0.3
1,585,077	+		GFF1552	0.31	+1.1
1,585,079	-		GFF1552	0.31	-0.6
1,585,089	+		GFF1552	0.32	-0.0
1,585,094	+		GFF1552	0.32	+0.3
1,585,094	+		GFF1552	0.32	-1.1
1,585,094	+		GFF1552	0.32	-0.7
1,585,094	+		GFF1552	0.32	-0.3
1,585,094	+		GFF1552	0.32	+0.8
1,585,094	+		GFF1552	0.32	+0.7
1,585,096	+		GFF1552	0.32	-1.8
1,585,097	-		GFF1552	0.33	+0.6
1,585,097	-		GFF1552	0.33	-1.3
1,585,097	-		GFF1552	0.33	+0.4
1,585,102	-		GFF1552	0.33	+0.4
1,585,102	-		GFF1552	0.33	-0.4
1,585,137	+		GFF1552	0.36	+0.9
1,585,168	+		GFF1552	0.38	-1.3
1,585,168	+		GFF1552	0.38	+0.7
1,585,174	-		GFF1552	0.39	+0.0
1,585,176	+		GFF1552	0.39	+0.7
1,585,176	-		GFF1552	0.39	-0.8
1,585,176	-		GFF1552	0.39	-0.5
1,585,180	+		GFF1552	0.39	-0.8
1,585,180	+		GFF1552	0.39	+1.0
1,585,188	-		GFF1552	0.40	-2.4
1,585,188	-		GFF1552	0.40	-1.1
1,585,190	+		GFF1552	0.40	-1.6
1,585,190	+		GFF1552	0.40	+1.0
1,585,198	+		GFF1552	0.41	+0.6
1,585,198	-		GFF1552	0.41	-1.3
1,585,198	-		GFF1552	0.41	-1.1
1,585,226	+		GFF1552	0.43	-1.4
1,585,226	+		GFF1552	0.43	+0.5
1,585,226	+		GFF1552	0.43	+0.8
1,585,234	-		GFF1552	0.44	-0.1
1,585,234	-		GFF1552	0.44	+0.4
1,585,234	-		GFF1552	0.44	+0.5
1,585,234	-		GFF1552	0.44	-0.1
1,585,240	+		GFF1552	0.44	-1.7
1,585,240	+		GFF1552	0.44	-0.5
1,585,240	+		GFF1552	0.44	-0.2
1,585,241	-		GFF1552	0.44	+0.1
1,585,243	+		GFF1552	0.45	+1.2
1,585,243	+		GFF1552	0.45	+0.3
1,585,248	-		GFF1552	0.45	-0.1
1,585,248	-		GFF1552	0.45	+0.1
1,585,251	-		GFF1552	0.45	-0.7
1,585,255	-		GFF1552	0.46	-0.9
1,585,255	-		GFF1552	0.46	-1.5
1,585,256	-		GFF1552	0.46	-2.1
1,585,267	-		GFF1552	0.47	-0.7
1,585,277	+		GFF1552	0.47	-0.7
1,585,295	+		GFF1552	0.49	+0.7
1,585,303	-		GFF1552	0.50	+0.6
1,585,303	-		GFF1552	0.50	+1.0
1,585,321	+		GFF1552	0.51	-0.4
1,585,321	+		GFF1552	0.51	+1.6
1,585,324	-		GFF1552	0.51	+0.0
1,585,329	-		GFF1552	0.52	+0.7
1,585,359	+		GFF1552	0.54	-1.7
1,585,364	+		GFF1552	0.55	+1.3
1,585,364	+		GFF1552	0.55	-0.3
1,585,364	+		GFF1552	0.55	+0.5
1,585,372	-		GFF1552	0.55	+0.3
1,585,372	-		GFF1552	0.55	+0.3
1,585,386	+		GFF1552	0.56	-0.0
1,585,386	+		GFF1552	0.56	-0.1
1,585,386	+		GFF1552	0.56	-0.5
1,585,386	+		GFF1552	0.56	+0.2
1,585,386	+		GFF1552	0.56	-0.7
1,585,386	+		GFF1552	0.56	+0.1
1,585,386	+		GFF1552	0.56	+0.0
1,585,386	+		GFF1552	0.56	+0.3
1,585,386	+		GFF1552	0.56	-0.3
1,585,386	+		GFF1552	0.56	+0.3
1,585,386	+		GFF1552	0.56	-2.2
1,585,386	+		GFF1552	0.56	-0.4
1,585,386	+		GFF1552	0.56	-1.8
1,585,386	+		GFF1552	0.56	-0.1
1,585,386	+		GFF1552	0.56	+0.2
1,585,386	+		GFF1552	0.56	+0.9
1,585,386	+		GFF1552	0.56	-0.6
1,585,386	+		GFF1552	0.56	+0.7
1,585,386	+		GFF1552	0.56	-1.6
1,585,386	+		GFF1552	0.56	-0.9
1,585,386	+		GFF1552	0.56	-0.8
1,585,387	+		GFF1552	0.57	+0.4
1,585,394	-		GFF1552	0.57	-0.2
1,585,394	-		GFF1552	0.57	+0.0
1,585,394	-		GFF1552	0.57	-1.3
1,585,394	-		GFF1552	0.57	-0.3
1,585,394	-		GFF1552	0.57	+0.1
1,585,394	-		GFF1552	0.57	+1.3
1,585,394	-		GFF1552	0.57	-1.9
