Strain Fitness in Sphingobium sp. HT1-2 around GFF1426

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,455,909	+		GFF1425	0.61	-0.6
1,455,935	+		GFF1425	0.62	-0.1
1,455,935	+		GFF1425	0.62	-1.3
1,455,935	+		GFF1425	0.62	+0.2
1,455,935	+		GFF1425	0.62	-1.0
1,455,935	+		GFF1425	0.62	-0.2
1,455,935	+		GFF1425	0.62	-0.7
1,455,943	-		GFF1425	0.63	+0.3
1,455,943	-		GFF1425	0.63	+0.4
1,455,969	+		GFF1425	0.64	+0.3
1,455,995	+		GFF1425	0.65	-2.7
1,455,996	+		GFF1425	0.65	+0.2
1,455,996	+		GFF1425	0.65	-0.1
1,456,014	-		GFF1425	0.66	-1.0
1,456,023	+		GFF1425	0.66	+0.3
1,456,028	+		GFF1425	0.67	-1.9
1,456,028	+		GFF1425	0.67	+1.0
1,456,033	+		GFF1425	0.67	-0.3
1,456,036	-		GFF1425	0.67	-0.7
1,456,050	-		GFF1425	0.68	-0.4
1,456,056	+		GFF1425	0.68	+0.1
1,456,060	+		GFF1425	0.68	+0.4
1,456,064	-		GFF1425	0.68	-0.8
1,456,065	+		GFF1425	0.68	-0.3
1,456,068	-		GFF1425	0.69	-0.8
1,456,081	+		GFF1425	0.69	-0.7
1,456,103	-		GFF1425	0.70	-2.1
1,456,109	-		GFF1425	0.70	-1.9
1,456,109	-		GFF1425	0.70	+0.5
1,456,112	+		GFF1425	0.71	-0.6
1,456,121	-		GFF1425	0.71	-0.6
1,456,134	-		GFF1425	0.72	-0.5
1,456,158	-		GFF1425	0.73	+0.7
1,456,185	-		GFF1425	0.74	+1.6
1,456,219	-		GFF1425	0.75	-2.8
1,456,232	-		GFF1425	0.76	-1.7
1,456,232	-		GFF1425	0.76	+0.2
1,456,256	+		GFF1425	0.77	+0.0
1,456,264	-		GFF1425	0.78	-0.2
1,456,291	-		GFF1425	0.79	+0.3
1,456,327	+		GFF1425	0.80	-1.0
1,456,334	+		GFF1425	0.81	+1.9
1,456,346	+		GFF1425	0.81	-0.1
1,456,359	+		GFF1425	0.82	+0.1
1,456,359	+		GFF1425	0.82	-1.3
1,456,364	+		GFF1425	0.82	+0.1
1,456,372	-		GFF1425	0.82	+0.7
1,456,388	+		GFF1425	0.83	+0.2
1,456,396	-		GFF1425	0.84	+0.4
1,456,450	-		GFF1425	0.86	-0.5
1,456,454	-		GFF1425	0.86	-0.8
1,456,456	+		GFF1425	0.86	-1.4
1,456,459	-		GFF1425	0.86	+0.7
1,456,471	+		GFF1425	0.87	-1.3
1,456,512	+		GFF1425	0.89	-0.6
1,456,512	+		GFF1425	0.89	+0.6
1,456,512	+		GFF1425	0.89	+0.2
1,456,512	+		GFF1425	0.89	+1.2
1,456,520	-		GFF1425	0.89	-1.3
1,456,520	-		GFF1425	0.89	-1.8
1,456,520	-		GFF1425	0.89	-0.2
1,456,530	+		GFF1425	0.90	-1.3
1,456,551	+				+0.4
1,456,559	-				-0.2
1,456,559	-				-2.1
1,456,570	+				-2.5
1,456,571	-				-2.0
1,456,578	-				+0.4
1,456,592	+				-1.1
1,456,600	-				-0.5
1,456,627	+				+0.2
1,456,635	-				-0.4
1,456,645	-				-1.0
1,456,645	-				+0.3
1,456,645	-				+1.5
1,456,647	+				-1.1
1,456,647	+				+0.0
1,456,647	+				-0.2
1,456,650	-				+0.2
1,456,655	-				+0.9
1,456,655	-				-0.5
1,456,655	-				-1.4
1,456,655	-				-1.0
1,456,655	-				+0.0
1,456,655	-				-1.5
1,456,655	-				+0.6
1,456,655	-				-0.3
1,456,739	-				+1.8
1,456,744	+				+0.7
1,456,747	-				+0.5
1,456,747	-				+0.2
1,456,747	-				-0.6
1,456,752	-				-0.6
1,456,752	-				-1.4
1,456,763	-				-0.3
1,456,831	+				+1.0
1,456,831	-				-1.8
1,456,839	-				-1.0
