Strain Fitness in Sphingobium sp. HT1-2 around GFF1519

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,547,929	+		GFF1517	0.89	+0.7
1,547,932	-		GFF1517	0.89	-1.1
1,547,937	-		GFF1517	0.90	-0.8
1,547,942	-				+0.4
1,547,978	-				+0.1
1,547,981	+				-1.3
1,547,981	+				+0.4
1,547,983	-				+0.1
1,547,984	-				-1.1
1,547,984	-				+1.7
1,547,989	-				+0.7
1,547,993	+				-1.5
1,548,001	+				-0.6
1,548,001	+				-0.4
1,548,001	+				-0.8
1,548,009	-				-0.1
1,548,009	-				+0.6
1,548,013	+				+0.2
1,548,021	+				+0.1
1,548,029	-				+0.9
1,548,039	-				+0.5
1,548,039	-				-0.3
1,548,055	+				-1.5
1,548,068	-				-0.4
1,548,068	-				+0.5
1,548,073	-				-1.3
1,548,073	-				-0.6
1,548,111	-				-0.3
1,548,155	+		GFF1518	0.13	-0.3
1,548,155	-		GFF1518	0.13	+0.7
1,548,160	+		GFF1518	0.14	-1.0
1,548,163	-		GFF1518	0.14	-0.8
1,548,168	-		GFF1518	0.15	+0.3
1,548,176	+		GFF1518	0.16	+0.0
1,548,176	+		GFF1518	0.16	+0.4
1,548,179	-		GFF1518	0.16	+1.0
1,548,181	+		GFF1518	0.16	+0.1
1,548,192	+		GFF1518	0.18	+0.1
1,548,192	+		GFF1518	0.18	+0.5
1,548,200	-		GFF1518	0.19	-0.8
1,548,200	-		GFF1518	0.19	+0.7
1,548,209	+		GFF1518	0.20	+0.7
1,548,209	+		GFF1518	0.20	+0.1
1,548,219	+		GFF1518	0.21	+0.5
1,548,227	-		GFF1518	0.22	-0.9
1,548,227	-		GFF1518	0.22	-0.3
1,548,227	-		GFF1518	0.22	+1.0
1,548,232	-		GFF1518	0.22	+0.3
1,548,246	-		GFF1518	0.24	-0.1
1,548,256	-		GFF1518	0.25	+0.8
1,548,256	-		GFF1518	0.25	+0.3
1,548,256	-		GFF1518	0.25	-0.7
1,548,256	-		GFF1518	0.25	-0.5
1,548,257	-		GFF1518	0.25	+0.3
1,548,259	+		GFF1518	0.25	+0.6
1,548,259	+		GFF1518	0.25	-0.3
1,548,259	+		GFF1518	0.25	+1.4
1,548,264	+		GFF1518	0.26	-1.3
1,548,267	-		GFF1518	0.26	-0.4
1,548,267	-		GFF1518	0.26	+1.2
1,548,267	-		GFF1518	0.26	-0.9
1,548,272	-		GFF1518	0.27	+0.3
1,548,279	-		GFF1518	0.28	-0.7
1,548,283	+		GFF1518	0.28	-1.1
1,548,288	+		GFF1518	0.29	-0.8
1,548,289	+		GFF1518	0.29	-1.5
1,548,294	+		GFF1518	0.29	-0.6
1,548,301	+		GFF1518	0.30	-0.4
1,548,302	-		GFF1518	0.30	+0.5
1,548,302	-		GFF1518	0.30	+0.1
1,548,302	-		GFF1518	0.30	-0.3
1,548,302	-		GFF1518	0.30	-0.7
1,548,302	-		GFF1518	0.30	-0.4
1,548,302	-		GFF1518	0.30	-0.5
1,548,309	-		GFF1518	0.31	+0.6
1,548,344	+		GFF1518	0.35	-0.4
1,548,347	-		GFF1518	0.36	-0.1
1,548,363	+		GFF1518	0.37	+0.1
1,548,379	-		GFF1518	0.39	+0.2
1,548,385	+		GFF1518	0.40	-1.0
1,548,413	+		GFF1518	0.43	+1.2
1,548,413	+		GFF1518	0.43	-0.9
1,548,413	+		GFF1518	0.43	+0.4
1,548,413	+		GFF1518	0.43	+1.3
1,548,413	+		GFF1518	0.43	-1.1
1,548,413	+		GFF1518	0.43	-0.3
1,548,413	+		GFF1518	0.43	-0.1
1,548,415	+		GFF1518	0.43	+0.3
1,548,421	-		GFF1518	0.44	-0.4
1,548,421	-		GFF1518	0.44	-2.4
1,548,421	-		GFF1518	0.44	-1.0
1,548,421	-		GFF1518	0.44	-2.3
1,548,423	-		GFF1518	0.44	-0.1
