Strain Fitness in Sphingobium sp. HT1-2 around GFF1457

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,484,847	+		GFF1456	0.50	+0.3
1,484,855	+		GFF1456	0.50	+0.2
1,484,855	+		GFF1456	0.50	-0.4
1,484,857	+		GFF1456	0.50	+0.7
1,484,863	-		GFF1456	0.50	-0.2
1,484,863	-		GFF1456	0.50	-0.3
1,484,863	-		GFF1456	0.50	-0.3
1,484,881	-		GFF1456	0.51	+0.9
1,484,896	+		GFF1456	0.52	-0.8
1,484,916	+		GFF1456	0.53	-1.2
1,484,931	-		GFF1456	0.54	-1.7
1,484,953	-		GFF1456	0.55	-1.6
1,484,968	+		GFF1456	0.56	-0.5
1,484,968	+		GFF1456	0.56	+0.0
1,484,968	-		GFF1456	0.56	-0.1
1,484,976	-		GFF1456	0.56	+1.2
1,484,992	+		GFF1456	0.57	+0.8
1,485,021	-		GFF1456	0.59	+0.4
1,485,032	-		GFF1456	0.59	-0.3
1,485,032	-		GFF1456	0.59	+0.3
1,485,040	-		GFF1456	0.60	+0.2
1,485,058	+		GFF1456	0.61	+0.6
1,485,076	+		GFF1456	0.62	-0.8
1,485,086	-		GFF1456	0.62	-1.6
1,485,094	+		GFF1456	0.63	-0.1
1,485,109	-		GFF1456	0.63	+0.5
1,485,132	-		GFF1456	0.65	-0.7
1,485,142	+		GFF1456	0.65	-0.8
1,485,142	+		GFF1456	0.65	-1.3
1,485,145	+		GFF1456	0.65	+0.2
1,485,153	-		GFF1456	0.66	-0.7
1,485,159	+		GFF1456	0.66	-0.2
1,485,159	+		GFF1456	0.66	-1.5
1,485,161	-		GFF1456	0.66	+1.1
1,485,167	-		GFF1456	0.67	-1.7
1,485,167	-		GFF1456	0.67	+0.6
1,485,168	-		GFF1456	0.67	+1.6
1,485,169	+		GFF1456	0.67	+0.8
1,485,169	+		GFF1456	0.67	-0.3
1,485,169	+		GFF1456	0.67	-0.1
1,485,169	+		GFF1456	0.67	+0.1
1,485,169	+		GFF1456	0.67	-2.1
1,485,169	+		GFF1456	0.67	+0.1
1,485,169	+		GFF1456	0.67	-1.4
1,485,169	+		GFF1456	0.67	-0.0
1,485,172	-		GFF1456	0.67	+1.3
1,485,172	-		GFF1456	0.67	+1.3
1,485,172	-		GFF1456	0.67	+1.4
1,485,172	-		GFF1456	0.67	-0.3
1,485,174	+		GFF1456	0.67	+0.7
1,485,177	-		GFF1456	0.67	-0.3
1,485,177	-		GFF1456	0.67	+0.9
1,485,177	-		GFF1456	0.67	-0.7
1,485,177	-		GFF1456	0.67	-0.7
1,485,177	-		GFF1456	0.67	+1.6
1,485,177	-		GFF1456	0.67	+0.6
1,485,177	-		GFF1456	0.67	-0.5
1,485,177	-		GFF1456	0.67	-0.7
1,485,177	-		GFF1456	0.67	-0.2
1,485,177	-		GFF1456	0.67	-0.8
1,485,177	-		GFF1456	0.67	-0.8
1,485,177	-		GFF1456	0.67	-0.6
1,485,182	-		GFF1456	0.67	+0.6
1,485,201	+		GFF1456	0.68	-1.3
1,485,201	+		GFF1456	0.68	-0.4
1,485,209	-		GFF1456	0.69	-0.7
1,485,226	+		GFF1456	0.70	-0.4
1,485,228	-		GFF1456	0.70	+1.9
1,485,234	+		GFF1456	0.70	+0.4
1,485,238	-		GFF1456	0.70	-0.1
1,485,260	+		GFF1456	0.71	+0.4
1,485,263	-		GFF1456	0.72	+1.5
1,485,265	+		GFF1456	0.72	+0.7
1,485,267	-		GFF1456	0.72	+0.8
1,485,273	-		GFF1456	0.72	-1.9
1,485,273	-		GFF1456	0.72	-0.1
1,485,273	-		GFF1456	0.72	+0.4
1,485,289	+		GFF1456	0.73	-1.1
1,485,297	-		GFF1456	0.73	-1.9
1,485,303	-		GFF1456	0.74	-0.8
1,485,326	+		GFF1456	0.75	-0.9
1,485,326	+		GFF1456	0.75	-0.8
1,485,326	+		GFF1456	0.75	+0.0
1,485,326	+		GFF1456	0.75	+0.8
1,485,326	+		GFF1456	0.75	-0.1
1,485,334	-		GFF1456	0.75	+0.3
1,485,334	-		GFF1456	0.75	-0.0
1,485,334	-		GFF1456	0.75	+1.4
1,485,334	-		GFF1456	0.75	-1.4