1,585,394	-		GFF1552	0.57	-1.7
1,585,394	-		GFF1552	0.57	+1.1
1,585,394	-		GFF1552	0.57	+0.3
1,585,394	-		GFF1552	0.57	-0.6
1,585,394	-		GFF1552	0.57	-0.6
1,585,394	-		GFF1552	0.57	-0.1
1,585,394	-		GFF1552	0.57	+0.1
1,585,404	+		GFF1552	0.58	-2.1
1,585,404	+		GFF1552	0.58	+0.0
1,585,404	+		GFF1552	0.58	-1.9
1,585,404	+		GFF1552	0.58	+0.4
1,585,404	+		GFF1552	0.58	-1.0
1,585,404	+		GFF1552	0.58	-1.6
1,585,409	+		GFF1552	0.58	-0.6
1,585,409	+		GFF1552	0.58	-0.6
1,585,412	-		GFF1552	0.59	+0.7
1,585,412	-		GFF1552	0.59	-0.4
1,585,412	-		GFF1552	0.59	-0.9
1,585,412	-		GFF1552	0.59	-0.9
1,585,412	-		GFF1552	0.59	+0.4
1,585,412	-		GFF1552	0.59	-1.2
1,585,412	-		GFF1552	0.59	-0.1
1,585,412	-		GFF1552	0.59	-1.3
1,585,412	-		GFF1552	0.59	+2.2
1,585,414	+		GFF1552	0.59	+0.7
1,585,414	+		GFF1552	0.59	+2.1
1,585,414	+		GFF1552	0.59	-0.7
1,585,414	+		GFF1552	0.59	-0.4
1,585,414	+		GFF1552	0.59	-0.3
1,585,414	+		GFF1552	0.59	-0.5
1,585,414	+		GFF1552	0.59	-0.6
1,585,422	-		GFF1552	0.59	-0.1
1,585,422	-		GFF1552	0.59	-0.1
1,585,422	-		GFF1552	0.59	+0.0
1,585,422	-		GFF1552	0.59	-0.7
1,585,453	-		GFF1552	0.62	+0.4
1,585,453	-		GFF1552	0.62	-2.0
1,585,488	+		GFF1552	0.65	+1.1
1,585,498	+		GFF1552	0.66	-1.0
1,585,506	-		GFF1552	0.66	+1.7
1,585,511	-		GFF1552	0.67	-0.2
1,585,512	+		GFF1552	0.67	-1.4
1,585,516	-		GFF1552	0.67	-0.5
1,585,519	+		GFF1552	0.67	-1.1
1,585,519	+		GFF1552	0.67	+0.4
1,585,519	+		GFF1552	0.67	+0.3
1,585,522	-		GFF1552	0.68	+0.7
1,585,522	-		GFF1552	0.68	-0.2
1,585,525	+		GFF1552	0.68	-1.4
1,585,527	-		GFF1552	0.68	-0.9
1,585,527	-		GFF1552	0.68	-0.1
1,585,527	-		GFF1552	0.68	-0.9
1,585,554	+		GFF1552	0.70	-0.6
1,585,558	+		GFF1552	0.71	+0.6
1,585,562	-		GFF1552	0.71	-0.4
1,585,600	-		GFF1552	0.74	-1.4
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1,585,711	-		GFF1552	0.83	-2.3
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1,585,750	-		GFF1552	0.87	-1.6
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1,585,844	+				+0.2
1,585,850	-				+0.3
1,585,875	+				-1.4
1,585,876	+				-0.4
1,585,876	+				+0.1
1,585,876	+				-1.1
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1,585,876	+				+1.0
1,585,876	+				-1.2
1,585,876	+				+0.8
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1,585,884	-				-0.8
1,585,884	-				-1.8
1,585,888	-				+0.2
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1,585,946	+				+1.0
1,585,946	+				+0.5
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1,585,954	-				-1.8
1,585,954	-				+0.9
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1,585,963	+				-0.1
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1,585,977	+				+0.7
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1,586,235	-				-1.8
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1,586,269	-				-1.9
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1,586,886	-				-1.4
1,586,886	-				+0.6
1,586,897	-				+0.4