1,548,423	-		GFF1518	0.44	-1.2
1,548,423	-		GFF1518	0.44	-2.1
1,548,423	-		GFF1518	0.44	-0.7
1,548,427	+		GFF1518	0.45	-0.2
1,548,432	+		GFF1518	0.45	-0.2
1,548,432	+		GFF1518	0.45	+0.2
1,548,433	-		GFF1518	0.45	+0.8
1,548,433	-		GFF1518	0.45	-2.8
1,548,440	-		GFF1518	0.46	+1.3
1,548,440	-		GFF1518	0.46	+1.1
1,548,440	-		GFF1518	0.46	-1.0
1,548,440	-		GFF1518	0.46	-1.4
1,548,440	-		GFF1518	0.46	-1.5
1,548,440	-		GFF1518	0.46	-1.0
1,548,440	-		GFF1518	0.46	-0.5
1,548,440	-		GFF1518	0.46	-1.3
1,548,448	-		GFF1518	0.47	-2.2
1,548,449	+		GFF1518	0.47	-2.1
1,548,453	-		GFF1518	0.48	-0.5
1,548,459	+		GFF1518	0.48	-0.2
1,548,464	+		GFF1518	0.49	+1.3
1,548,467	-		GFF1518	0.49	+0.3
1,548,482	-		GFF1518	0.51	-1.2
1,548,508	+		GFF1518	0.54	+1.1
1,548,515	-		GFF1518	0.55	-0.1
1,548,518	-		GFF1518	0.55	+1.3
1,548,537	+		GFF1518	0.57	-0.4
1,548,546	+		GFF1518	0.58	-0.1
1,548,547	+		GFF1518	0.59	+1.1
1,548,582	+		GFF1518	0.63	-0.4
1,548,582	+		GFF1518	0.63	+0.0
1,548,582	+		GFF1518	0.63	-1.0
1,548,582	+		GFF1518	0.63	+0.4
1,548,585	-		GFF1518	0.63	-0.6
1,548,587	+		GFF1518	0.63	-0.1
1,548,590	-		GFF1518	0.64	-1.5
1,548,590	-		GFF1518	0.64	+0.2
1,548,590	-		GFF1518	0.64	-2.3
1,548,590	-		GFF1518	0.64	+0.2
1,548,590	-		GFF1518	0.64	-0.0
1,548,590	-		GFF1518	0.64	-0.9
1,548,590	-		GFF1518	0.64	+0.2
1,548,590	-		GFF1518	0.64	+0.5
1,548,590	-		GFF1518	0.64	-0.1
1,548,590	-		GFF1518	0.64	-1.9
1,548,590	-		GFF1518	0.64	+0.6
1,548,590	-		GFF1518	0.64	-0.5
1,548,653	-		GFF1518	0.71	-0.6
1,548,656	+		GFF1518	0.71	+0.4
1,548,668	-		GFF1518	0.73	-1.2
1,548,679	-		GFF1518	0.74	-1.1
1,548,680	-		GFF1518	0.74	+0.5
1,548,682	-		GFF1518	0.74	+0.7
1,548,687	-		GFF1518	0.75	-3.2
1,548,703	-		GFF1518	0.77	-0.3
1,548,703	-		GFF1518	0.77	+0.1
1,548,705	+		GFF1518	0.77	-0.3
1,548,705	+		GFF1518	0.77	+0.3
1,548,709	+		GFF1518	0.77	-1.8
1,548,713	-		GFF1518	0.78	+0.3
1,548,713	-		GFF1518	0.78	-1.9
1,548,713	-		GFF1518	0.78	-0.2
1,548,713	-		GFF1518	0.78	-1.3
1,548,722	-		GFF1518	0.79	-0.7
1,548,724	+		GFF1518	0.79	+0.8
1,548,748	+		GFF1518	0.82	-1.4
1,548,762	-		GFF1518	0.83	+0.2
1,548,769	+		GFF1518	0.84	+0.6
1,548,772	+		GFF1518	0.85	-1.3
1,548,778	+		GFF1518	0.85	-1.5
1,548,778	+		GFF1518	0.85	+0.2
1,548,786	-		GFF1518	0.86	-0.6
1,548,786	-		GFF1518	0.86	-0.8
1,548,792	+		GFF1518	0.87	-1.8
1,548,792	+		GFF1518	0.87	-0.4
1,548,800	-		GFF1518	0.88	-1.8
1,548,800	-		GFF1518	0.88	-0.6
1,548,800	-		GFF1518	0.88	+1.4
1,548,802	+		GFF1518	0.88	+0.9
1,548,828	-				-0.5
1,548,837	-				-1.3
1,548,870	+				-0.2
1,548,870	+				+0.9
1,548,870	+				-1.7
1,548,870	+				+0.4
1,548,870	+				+0.0
1,548,870	+				+0.1
1,548,870	+				-1.0
1,548,870	+				+0.4
1,548,878	-				-2.5
1,548,878	-				-0.7
1,548,878	-				+0.3
1,548,878	-				-0.4
