Strain Fitness in Sphingobium sp. HT1-2 around GFF15

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
9,996	-		GFF14	0.15	-1.7
10,013	-		GFF14	0.16	-2.3
10,029	-		GFF14	0.18	-0.7
10,039	-		GFF14	0.19	-0.2
10,049	+		GFF14	0.19	-0.6
10,067	-		GFF14	0.21	-0.1
10,076	-		GFF14	0.22	-1.1
10,076	-		GFF14	0.22	+0.6
10,098	-		GFF14	0.24	+0.6
10,120	+		GFF14	0.26	+0.4
10,120	+		GFF14	0.26	-1.1
10,128	+		GFF14	0.27	-0.6
10,128	+		GFF14	0.27	-1.1
10,136	-		GFF14	0.28	-1.5
10,146	+		GFF14	0.28	-0.6
10,163	-		GFF14	0.30	+0.8
10,172	-		GFF14	0.31	-0.4
10,197	-		GFF14	0.33	-0.5
10,198	+		GFF14	0.33	-1.2
10,199	+		GFF14	0.33	-1.9
10,216	+		GFF14	0.35	-0.5
10,224	-		GFF14	0.36	+1.1
10,233	-		GFF14	0.36	-0.1
10,249	-		GFF14	0.38	-0.9
10,277	+		GFF14	0.41	-0.2
10,277	+		GFF14	0.41	+1.0
10,284	-		GFF14	0.41	-0.8
10,298	+		GFF14	0.42	+0.4
10,299	+		GFF14	0.43	+0.1
10,307	+		GFF14	0.43	-0.1
10,307	-		GFF14	0.43	-1.6
10,308	+		GFF14	0.43	+0.9
10,323	-		GFF14	0.45	+1.1
10,350	+		GFF14	0.47	+1.0
10,363	-		GFF14	0.49	-1.4
10,375	+		GFF14	0.50	+0.5
10,375	+		GFF14	0.50	+0.1
10,383	-		GFF14	0.50	+0.6
10,383	-		GFF14	0.50	-0.2
10,383	-		GFF14	0.50	-0.5
10,392	+		GFF14	0.51	-1.7
10,406	+		GFF14	0.53	+0.1
10,412	+		GFF14	0.53	-0.5
10,415	-		GFF14	0.53	+0.1
10,417	+		GFF14	0.54	+0.8
10,417	+		GFF14	0.54	-0.8
10,417	+		GFF14	0.54	+0.6
10,417	+		GFF14	0.54	+0.9
10,417	+		GFF14	0.54	+1.2
10,417	+		GFF14	0.54	-1.1
10,417	+		GFF14	0.54	-0.6
10,417	+		GFF14	0.54	+0.4
10,417	+		GFF14	0.54	+1.4
10,417	+		GFF14	0.54	+0.8
10,417	+		GFF14	0.54	-0.6
10,417	+		GFF14	0.54	+0.5
10,417	+		GFF14	0.54	-0.9
10,417	+		GFF14	0.54	-0.6
10,417	+		GFF14	0.54	-0.1
10,417	+		GFF14	0.54	+0.7
10,417	+		GFF14	0.54	+0.5
10,417	+		GFF14	0.54	+0.1
10,417	+		GFF14	0.54	+1.8
10,417	+		GFF14	0.54	+0.9
10,417	+		GFF14	0.54	+0.1
10,417	+		GFF14	0.54	+0.9
10,417	+		GFF14	0.54	-0.8
10,417	+		GFF14	0.54	-1.6
10,417	+		GFF14	0.54	-0.7
10,417	+		GFF14	0.54	+0.2
10,417	+		GFF14	0.54	+1.2
10,417	+		GFF14	0.54	+0.3
10,417	+		GFF14	0.54	+0.3
10,417	+		GFF14	0.54	-0.8
10,417	+		GFF14	0.54	-0.7
10,417	+		GFF14	0.54	+0.6
10,417	+		GFF14	0.54	+0.5
10,417	+		GFF14	0.54	-1.5
10,417	+		GFF14	0.54	-0.7
10,417	+		GFF14	0.54	+1.0
10,417	+		GFF14	0.54	-0.4
10,417	+		GFF14	0.54	-0.0
