Strain Fitness in Sphingobium sp. HT1-2 around GFF1520

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,548,950	-				+0.7
1,548,981	+				-0.2
1,548,984	-				-0.3
1,548,984	-				-2.3
1,548,986	+				-0.2
1,548,986	+				-0.9
1,548,986	+				-0.7
1,548,986	+				-0.4
1,548,986	+				+1.2
1,548,986	+				-0.8
1,548,986	+				-0.4
1,548,986	+				-0.7
1,548,986	+				-2.0
1,548,986	+				-0.3
1,548,986	+				-0.4
1,548,989	-				-0.1
1,548,989	-				-0.2
1,548,994	-				-1.9
1,548,994	-				-0.4
1,548,994	-				-0.5
1,548,994	-				-0.9
1,548,994	-				+0.2
1,548,994	-				+0.1
1,549,004	-				+0.3
1,549,004	-				-1.1
1,549,004	-				+0.8
1,549,029	+		GFF1519	0.11	-1.9
1,549,039	-		GFF1519	0.12	-0.9
1,549,070	+		GFF1519	0.15	-0.0
1,549,077	-		GFF1519	0.16	+0.4
1,549,077	-		GFF1519	0.16	-1.3
1,549,102	-		GFF1519	0.19	+0.9
1,549,102	-		GFF1519	0.19	+0.7
1,549,109	-		GFF1519	0.20	+0.0
1,549,124	+		GFF1519	0.21	-0.3
1,549,124	+		GFF1519	0.21	+1.1
1,549,127	-		GFF1519	0.22	+1.1
1,549,140	-		GFF1519	0.23	-0.1
1,549,140	-		GFF1519	0.23	-0.9
1,549,152	-		GFF1519	0.24	+0.1
1,549,152	-		GFF1519	0.24	-0.6
1,549,201	-		GFF1519	0.29	-0.6
1,549,203	-		GFF1519	0.30	-1.6
1,549,209	-		GFF1519	0.30	-1.2
1,549,222	+		GFF1519	0.32	-0.7
1,549,222	+		GFF1519	0.32	-1.8
1,549,222	-		GFF1519	0.32	-1.6
1,549,222	-		GFF1519	0.32	-0.7
1,549,228	-		GFF1519	0.32	-1.1
1,549,233	-		GFF1519	0.33	-0.9
1,549,242	+		GFF1519	0.34	-1.8
1,549,250	-		GFF1519	0.35	+0.2
1,549,258	+		GFF1519	0.36	-1.1
1,549,290	+		GFF1519	0.39	-2.3
1,549,300	+		GFF1519	0.40	-0.7
1,549,305	+		GFF1519	0.41	-0.9
1,549,326	-		GFF1519	0.43	+0.7
1,549,326	-		GFF1519	0.43	-0.4
1,549,350	-		GFF1519	0.45	+0.1
1,549,383	+		GFF1519	0.49	-1.2
1,549,390	-		GFF1519	0.50	-0.5
1,549,399	-		GFF1519	0.51	-1.5
1,549,406	+		GFF1519	0.51	-0.1
1,549,412	-		GFF1519	0.52	-1.3
1,549,439	+		GFF1519	0.55	+0.1
1,549,451	+		GFF1519	0.56	+0.1
1,549,453	+		GFF1519	0.56	-1.4
1,549,459	-		GFF1519	0.57	+0.4
1,549,459	-		GFF1519	0.57	+0.2
1,549,459	-		GFF1519	0.57	-2.2
1,549,459	-		GFF1519	0.57	-0.5
1,549,461	+		GFF1519	0.57	+0.0
1,549,463	+		GFF1519	0.58	+0.6
1,549,485	+		GFF1519	0.60	+0.3
1,549,493	-		GFF1519	0.61	+0.9
1,549,493	-		GFF1519	0.61	-0.3
1,549,501	+		GFF1519	0.62	-1.8
1,549,501	+		GFF1519	0.62	-1.7
1,549,501	+		GFF1519	0.62	-0.1
1,549,501	+		GFF1519	0.62	+0.6
1,549,501	+		GFF1519	0.62	-0.0
1,549,501	+		GFF1519	0.62	-0.8
1,549,509	-		GFF1519	0.62	+0.0
1,549,509	-		GFF1519	0.62	-1.8
1,549,509	-		GFF1519	0.62	+0.5
1,549,509	-		GFF1519	0.62	-1.5
1,549,509	-		GFF1519	0.62	-0.7