1,548,878	-				+0.5
1,548,878	-				-1.2
1,548,878	-				-0.5
1,548,884	+				-1.7
1,548,892	-				+0.7
1,548,892	-				-0.6
1,548,915	+				-0.2
1,548,922	+				-0.7
1,548,924	-				-0.5
1,548,950	-				+0.7
1,548,981	+				-0.2
1,548,984	-				-0.3
1,548,984	-				-2.3
1,548,986	+				-0.2
1,548,986	+				-0.9
1,548,986	+				-0.7
1,548,986	+				-0.4
1,548,986	+				+1.2
1,548,986	+				-0.8
1,548,986	+				-0.4
1,548,986	+				-0.7
1,548,986	+				-2.0
1,548,986	+				-0.3
1,548,986	+				-0.4
1,548,989	-				-0.1
1,548,989	-				-0.2
1,548,994	-				-1.9
1,548,994	-				-0.4
1,548,994	-				-0.5
1,548,994	-				-0.9
1,548,994	-				+0.2
1,548,994	-				+0.1
1,549,004	-				+0.3
1,549,004	-				-1.1
1,549,004	-				+0.8
1,549,029	+		GFF1519	0.11	-1.9
1,549,039	-		GFF1519	0.12	-0.9
1,549,070	+		GFF1519	0.15	-0.0
1,549,077	-		GFF1519	0.16	+0.4
1,549,077	-		GFF1519	0.16	-1.3
1,549,102	-		GFF1519	0.19	+0.9
1,549,102	-		GFF1519	0.19	+0.7
1,549,109	-		GFF1519	0.20	+0.0
1,549,124	+		GFF1519	0.21	-0.3
1,549,124	+		GFF1519	0.21	+1.1
1,549,127	-		GFF1519	0.22	+1.1
1,549,140	-		GFF1519	0.23	-0.1
1,549,140	-		GFF1519	0.23	-0.9
1,549,152	-		GFF1519	0.24	+0.1
1,549,152	-		GFF1519	0.24	-0.6
1,549,201	-		GFF1519	0.29	-0.6
1,549,203	-		GFF1519	0.30	-1.6
1,549,209	-		GFF1519	0.30	-1.2
1,549,222	+		GFF1519	0.32	-0.7
1,549,222	+		GFF1519	0.32	-1.8
1,549,222	-		GFF1519	0.32	-1.6
1,549,222	-		GFF1519	0.32	-0.7
1,549,228	-		GFF1519	0.32	-1.1
1,549,233	-		GFF1519	0.33	-0.9
1,549,242	+		GFF1519	0.34	-1.8
1,549,250	-		GFF1519	0.35	+0.2
1,549,258	+		GFF1519	0.36	-1.1
1,549,290	+		GFF1519	0.39	-2.3
1,549,300	+		GFF1519	0.40	-0.7
1,549,305	+		GFF1519	0.41	-0.9
1,549,326	-		GFF1519	0.43	+0.7
1,549,326	-		GFF1519	0.43	-0.4
1,549,350	-		GFF1519	0.45	+0.1
1,549,383	+		GFF1519	0.49	-1.2
1,549,390	-		GFF1519	0.50	-0.5
1,549,399	-		GFF1519	0.51	-1.5
1,549,406	+		GFF1519	0.51	-0.1
1,549,412	-		GFF1519	0.52	-1.3
1,549,439	+		GFF1519	0.55	+0.1
1,549,451	+		GFF1519	0.56	+0.1
1,549,453	+		GFF1519	0.56	-1.4
1,549,459	-		GFF1519	0.57	+0.4
1,549,459	-		GFF1519	0.57	+0.2
1,549,459	-		GFF1519	0.57	-2.2
1,549,459	-		GFF1519	0.57	-0.5
1,549,461	+		GFF1519	0.57	+0.0
1,549,463	+		GFF1519	0.58	+0.6
1,549,485	+		GFF1519	0.60	+0.3
1,549,493	-		GFF1519	0.61	+0.9
1,549,493	-		GFF1519	0.61	-0.3
1,549,501	+		GFF1519	0.62	-1.8
1,549,501	+		GFF1519	0.62	-1.7
1,549,501	+		GFF1519	0.62	-0.1
1,549,501	+		GFF1519	0.62	+0.6
1,549,501	+		GFF1519	0.62	-0.0
1,549,501	+		GFF1519	0.62	-0.8
1,549,509	-		GFF1519	0.62	+0.0
1,549,509	-		GFF1519	0.62	-1.8
1,549,509	-		GFF1519	0.62	+0.5
1,549,509	-		GFF1519	0.62	-1.5
1,549,509	-		GFF1519	0.62	-0.7
1,549,509	-		GFF1519	0.62	-0.3
1,549,509	-		GFF1519	0.62	+0.1
1,549,509	-		GFF1519	0.62	-1.4
1,549,509	-		GFF1519	0.62	-1.2