1,485,334	-		GFF1456	0.75	-0.7
1,485,334	-		GFF1456	0.75	+0.4
1,485,339	-		GFF1456	0.76	+1.3
1,485,347	+		GFF1456	0.76	-0.4
1,485,352	+		GFF1456	0.76	+0.1
1,485,352	+		GFF1456	0.76	-0.7
1,485,355	-		GFF1456	0.76	+0.1
1,485,355	-		GFF1456	0.76	-1.5
1,485,360	-		GFF1456	0.77	-1.6
1,485,360	-		GFF1456	0.77	-2.2
1,485,360	-		GFF1456	0.77	-0.7
1,485,379	+		GFF1456	0.78	+0.1
1,485,399	+		GFF1456	0.79	-1.5
1,485,404	+		GFF1456	0.79	+0.0
1,485,413	-		GFF1456	0.80	+1.2
1,485,455	+		GFF1456	0.82	+0.9
1,485,455	+		GFF1456	0.82	-0.5
1,485,463	-		GFF1456	0.82	-0.1
1,485,486	+		GFF1456	0.83	+0.1
1,485,494	-		GFF1456	0.84	-0.4
1,485,494	-		GFF1456	0.84	-0.7
1,485,494	-		GFF1456	0.84	-0.3
1,485,555	+		GFF1456	0.87	-2.2
1,485,560	+		GFF1456	0.87	+0.0
1,485,561	-		GFF1456	0.87	+0.4
1,485,595	+		GFF1456	0.89	-1.7
1,485,595	+		GFF1456	0.89	+0.1
1,485,595	+		GFF1456	0.89	+0.3
1,485,603	-		GFF1456	0.90	+0.1
1,485,608	+		GFF1456	0.90	+0.6
1,485,613	+				-0.8
1,485,616	-				+1.2
1,485,621	-				-2.4
1,485,633	+				-0.9
1,485,638	+				-0.6
1,485,643	+				+0.8
1,485,646	-				-1.8
1,485,648	+				-0.6
1,485,649	+				-0.2
1,485,651	-				-0.5
1,485,657	-				+1.4
1,485,661	-				-1.9
1,485,663	-				+1.2
1,485,680	+				-2.1
1,485,680	+				+1.0
1,485,680	+				-1.3
1,485,680	+				-0.8
1,485,687	-				+1.3
1,485,688	-				+1.3
1,485,688	-				-1.5
1,485,688	-				-0.6
1,485,688	-				+0.4
1,485,688	-				-0.6
1,485,688	-				+0.9
1,485,695	-				+0.5
1,485,697	-				+0.0
1,485,708	+				-0.9
1,485,724	+				-1.3
1,485,724	+				+0.6
1,485,724	+				-1.2
1,485,724	+				-0.1
1,485,732	-				-1.3
1,485,732	-				+0.0
1,485,732	-				-0.1
1,485,736	+				-0.5
1,485,769	-				-0.1
1,485,778	+				-0.6
1,485,784	-				+1.2
1,485,822	+				+0.4
1,485,830	-				-0.5
1,485,830	-				-0.3
1,485,832	+				-0.6
1,485,840	-				-2.6
1,485,862	+				+0.5
1,485,865	-				+0.1
1,485,865	-				-0.8
1,485,865	-				-0.3
1,485,865	-				+0.7
1,485,894	-		GFF1457	0.14	+0.0
1,485,895	-		GFF1457	0.14	+0.9
1,485,895	-		GFF1457	0.14	-0.3
1,485,895	-		GFF1457	0.14	-0.9
1,485,895	-		GFF1457	0.14	+0.6
1,485,895	-		GFF1457	0.14	+0.9
1,485,895	-		GFF1457	0.14	+0.2
1,485,910	+		GFF1457	0.18	-1.0
1,485,910	+		GFF1457	0.18	-0.6
1,485,910	+		GFF1457	0.18	-0.5
1,485,910	+		GFF1457	0.18	+1.3
1,485,910	+		GFF1457	0.18	-0.4
1,485,910	+		GFF1457	0.18	+0.6
1,485,918	-		GFF1457	0.20	+0.5
1,485,924	+		GFF1457	0.21	+0.0
1,485,957	+		GFF1457	0.30	+1.0
1,485,997	+		GFF1457	0.40	+0.1
1,486,004	+		GFF1457	0.42	-0.1
1,486,005	-		GFF1457	0.42	+0.6
1,486,026	+		GFF1457	0.47	-0.3
1,486,051	+		GFF1457	0.54	-2.3
1,486,056	+		GFF1457	0.55	-0.3
1,486,064	-		GFF1457	0.57	-0.1
1,486,068	-		GFF1457	0.58	+0.2
1,486,086	+		GFF1457	0.62	-0.2
1,486,139	+		GFF1457	0.76	+0.8
1,486,148	-		GFF1457	0.78	-0.9
1,486,191	+		GFF1457	0.89	-1.2
1,486,191	+		GFF1457	0.89	+0.5
1,486,199	-				-0.8
1,486,233	+				-0.4
1,486,233	+				-0.3