1,549,509	-		GFF1519	0.62	-0.3
1,549,509	-		GFF1519	0.62	+0.1
1,549,509	-		GFF1519	0.62	-1.4
1,549,509	-		GFF1519	0.62	-1.2
1,549,509	-		GFF1519	0.62	+1.0
1,549,514	-		GFF1519	0.63	-0.6
1,549,540	+		GFF1519	0.66	-1.3
1,549,540	+		GFF1519	0.66	+0.7
1,549,548	-		GFF1519	0.67	-0.4
1,549,551	+		GFF1519	0.67	-2.8
1,549,553	-		GFF1519	0.67	-0.1
1,549,553	-		GFF1519	0.67	-0.9
1,549,553	-		GFF1519	0.67	-2.0
1,549,553	-		GFF1519	0.67	-1.1
1,549,556	+		GFF1519	0.68	+0.4
1,549,556	+		GFF1519	0.68	+0.1
1,549,557	-		GFF1519	0.68	-0.3
1,549,559	-		GFF1519	0.68	-2.1
1,549,573	-		GFF1519	0.69	-0.8
1,549,581	+		GFF1519	0.70	+0.1
1,549,587	+		GFF1519	0.71	-1.0
1,549,589	-		GFF1519	0.71	-0.3
1,549,592	+		GFF1519	0.71	-0.8
1,549,592	+		GFF1519	0.71	-0.4
1,549,594	-		GFF1519	0.72	+0.4
1,549,600	-		GFF1519	0.72	-0.1
1,549,601	-		GFF1519	0.72	-1.0
1,549,606	-		GFF1519	0.73	+0.1
1,549,611	-		GFF1519	0.73	-2.3
1,549,611	-		GFF1519	0.73	+0.2
1,549,611	-		GFF1519	0.73	-2.1
1,549,649	+		GFF1519	0.77	-1.6
1,549,649	+		GFF1519	0.77	-0.2
1,549,654	+		GFF1519	0.78	-1.6
1,549,657	-		GFF1519	0.78	-1.5
1,549,657	-		GFF1519	0.78	-1.0
1,549,669	-		GFF1519	0.80	+0.6
1,549,766	+				-1.9
1,549,766	+				-1.5
1,549,769	-				-0.3
1,549,769	-				-1.0
1,549,771	+				-1.9
1,549,794	-				+0.1
1,549,794	-				-2.6
1,549,807	+				-2.1
1,549,807	+				-0.3
1,549,807	+				-1.5
1,549,812	+				-0.4
1,549,815	-				+0.2
1,549,815	-				+0.7
1,549,818	-				-0.6
1,549,818	-				+0.0
1,549,867	-				-0.1
1,549,890	+				-0.3
1,549,900	-				+0.2
1,549,911	+				-0.2
1,549,919	-				-2.3
1,549,929	+				-2.2
1,549,948	+				+0.6
1,549,956	-				-1.3
1,549,958	+				+0.6
1,549,963	+				-0.8
1,549,971	+				-0.5
1,549,979	-				-0.8
1,549,980	-				-1.8
1,549,989	-				-1.9
1,549,991	+				-0.5
1,549,999	-				-0.1
1,549,999	-				-0.0
1,549,999	-				-1.9
1,550,019	+				-0.1
1,550,019	+				-0.6
1,550,020	-				-0.5
1,550,027	-				+0.1
1,550,034	+				-1.2
1,550,034	+				+0.4
1,550,034	+				+0.3
1,550,034	+				-1.8
1,550,037	-				+0.0
1,550,042	-				-0.5
1,550,042	-				-1.4
1,550,042	-				-1.3
1,550,042	-				-0.9
1,550,042	-				-0.5
1,550,042	-				+0.1
1,550,042	-				-0.8
1,550,042	-				+0.6
1,550,042	-				-2.3
1,550,042	-				-1.1
1,550,042	-				-2.5
1,550,042	-				-0.1
1,550,042	-				+0.6
1,550,042	-				+0.5
1,550,042	-				+0.7
1,550,042	-				-0.3
1,550,042	-				-1.4
1,550,044	+				-1.3
1,550,072	-				-1.1
1,550,083	-				-0.1
1,550,083	-				-2.3
1,550,105	+		GFF1520	0.11	-1.4
1,550,109	-		GFF1520	0.11	-2.9
1,550,109	-		GFF1520	0.11	+0.1