1,456,839	-				+0.4
1,456,857	-				-0.6
1,456,911	+				+0.6
1,456,913	-				-0.8
1,456,921	+				-1.8
1,456,929	-				+1.6
1,456,930	-				+0.1
1,456,984	+		GFF1426	0.21	-0.0
1,456,988	-		GFF1426	0.23	-2.4
1,457,005	-		GFF1426	0.27	-0.3
1,457,005	-		GFF1426	0.27	-2.1
1,457,029	+		GFF1426	0.34	+0.4
1,457,034	+		GFF1426	0.36	-0.9
1,457,059	+		GFF1426	0.43	+0.9
1,457,067	-		GFF1426	0.45	+0.3
1,457,067	-		GFF1426	0.45	-1.6
1,457,069	+		GFF1426	0.46	+0.3
1,457,070	+		GFF1426	0.46	-0.9
1,457,070	+		GFF1426	0.46	-1.4
1,457,077	+		GFF1426	0.48	-0.2
1,457,080	-		GFF1426	0.49	+1.1
1,457,080	-		GFF1426	0.49	-0.3
1,457,082	+		GFF1426	0.49	+0.5
1,457,082	+		GFF1426	0.49	+0.7
1,457,089	+		GFF1426	0.51	+0.6
1,457,098	+		GFF1426	0.54	-2.1
1,457,101	-		GFF1426	0.55	+0.1
1,457,101	-		GFF1426	0.55	-0.6
1,457,109	+		GFF1426	0.57	-1.6
1,457,109	+		GFF1426	0.57	+0.2
1,457,109	+		GFF1426	0.57	+0.3
1,457,117	-		GFF1426	0.59	+0.1
1,457,117	-		GFF1426	0.59	-0.4
1,457,138	-		GFF1426	0.65	+0.0
1,457,139	+		GFF1426	0.66	-0.4
1,457,139	+		GFF1426	0.66	-1.6
1,457,153	+		GFF1426	0.70	+0.4
1,457,155	-		GFF1426	0.70	-2.6
1,457,158	+		GFF1426	0.71	-0.7
1,457,161	-		GFF1426	0.72	+0.3
1,457,161	-		GFF1426	0.72	+1.0
1,457,208	-		GFF1426	0.85	-0.5
1,457,209	-		GFF1426	0.85	+0.4
1,457,221	+		GFF1426	0.89	-0.1
1,457,233	-				+0.2
1,457,236	+				-0.9
1,457,252	-				-0.6
1,457,307	+				-0.7
1,457,480	+				-0.4
1,457,499	+				+0.7
1,457,509	+				+1.4
1,457,509	+				-1.3
1,457,509	+				+1.2
1,457,565	+				-0.3
1,457,573	-				-2.0
1,457,576	+				-0.7
1,457,576	+				+0.3
1,457,576	+				-1.1
1,457,576	+				+1.3
1,457,584	-				-0.5
1,457,598	-				+0.3
1,457,615	-				-0.5
1,457,625	+				+1.5
1,457,633	-				-1.5
1,457,677	+				+0.2
1,457,677	+				+0.0
1,457,677	+				-0.0
1,457,677	+				-0.1
1,457,677	+				+0.9
1,457,677	+				-1.1
1,457,677	+				+0.9
1,457,677	+				-0.1
1,457,677	+				+1.2
1,457,680	-				+0.7
1,457,682	+				+0.6
1,457,685	-				-1.1
1,457,685	-				+0.5
1,457,685	-				-1.8
1,457,685	-				+0.2
1,457,685	-				+0.1
1,457,685	-				-0.3
1,457,685	-				-0.8
1,457,685	-				-2.3
1,457,685	-				-0.3
1,457,690	-				-1.4
1,457,690	-				-0.4
1,457,690	-				+0.2
1,457,690	-				-1.5
1,457,700	+				-1.0
1,457,712	-				-0.9
1,457,730	-				+0.6
1,457,808	+		GFF1428	0.12	-0.3
1,457,808	+		GFF1428	0.12	-1.6
1,457,808	+		GFF1428	0.12	-0.3
1,457,816	-		GFF1428	0.13	+0.4
1,457,816	-		GFF1428	0.13	-1.7
1,457,835	+		GFF1428	0.14	+0.9
1,457,840	+		GFF1428	0.15	-0.7
1,457,843	-		GFF1428	0.15	-0.8
1,457,843	-		GFF1428	0.15	-0.5
1,457,848	-		GFF1428	0.15	-0.5
1,457,848	-		GFF1428	0.15	-0.2
1,457,848	-		GFF1428	0.15	-1.0
1,457,848	-		GFF1428	0.15	+0.4
1,457,871	-		GFF1428	0.17	+1.3
1,457,873	+		GFF1428	0.17	-1.1
1,457,881	-		GFF1428	0.17	-0.6