10,425	-		GFF14	0.54	+0.9
10,425	-		GFF14	0.54	-2.2
10,425	-		GFF14	0.54	+0.1
10,425	-		GFF14	0.54	-0.5
10,425	-		GFF14	0.54	-0.5
10,425	-		GFF14	0.54	+0.2
10,425	-		GFF14	0.54	-0.1
10,425	-		GFF14	0.54	-0.2
10,425	-		GFF14	0.54	-1.1
10,425	-		GFF14	0.54	-0.3
10,425	-		GFF14	0.54	+1.3
10,425	-		GFF14	0.54	-0.8
10,425	-		GFF14	0.54	+0.0
10,425	-		GFF14	0.54	-0.1
10,425	-		GFF14	0.54	+2.3
10,425	-		GFF14	0.54	-2.2
10,425	-		GFF14	0.54	+0.4
10,425	-		GFF14	0.54	+0.2
10,425	-		GFF14	0.54	+0.6
10,425	-		GFF14	0.54	-2.4
10,425	-		GFF14	0.54	-1.1
10,425	-		GFF14	0.54	-0.0
10,425	-		GFF14	0.54	+0.1
10,425	-		GFF14	0.54	-0.4
10,425	-		GFF14	0.54	-0.5
10,425	-		GFF14	0.54	-0.8
10,425	-		GFF14	0.54	+0.1
10,425	-		GFF14	0.54	-0.6
10,425	-		GFF14	0.54	-0.9
10,425	-		GFF14	0.54	+0.1
10,425	-		GFF14	0.54	+0.3
10,426	+		GFF14	0.54	+1.9
10,430	-		GFF14	0.55	-1.8
10,434	+		GFF14	0.55	+0.5
10,435	-		GFF14	0.55	-2.0
10,451	+		GFF14	0.57	-1.1
10,465	-		GFF14	0.58	-0.4
10,481	+		GFF14	0.59	+0.2
10,487	-		GFF14	0.60	-0.5
10,489	-		GFF14	0.60	+0.3
10,489	-		GFF14	0.60	-0.7
10,500	+		GFF14	0.61	+0.4
10,511	+		GFF14	0.62	-0.8
10,519	-		GFF14	0.63	+0.2
10,519	-		GFF14	0.63	-0.4
10,519	-		GFF14	0.63	-2.3
10,521	+		GFF14	0.63	-0.2
10,524	-		GFF14	0.63	-0.8
10,541	+		GFF14	0.65	+0.9
10,551	-		GFF14	0.66	-1.8
10,551	-		GFF14	0.66	+0.9
10,611	+		GFF14	0.71	-0.8
10,619	-		GFF14	0.72	+0.3
10,619	-		GFF14	0.72	+0.6
10,635	-		GFF14	0.74	-0.5
10,638	+		GFF14	0.74	-0.7
10,644	+		GFF14	0.75	-1.9
10,646	-		GFF14	0.75	-1.3
10,652	-		GFF14	0.75	-1.0
10,652	-		GFF14	0.75	+0.1
10,652	-		GFF14	0.75	-0.5
10,652	-		GFF14	0.75	+0.0
10,659	+		GFF14	0.76	+1.3
10,667	-		GFF14	0.77	-1.1
10,667	-		GFF14	0.77	-1.2
10,668	-		GFF14	0.77	-1.3
10,692	+		GFF14	0.79	+0.3
10,692	+		GFF14	0.79	-0.1
10,692	+		GFF14	0.79	-1.6
10,692	+		GFF14	0.79	+0.8
10,692	+		GFF14	0.79	-1.0
10,700	-		GFF14	0.80	+0.1
10,700	-		GFF14	0.80	+0.7
10,700	-		GFF14	0.80	-0.4
10,700	-		GFF14	0.80	+0.0
10,700	-		GFF14	0.80	+1.4
10,700	-		GFF14	0.80	+0.1
10,709	+		GFF14	0.81	+0.9
10,725	+		GFF14	0.82	+0.3
10,725	+		GFF14	0.82	-0.5
10,726	-		GFF14	0.82	+1.3
10,737	+		GFF14	0.83	+0.1
10,737	+		GFF14	0.83	-0.3
10,737	+		GFF14	0.83	-0.3
10,737	+		GFF14	0.83	+0.3
10,742	+		GFF14	0.84	-1.6