1,550,111	-		GFF1520	0.11	-0.6
1,550,113	-		GFF1520	0.12	+0.1
1,550,120	+		GFF1520	0.12	-0.2
1,550,120	+		GFF1520	0.12	-1.3
1,550,120	+		GFF1520	0.12	-0.3
1,550,120	+		GFF1520	0.12	-1.2
1,550,127	+		GFF1520	0.13	+0.7
1,550,128	-		GFF1520	0.13	-0.8
1,550,128	-		GFF1520	0.13	+0.0
1,550,128	-		GFF1520	0.13	-0.3
1,550,128	-		GFF1520	0.13	-0.4
1,550,135	-		GFF1520	0.13	-1.6
1,550,137	+		GFF1520	0.13	-1.7
1,550,145	-		GFF1520	0.14	-1.8
1,550,149	+		GFF1520	0.14	-2.7
1,550,157	-		GFF1520	0.15	-1.4
1,550,169	-		GFF1520	0.16	+1.7
1,550,169	-		GFF1520	0.16	+0.2
1,550,182	+		GFF1520	0.16	+0.1
1,550,182	+		GFF1520	0.16	+1.2
1,550,182	+		GFF1520	0.16	-0.5
1,550,182	+		GFF1520	0.16	-1.0
1,550,182	+		GFF1520	0.16	-0.2
1,550,182	+		GFF1520	0.16	+0.7
1,550,182	+		GFF1520	0.16	-1.3
1,550,182	+		GFF1520	0.16	+0.3
1,550,184	-		GFF1520	0.17	+0.4
1,550,190	-		GFF1520	0.17	+0.5
1,550,190	-		GFF1520	0.17	-1.7
1,550,190	-		GFF1520	0.17	+0.2
1,550,190	-		GFF1520	0.17	+0.6
1,550,190	-		GFF1520	0.17	-0.5
1,550,190	-		GFF1520	0.17	-1.2
1,550,190	-		GFF1520	0.17	-0.1
1,550,197	+		GFF1520	0.18	-0.3
1,550,197	+		GFF1520	0.18	-0.7
1,550,197	+		GFF1520	0.18	-1.6
1,550,197	+		GFF1520	0.18	-1.4
1,550,197	+		GFF1520	0.18	-0.5
1,550,200	-		GFF1520	0.18	-1.0
1,550,200	-		GFF1520	0.18	-0.7
1,550,200	-		GFF1520	0.18	-1.4
1,550,202	+		GFF1520	0.18	-2.1
1,550,202	+		GFF1520	0.18	-0.8
1,550,205	-		GFF1520	0.18	+0.4
1,550,205	-		GFF1520	0.18	+0.9
1,550,205	-		GFF1520	0.18	-0.3
1,550,205	-		GFF1520	0.18	-0.2
1,550,205	-		GFF1520	0.18	-0.2
1,550,205	-		GFF1520	0.18	-0.2
1,550,205	-		GFF1520	0.18	-0.5
1,550,205	-		GFF1520	0.18	-0.7
1,550,205	-		GFF1520	0.18	-0.6
1,550,209	+		GFF1520	0.18	-1.2
1,550,209	+		GFF1520	0.18	-1.0
1,550,210	-		GFF1520	0.18	-0.8
1,550,210	-		GFF1520	0.18	+0.7
1,550,210	-		GFF1520	0.18	-0.1
1,550,210	-		GFF1520	0.18	+0.2
1,550,210	-		GFF1520	0.18	-2.1
1,550,210	-		GFF1520	0.18	-0.2
1,550,217	-		GFF1520	0.19	-0.5
1,550,217	-		GFF1520	0.19	-0.2
1,550,217	-		GFF1520	0.19	+0.5
1,550,217	-		GFF1520	0.19	+0.3
1,550,225	+		GFF1520	0.20	-1.0
1,550,225	+		GFF1520	0.20	-2.1
1,550,225	+		GFF1520	0.20	-2.2
1,550,225	+		GFF1520	0.20	-0.2
1,550,225	+		GFF1520	0.20	+1.0
1,550,225	+		GFF1520	0.20	+0.1
1,550,230	+		GFF1520	0.20	-1.1
1,550,233	-		GFF1520	0.20	+0.0
1,550,233	-		GFF1520	0.20	-0.8
1,550,233	-		GFF1520	0.20	-1.5
1,550,233	-		GFF1520	0.20	-1.3
1,550,233	-		GFF1520	0.20	-2.8
1,550,233	-		GFF1520	0.20	+0.1
1,550,238	-		GFF1520	0.20	+0.1
1,550,240	+		GFF1520	0.21	-1.9
1,550,243	-		GFF1520	0.21	-0.8