1,457,881	-		GFF1428	0.17	+0.6
1,457,882	-		GFF1428	0.18	+0.2
1,457,898	+		GFF1428	0.19	-1.0
1,457,920	+		GFF1428	0.20	-3.3
1,457,928	-		GFF1428	0.21	+0.7
1,457,928	-		GFF1428	0.21	+0.0
1,457,933	-		GFF1428	0.21	+0.2
1,457,935	+		GFF1428	0.21	+0.6
1,457,935	+		GFF1428	0.21	+0.3
1,457,943	-		GFF1428	0.22	-2.3
1,457,963	+		GFF1428	0.23	-0.2
1,457,988	-		GFF1428	0.25	+0.9
1,457,993	+		GFF1428	0.25	-0.1
1,457,993	+		GFF1428	0.25	-1.9
1,458,011	+		GFF1428	0.27	+1.3
1,458,011	+		GFF1428	0.27	-0.1
1,458,011	+		GFF1428	0.27	+0.6
1,458,011	+		GFF1428	0.27	-1.1
1,458,011	+		GFF1428	0.27	-1.1
1,458,016	+		GFF1428	0.27	-0.9
1,458,016	+		GFF1428	0.27	-0.1
1,458,016	+		GFF1428	0.27	+1.2
1,458,016	+		GFF1428	0.27	-1.2
1,458,016	+		GFF1428	0.27	+0.4
1,458,016	+		GFF1428	0.27	+1.3
1,458,016	+		GFF1428	0.27	-1.4
1,458,019	-		GFF1428	0.27	-0.3
1,458,019	-		GFF1428	0.27	+0.5
1,458,022	+		GFF1428	0.28	+0.7
1,458,024	-		GFF1428	0.28	+0.1
1,458,024	-		GFF1428	0.28	-0.3
1,458,024	-		GFF1428	0.28	-1.2
1,458,024	-		GFF1428	0.28	-0.6
1,458,024	-		GFF1428	0.28	-0.7
1,458,024	-		GFF1428	0.28	-0.8
1,458,024	-		GFF1428	0.28	+0.3
1,458,024	-		GFF1428	0.28	+0.3
1,458,024	-		GFF1428	0.28	+1.2
1,458,024	-		GFF1428	0.28	-0.1
1,458,024	-		GFF1428	0.28	-0.0
1,458,024	-		GFF1428	0.28	-2.0
1,458,030	-		GFF1428	0.28	+1.4
1,458,031	+		GFF1428	0.28	-0.3
1,458,044	+		GFF1428	0.29	+0.7
1,458,059	-		GFF1428	0.30	+1.1
1,458,097	+		GFF1428	0.33	+0.4
1,458,100	-		GFF1428	0.33	-2.6
1,458,100	-		GFF1428	0.33	-0.1
1,458,105	-		GFF1428	0.33	-0.4
1,458,109	+		GFF1428	0.34	+0.7
1,458,109	+		GFF1428	0.34	+1.6
1,458,112	-		GFF1428	0.34	+0.4
1,458,117	-		GFF1428	0.34	-1.9
1,458,117	-		GFF1428	0.34	-1.0
1,458,117	-		GFF1428	0.34	-0.6
1,458,117	-		GFF1428	0.34	-0.1
1,458,117	-		GFF1428	0.34	+0.8
1,458,117	-		GFF1428	0.34	-0.9
1,458,117	-		GFF1428	0.34	+0.2
1,458,117	-		GFF1428	0.34	-0.7
1,458,121	+		GFF1428	0.35	-1.1
1,458,127	+		GFF1428	0.35	+0.6
1,458,129	-		GFF1428	0.35	+1.5
1,458,129	-		GFF1428	0.35	-0.7
1,458,135	-		GFF1428	0.36	+1.2
1,458,151	-		GFF1428	0.37	+0.7
1,458,165	+		GFF1428	0.38	-0.1
1,458,186	+		GFF1428	0.39	+0.0
1,458,204	-		GFF1428	0.41	-0.2
1,458,231	+		GFF1428	0.42	-0.7
1,458,231	+		GFF1428	0.42	-0.6
1,458,231	+		GFF1428	0.42	+0.4
1,458,231	+		GFF1428	0.42	+2.6
1,458,231	+		GFF1428	0.42	+0.9
1,458,231	+		GFF1428	0.42	+0.7
1,458,231	+		GFF1428	0.42	+1.6
1,458,231	+		GFF1428	0.42	+0.5
1,458,231	+		GFF1428	0.42	-2.4
1,458,231	+		GFF1428	0.42	+1.0
1,458,231	+		GFF1428	0.42	+0.1
1,458,239	-		GFF1428	0.43	+0.9
1,458,239	-		GFF1428	0.43	+0.2
1,458,239	-		GFF1428	0.43	-0.1
1,458,239	-		GFF1428	0.43	+0.3
1,458,239	-		GFF1428	0.43	+0.5
1,458,239	-		GFF1428	0.43	+0.4
1,458,239	-		GFF1428	0.43	+0.3
1,458,239	-		GFF1428	0.43	-2.4
1,458,250	-		GFF1428	0.44	+1.1