10,745	-		GFF14	0.84	+0.2
10,745	-		GFF14	0.84	+0.6
10,748	+		GFF14	0.84	+0.2
10,771	+		GFF14	0.86	-0.5
10,771	+		GFF14	0.86	-0.2
10,771	+		GFF14	0.86	+0.5
10,773	+		GFF14	0.86	-0.1
10,773	+		GFF14	0.86	-1.8
10,779	-		GFF14	0.87	+0.6
10,810	+		GFF14	0.90	-1.3
10,810	+		GFF14	0.90	-0.5
10,810	+		GFF14	0.90	-0.8
10,810	+		GFF14	0.90	+0.3
10,810	+		GFF14	0.90	+0.8
10,810	+		GFF14	0.90	+0.4
10,810	+		GFF14	0.90	-0.0
10,810	+		GFF14	0.90	-0.8
10,810	+		GFF14	0.90	+0.2
10,810	+		GFF14	0.90	-0.5
10,810	+		GFF14	0.90	+1.2
10,810	+		GFF14	0.90	+0.1
10,810	+		GFF14	0.90	+0.5
10,810	+		GFF14	0.90	-1.8
10,810	+		GFF14	0.90	+0.0
10,810	+		GFF14	0.90	+0.0
10,810	+		GFF14	0.90	-0.6
10,810	+		GFF14	0.90	-0.8
10,810	+		GFF14	0.90	-1.6
10,810	+		GFF14	0.90	-1.2
10,810	+		GFF14	0.90	-1.2
10,810	+		GFF14	0.90	+1.0
10,810	+		GFF14	0.90	+0.2
10,816	+				-1.4
10,816	+				-1.0
10,816	+				+1.9
10,817	+				+1.2
10,818	-				-0.1
10,818	-				+1.1
10,818	-				-0.7
10,818	-				+0.9
10,818	-				-0.9
10,818	-				+0.1
10,818	-				-1.8
10,818	-				+0.2
10,818	-				-0.2
10,818	-				-1.1
10,818	-				-1.0
10,818	-				-0.4
10,818	-				+1.6
10,818	-				+0.5
10,818	-				-0.7
10,818	-				+0.5
10,818	-				-1.8
10,818	-				-1.6
10,824	+				-1.2
10,824	+				+0.3
10,824	-				-0.6
10,824	-				-2.3
10,825	-				+1.2
10,832	-				-1.0
10,839	-				-0.3
10,844	+				-0.4
10,844	+				+0.8
10,844	+				-1.2
10,844	+				-1.7
10,844	+				+0.3
10,844	+				+0.1
10,852	-				-2.0
10,852	-				-0.3
10,852	-				-0.7
10,852	-				-1.5
10,852	-				-0.2
10,852	-				-1.2
10,854	+				-1.8
10,854	+				-0.6
10,859	+				+0.1
10,859	+				-1.4
10,867	-				+0.8
10,876	+				+0.4
10,889	-				-0.8
10,906	-				-0.1
10,921	-				+0.3
10,921	-				-2.2
10,922	+				-2.2
10,929	-				+0.6
10,930	-				+0.8
10,936	+				+0.1
10,947	+				-1.0
10,952	+				-0.2
10,966	-				-0.0
10,967	+				+0.2
11,035	+				+0.2
11,057	+		GFF15	0.13	-0.5
11,058	+		GFF15	0.13	-1.2
11,058	+		GFF15	0.13	-0.2
11,058	+		GFF15	0.13	-0.4
11,065	-		GFF15	0.14	+0.2
11,065	-		GFF15	0.14	-1.9
11,066	-		GFF15	0.14	+0.1
11,071	-		GFF15	0.15	+0.2
11,084	+		GFF15	0.18	-1.1
11,084	+		GFF15	0.18	+0.4
11,084	+		GFF15	0.18	-0.1
11,084	+		GFF15	0.18	-0.2
11,092	-		GFF15	0.19	+0.8
11,092	-		GFF15	0.19	-1.8
11,102	+		GFF15	0.21	-0.2