1,550,259	+		GFF1520	0.22	+0.5
1,550,267	-		GFF1520	0.22	-0.1
1,550,276	+		GFF1520	0.23	-1.4
1,550,286	+		GFF1520	0.24	+0.5
1,550,295	+		GFF1520	0.24	-0.4
1,550,321	+		GFF1520	0.26	+1.3
1,550,328	-		GFF1520	0.27	-0.1
1,550,328	-		GFF1520	0.27	-1.3
1,550,336	-		GFF1520	0.27	-1.2
1,550,337	+		GFF1520	0.27	+0.2
1,550,337	+		GFF1520	0.27	-1.2
1,550,342	+		GFF1520	0.28	-1.0
1,550,345	-		GFF1520	0.28	-0.6
1,550,345	-		GFF1520	0.28	+0.3
1,550,345	-		GFF1520	0.28	-0.3
1,550,345	-		GFF1520	0.28	+0.4
1,550,349	+		GFF1520	0.28	-0.5
1,550,363	-		GFF1520	0.29	+0.7
1,550,372	+		GFF1520	0.30	+0.1
1,550,372	+		GFF1520	0.30	-1.5
1,550,380	-		GFF1520	0.30	+0.1
1,550,400	+		GFF1520	0.32	-2.0
1,550,400	+		GFF1520	0.32	-0.3
1,550,400	+		GFF1520	0.32	+1.1
1,550,400	+		GFF1520	0.32	-1.3
1,550,400	+		GFF1520	0.32	-0.8
1,550,408	-		GFF1520	0.32	-2.1
1,550,408	-		GFF1520	0.32	+0.3
1,550,408	-		GFF1520	0.32	-0.7
1,550,408	-		GFF1520	0.32	-1.0
1,550,408	-		GFF1520	0.32	-0.5
1,550,418	-		GFF1520	0.33	-0.1
1,550,440	+		GFF1520	0.35	-2.2
1,550,448	-		GFF1520	0.35	+0.0
1,550,474	-		GFF1520	0.37	-0.9
1,550,481	+		GFF1520	0.38	-1.1
1,550,481	-		GFF1520	0.38	+0.2
1,550,481	-		GFF1520	0.38	-2.7
1,550,517	-		GFF1520	0.40	-1.3
1,550,564	-		GFF1520	0.44	-1.2
1,550,570	+		GFF1520	0.44	+0.6
1,550,570	+		GFF1520	0.44	-0.6
1,550,570	+		GFF1520	0.44	+0.3
1,550,570	+		GFF1520	0.44	-2.2
1,550,578	-		GFF1520	0.45	-1.8
1,550,578	-		GFF1520	0.45	+1.3
1,550,578	-		GFF1520	0.45	-1.6
1,550,578	-		GFF1520	0.45	-0.9
1,550,578	-		GFF1520	0.45	-0.3
1,550,578	-		GFF1520	0.45	-0.8
1,550,619	-		GFF1520	0.47	-2.0
1,550,629	+		GFF1520	0.48	-1.4
1,550,629	+		GFF1520	0.48	-0.7
1,550,629	+		GFF1520	0.48	-0.4
1,550,629	+		GFF1520	0.48	+0.3
1,550,637	-		GFF1520	0.49	-0.2
1,550,637	-		GFF1520	0.49	-0.4
1,550,639	+		GFF1520	0.49	-0.4
1,550,639	+		GFF1520	0.49	+1.0
1,550,647	-		GFF1520	0.49	-0.0
1,550,647	-		GFF1520	0.49	-0.5
1,550,647	-		GFF1520	0.49	-0.1
1,550,667	+		GFF1520	0.51	-1.3
1,550,683	+		GFF1520	0.52	-1.4
1,550,686	+		GFF1520	0.52	-0.8
1,550,686	+		GFF1520	0.52	-0.5
1,550,698	-		GFF1520	0.53	+0.7
1,550,705	-		GFF1520	0.54	-0.7
1,550,715	+		GFF1520	0.54	+0.6
1,550,715	+		GFF1520	0.54	-1.8
1,550,717	+		GFF1520	0.54	-0.5
1,550,725	-		GFF1520	0.55	-1.1
1,550,729	-		GFF1520	0.55	-1.4
1,550,746	-		GFF1520	0.56	-0.1
1,550,752	+		GFF1520	0.57	-1.6
1,550,754	+		GFF1520	0.57	-0.9
1,550,766	+		GFF1520	0.58	+0.7
1,550,769	-		GFF1520	0.58	-0.9
1,550,779	+		GFF1520	0.59	-1.0
1,550,793	-		GFF1520	0.60	-0.5
1,550,800	+		GFF1520	0.60	-0.1