1,549,509	-		GFF1519	0.62	+1.0
1,549,514	-		GFF1519	0.63	-0.6
1,549,540	+		GFF1519	0.66	-1.3
1,549,540	+		GFF1519	0.66	+0.7
1,549,548	-		GFF1519	0.67	-0.4
1,549,551	+		GFF1519	0.67	-2.8
1,549,553	-		GFF1519	0.67	-0.1
1,549,553	-		GFF1519	0.67	-0.9
1,549,553	-		GFF1519	0.67	-2.0
1,549,553	-		GFF1519	0.67	-1.1
1,549,556	+		GFF1519	0.68	+0.4
1,549,556	+		GFF1519	0.68	+0.1
1,549,557	-		GFF1519	0.68	-0.3
1,549,559	-		GFF1519	0.68	-2.1
1,549,573	-		GFF1519	0.69	-0.8
1,549,581	+		GFF1519	0.70	+0.1
1,549,587	+		GFF1519	0.71	-1.0
1,549,589	-		GFF1519	0.71	-0.3
1,549,592	+		GFF1519	0.71	-0.8
1,549,592	+		GFF1519	0.71	-0.4
1,549,594	-		GFF1519	0.72	+0.4
1,549,600	-		GFF1519	0.72	-0.1
1,549,601	-		GFF1519	0.72	-1.0
1,549,606	-		GFF1519	0.73	+0.1
1,549,611	-		GFF1519	0.73	-2.3
1,549,611	-		GFF1519	0.73	+0.2
1,549,611	-		GFF1519	0.73	-2.1
1,549,649	+		GFF1519	0.77	-1.6
1,549,649	+		GFF1519	0.77	-0.2
1,549,654	+		GFF1519	0.78	-1.6
1,549,657	-		GFF1519	0.78	-1.5
1,549,657	-		GFF1519	0.78	-1.0
1,549,669	-		GFF1519	0.80	+0.6
1,549,766	+				-1.9
1,549,766	+				-1.5
1,549,769	-				-0.3
1,549,769	-				-1.0
1,549,771	+				-1.9
1,549,794	-				+0.1
1,549,794	-				-2.6
1,549,807	+				-2.1
1,549,807	+				-0.3
1,549,807	+				-1.5
1,549,812	+				-0.4
1,549,815	-				+0.2
1,549,815	-				+0.7
1,549,818	-				-0.6
1,549,818	-				+0.0
1,549,867	-				-0.1
1,549,890	+				-0.3
1,549,900	-				+0.2
1,549,911	+				-0.2
1,549,919	-				-2.3
1,549,929	+				-2.2
1,549,948	+				+0.6
1,549,956	-				-1.3
1,549,958	+				+0.6
1,549,963	+				-0.8
1,549,971	+				-0.5
1,549,979	-				-0.8
1,549,980	-				-1.8
1,549,989	-				-1.9
1,549,991	+				-0.5
1,549,999	-				-0.1
1,549,999	-				-0.0
1,549,999	-				-1.9
1,550,019	+				-0.1
1,550,019	+				-0.6
1,550,020	-				-0.5
1,550,027	-				+0.1
1,550,034	+				-1.2
1,550,034	+				+0.4
1,550,034	+				+0.3
1,550,034	+				-1.8
1,550,037	-				+0.0
1,550,042	-				-0.5
1,550,042	-				-1.4
1,550,042	-				-1.3
1,550,042	-				-0.9
1,550,042	-				-0.5
1,550,042	-				+0.1
1,550,042	-				-0.8
1,550,042	-				+0.6
1,550,042	-				-2.3
1,550,042	-				-1.1
1,550,042	-				-2.5
1,550,042	-				-0.1
1,550,042	-				+0.6
1,550,042	-				+0.5
1,550,042	-				+0.7
1,550,042	-				-0.3
1,550,042	-				-1.4
1,550,044	+				-1.3
1,550,072	-				-1.1
1,550,083	-				-0.1
1,550,083	-				-2.3
1,550,105	+		GFF1520	0.11	-1.4
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1,550,200	-		GFF1520	0.18	-1.4
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1,550,210	-		GFF1520	0.18	+0.7
1,550,210	-		GFF1520	0.18	-0.1
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1,550,210	-		GFF1520	0.18	-2.1
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1,550,233	-		GFF1520	0.20	-2.8
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