11,110	-		GFF15	0.23	+1.0
11,110	-		GFF15	0.23	+1.4
11,110	-		GFF15	0.23	-0.1
11,110	-		GFF15	0.23	-0.1
11,118	+		GFF15	0.25	-0.6
11,118	+		GFF15	0.25	+0.3
11,118	+		GFF15	0.25	+0.1
11,118	+		GFF15	0.25	-1.0
11,120	+		GFF15	0.25	-0.4
11,120	+		GFF15	0.25	+0.6
11,120	+		GFF15	0.25	-2.5
11,124	+		GFF15	0.26	-0.1
11,124	+		GFF15	0.26	-1.1
11,124	+		GFF15	0.26	-1.0
11,127	-		GFF15	0.26	-1.5
11,132	-		GFF15	0.27	-1.5
11,132	-		GFF15	0.27	+0.2
11,132	-		GFF15	0.27	+0.8
11,132	-		GFF15	0.27	+0.6
11,133	-		GFF15	0.27	-0.2
11,175	-		GFF15	0.36	-0.5
11,191	+		GFF15	0.39	-0.6
11,191	+		GFF15	0.39	-0.7
11,232	-		GFF15	0.47	-0.5
11,250	-		GFF15	0.50	+0.2
11,264	-		GFF15	0.53	-0.2
11,303	+		GFF15	0.61	+0.6
11,311	-		GFF15	0.62	+0.0
11,312	+		GFF15	0.63	-0.6
11,312	+		GFF15	0.63	+0.0
11,318	+		GFF15	0.64	-2.9
11,318	+		GFF15	0.64	+0.1
11,318	+		GFF15	0.64	-1.2
11,318	+		GFF15	0.64	-1.5
11,318	+		GFF15	0.64	-1.3
11,326	-		GFF15	0.65	+0.2
11,326	-		GFF15	0.65	-1.6
11,326	-		GFF15	0.65	+0.9
11,326	-		GFF15	0.65	-1.4
11,326	-		GFF15	0.65	-0.8
11,326	-		GFF15	0.65	+0.0
11,326	-		GFF15	0.65	-0.1
11,326	-		GFF15	0.65	+0.9
11,333	+		GFF15	0.67	-1.2
11,333	+		GFF15	0.67	-0.8
11,337	-		GFF15	0.67	+0.8
11,380	+		GFF15	0.76	-1.5
11,388	-		GFF15	0.77	+0.2
11,393	+		GFF15	0.78	+0.5
11,404	+		GFF15	0.81	-0.9
11,414	-		GFF15	0.83	-0.9
11,424	-		GFF15	0.85	-1.8
11,424	-		GFF15	0.85	-0.7
11,426	+		GFF15	0.85	-1.2
11,444	+		GFF15	0.88	+0.5
11,444	+		GFF15	0.88	+0.1
11,445	-		GFF15	0.89	-2.1
11,452	-				-0.6
11,452	-				+1.8
11,461	+				+0.6
11,467	+				+0.1
11,469	-				+0.7
11,472	+				+0.0
11,472	+				+0.6
11,472	+				-0.7
11,472	+				+0.9
11,472	+				-1.4
11,472	+				+0.1
11,472	+				-0.5
11,472	+				+2.2
11,472	+				-2.1
11,475	-				+0.7
11,480	-				-1.1
11,480	-				-1.5
11,480	-				-0.6
11,480	-				-1.2
11,480	-				-1.4
11,480	-				+0.1
11,480	-				-0.5
11,480	-				-1.6
11,518	-				-2.1
11,531	-				-0.2
11,561	+		GFF16	0.17	-0.9
11,562	+		GFF16	0.18	-1.2
11,562	-		GFF16	0.18	+1.2
11,582	+		GFF16	0.24	-1.5
11,592	+		GFF16	0.27	-1.1
11,600	-		GFF16	0.29	+0.1
11,600	-		GFF16	0.29	+0.0
11,614	+		GFF16	0.34	+0.7
11,614	+		GFF16	0.34	-0.2
11,622	-		GFF16	0.36	+0.2
11,626	+		GFF16	0.37	-0.8
11,626	+		GFF16	0.37	-0.9