1,550,800	+		GFF1520	0.60	-0.3
1,550,800	+		GFF1520	0.60	-0.6
1,550,800	+		GFF1520	0.60	-0.5
1,550,800	+		GFF1520	0.60	-1.4
1,550,800	+		GFF1520	0.60	+0.3
1,550,800	+		GFF1520	0.60	-1.1
1,550,800	+		GFF1520	0.60	+1.6
1,550,800	+		GFF1520	0.60	+1.7
1,550,800	+		GFF1520	0.60	+0.0
1,550,800	+		GFF1520	0.60	-0.5
1,550,800	+		GFF1520	0.60	+0.4
1,550,800	+		GFF1520	0.60	+1.1
1,550,800	+		GFF1520	0.60	+0.7
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1,550,808	-		GFF1520	0.61	-2.0
1,550,808	-		GFF1520	0.61	-2.1
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1,550,808	-		GFF1520	0.61	-0.6
1,550,808	-		GFF1520	0.61	-0.5
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1,550,808	-		GFF1520	0.61	-1.3
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1,550,808	-		GFF1520	0.61	-0.2
1,550,808	-		GFF1520	0.61	-0.8
1,550,808	-		GFF1520	0.61	-0.1
1,550,808	-		GFF1520	0.61	-1.4
1,550,808	-		GFF1520	0.61	-1.7
1,550,808	-		GFF1520	0.61	+0.0
1,550,808	-		GFF1520	0.61	+1.8
1,550,808	-		GFF1520	0.61	-2.4
1,550,808	-		GFF1520	0.61	-0.5
1,550,808	-		GFF1520	0.61	-0.1
1,550,808	-		GFF1520	0.61	-0.8
1,550,808	-		GFF1520	0.61	-2.4
1,550,808	-		GFF1520	0.61	+0.1
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1,550,808	-		GFF1520	0.61	-1.3
1,550,808	-		GFF1520	0.61	+0.5
1,550,808	-		GFF1520	0.61	+0.1
1,550,808	-		GFF1520	0.61	+0.7
1,550,808	-		GFF1520	0.61	-1.8
1,550,808	-		GFF1520	0.61	-1.0
1,550,808	-		GFF1520	0.61	+0.9
1,550,808	-		GFF1520	0.61	-0.5
1,550,808	-		GFF1520	0.61	-0.4
1,550,808	-		GFF1520	0.61	-0.1
1,550,808	-		GFF1520	0.61	-0.8
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1,550,819	+		GFF1520	0.62	+0.7
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1,550,860	+		GFF1520	0.65	+1.6
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1,550,868	-		GFF1520	0.65	+0.3
1,550,873	-		GFF1520	0.65	+0.6
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1,550,878	-		GFF1520	0.66	-0.8
1,550,878	-		GFF1520	0.66	-1.8
1,550,880	-		GFF1520	0.66	-1.0
1,550,882	-		GFF1520	0.66	-0.4
1,550,901	-		GFF1520	0.67	+0.7
1,550,911	-		GFF1520	0.68	+0.0
1,550,913	+		GFF1520	0.68	-1.5
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1,550,925	+		GFF1520	0.69	-0.8
1,550,952	+		GFF1520	0.71	-0.6
1,550,953	+		GFF1520	0.71	-0.4
1,550,953	+		GFF1520	0.71	+0.2
1,550,953	+		GFF1520	0.71	-1.8
1,550,960	-		GFF1520	0.72	+1.3
1,550,960	-		GFF1520	0.72	-1.8
1,550,960	-		GFF1520	0.72	-1.2
1,550,961	-		GFF1520	0.72	+1.1
1,550,961	-		GFF1520	0.72	+0.4
1,550,961	-		GFF1520	0.72	-0.5