11,626	+		GFF16	0.37	-0.2
11,626	+		GFF16	0.37	+0.3
11,627	-		GFF16	0.38	-2.1
11,631	+		GFF16	0.39	+1.1
11,634	-		GFF16	0.40	+0.1
11,634	-		GFF16	0.40	-1.8
11,634	-		GFF16	0.40	-1.4
11,641	+		GFF16	0.42	-0.2
11,650	-		GFF16	0.45	+0.1
11,654	-		GFF16	0.46	-1.4
11,669	-		GFF16	0.51	-0.3
11,669	-		GFF16	0.51	+0.5
11,692	+		GFF16	0.58	+1.0
11,710	-		GFF16	0.63	-0.2
11,715	-		GFF16	0.65	-0.1
11,721	+		GFF16	0.67	+0.3
11,758	-		GFF16	0.78	-0.1
11,758	-		GFF16	0.78	+1.0
11,758	-		GFF16	0.78	+0.2
11,784	-		GFF16	0.86	+0.3
11,793	+		GFF16	0.89	-1.1
11,808	+				-0.6
11,823	+				-0.4
11,829	+				-2.3
11,850	+				-2.5
11,861	+				-1.2
11,869	-				-1.8
11,931	-		GFF17	0.24	-1.5
11,936	+		GFF17	0.25	-0.5
11,961	-		GFF17	0.30	-0.1
11,974	-		GFF17	0.33	-0.1
12,068	-		GFF17	0.54	-0.5
12,092	+		GFF17	0.59	-1.6
12,105	+		GFF17	0.62	+0.8
12,178	-		GFF17	0.78	-2.4
12,178	-		GFF17	0.78	+0.2
12,203	-		GFF17	0.84	+0.6
12,219	+		GFF17	0.88	-0.1
12,227	-		GFF17	0.89	+0.2
12,229	+		GFF17	0.90	+2.2
12,229	+		GFF17	0.90	+0.7
12,230	+				+0.0
12,238	+				-2.1
12,238	+				-0.1
12,239	+				-0.1
12,246	-				-0.8
12,247	-				+1.6
12,251	+				+0.5
12,259	-				-0.1
12,264	-				+1.6
12,266	+				-0.7
12,266	+				-0.8
12,266	+				-1.6
12,288	+				-0.3
12,297	-				+0.7
12,301	+				+0.9
12,309	-				-2.5
12,309	-				-1.5
12,321	+		GFF18	0.13	+0.3
12,329	-		GFF18	0.15	+0.1
12,329	-		GFF18	0.15	+1.0
12,332	+		GFF18	0.16	-0.2
12,340	+		GFF18	0.18	+0.3
12,345	+		GFF18	0.20	-2.6
12,348	-		GFF18	0.21	+0.5
12,358	-		GFF18	0.23	-1.2
12,378	+		GFF18	0.29	+0.5
12,378	+		GFF18	0.29	-0.8
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12,378	+		GFF18	0.29	-1.5
12,383	+		GFF18	0.30	+0.1
12,386	-		GFF18	0.31	+0.3
12,386	-		GFF18	0.31	+0.8
12,386	-		GFF18	0.31	-0.7
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12,391	-		GFF18	0.33	-1.2
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12,394	+		GFF18	0.33	-1.7
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12,403	-		GFF18	0.36	+0.3
12,403	-		GFF18	0.36	-0.6
12,408	-		GFF18	0.37	-1.6
12,418	+		GFF18	0.40	-0.2
12,426	-		GFF18	0.42	+0.1
12,426	-		GFF18	0.42	-0.8
12,426	-		GFF18	0.42	-0.4
12,426	-		GFF18	0.42	-1.8
12,432	-		GFF18	0.44	-0.6
12,443	-		GFF18	0.47	+0.2
12,444	-		GFF18	0.47	-1.1