1,550,961	-		GFF1520	0.72	+1.0
1,550,961	-		GFF1520	0.72	-0.2
1,550,996	+		GFF1520	0.74	+0.6
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1,551,004	-		GFF1520	0.75	-0.3
1,551,014	+		GFF1520	0.75	-1.4
1,551,041	+		GFF1520	0.77	-0.2
1,551,062	+		GFF1520	0.79	+0.4
1,551,082	+		GFF1520	0.80	-0.4
1,551,085	-		GFF1520	0.80	-1.6
1,551,089	+		GFF1520	0.81	+2.0
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1,551,112	+		GFF1520	0.82	+0.6
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1,551,112	-		GFF1520	0.82	-0.4
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1,551,114	-		GFF1520	0.83	-1.9
1,551,116	+		GFF1520	0.83	+0.7
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1,551,161	+		GFF1520	0.86	-1.8
1,551,161	+		GFF1520	0.86	-1.5
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1,551,169	-		GFF1520	0.86	-0.7
1,551,171	+		GFF1520	0.87	-0.1
1,551,255	-				-0.6
1,551,270	+				-0.9
1,551,270	+				-1.2
1,551,270	+				+0.1
1,551,270	+				+0.5
1,551,270	+				-1.1
1,551,278	-				-2.3
1,551,278	-				-0.8
1,551,278	-				-0.1
1,551,282	-				-0.6
1,551,302	-				-1.1
1,551,315	+				-0.6
1,551,318	-				-3.4
1,551,378	+				+1.0
1,551,386	-				-2.9
1,551,386	-				-0.6
1,551,389	+				-0.1
1,551,462	+		GFF1521	0.15	-1.1
1,551,482	+		GFF1521	0.28	-0.4
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1,551,536	+		GFF1521	0.64	-1.7
1,551,540	+		GFF1521	0.67	-1.7
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1,551,585	+				+0.5
1,551,585	+				-1.1
1,551,593	-				+0.3
1,551,629	+				-0.7
1,551,629	+				-0.6
1,551,629	+				-0.3
1,551,778	+				-0.7
1,551,798	-				-0.0
1,551,866	+				-1.0
1,551,866	+				+0.1
1,551,866	+				-0.9
1,551,866	+				+1.7
1,551,866	+				+0.2
1,551,866	+				-1.5
1,551,866	+				+0.7
1,551,874	-				-0.3
1,551,874	-				-0.4
1,551,876	+				+0.4
1,551,876	+				-0.2
1,551,884	-				-0.9
1,551,884	-				-1.6
1,551,903	+				+0.0
1,551,914	+				+1.3
1,551,914	+				-0.4
1,551,919	+				+0.6
1,551,922	-				-1.3
1,551,922	-				-1.5
1,551,922	-				-1.8
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1,551,924	+				+0.6
1,551,924	+				+0.2
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1,551,927	-				+0.6
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1,551,932	-				-0.7
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1,551,976	-				-0.2
1,551,987	-				-0.9
1,551,987	-				-0.2
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1,552,113	-		GFF1523	0.19	-2.3
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