Strain Fitness in Sphingobium sp. HT1-2 around GFF1424

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,451,687	+				-0.3
1,451,687	+				+0.3
1,451,695	-				+0.9
1,451,719	-				+1.2
1,451,738	+				+0.0
1,451,763	-				+0.4
1,451,773	-				-0.7
1,451,790	+		GFF1423	0.12	-1.6
1,451,790	+		GFF1423	0.12	-0.4
1,451,798	-		GFF1423	0.12	-0.2
1,451,800	+		GFF1423	0.13	+1.4
1,451,803	-		GFF1423	0.13	-0.5
1,451,813	-		GFF1423	0.14	-1.8
1,451,819	+		GFF1423	0.15	-2.0
1,451,819	+		GFF1423	0.15	+0.6
1,451,827	-		GFF1423	0.16	+0.6
1,451,827	-		GFF1423	0.16	+1.0
1,451,827	-		GFF1423	0.16	+0.2
1,451,827	-		GFF1423	0.16	+0.6
1,451,827	-		GFF1423	0.16	+1.0
1,451,851	+		GFF1423	0.18	-0.3
1,451,851	+		GFF1423	0.18	-1.0
1,451,854	-		GFF1423	0.19	+0.6
1,451,859	-		GFF1423	0.19	+0.6
1,451,878	-		GFF1423	0.22	+0.6
1,451,916	-		GFF1423	0.26	+0.5
1,451,925	-		GFF1423	0.27	-1.0
1,451,930	-		GFF1423	0.28	-0.2
1,452,019	-		GFF1423	0.38	+0.6
1,452,021	+		GFF1423	0.38	-0.1
1,452,021	+		GFF1423	0.38	+0.9
1,452,036	+		GFF1423	0.40	+0.1
1,452,038	+		GFF1423	0.40	-0.7
1,452,038	+		GFF1423	0.40	-0.4
1,452,038	+		GFF1423	0.40	-0.0
1,452,066	+		GFF1423	0.43	+0.5
1,452,084	-		GFF1423	0.45	+0.3
1,452,092	-		GFF1423	0.46	+0.7
1,452,094	-		GFF1423	0.46	-1.3
1,452,111	-		GFF1423	0.48	-0.8
1,452,141	+		GFF1423	0.52	+0.1
1,452,141	+		GFF1423	0.52	+0.4
1,452,154	+		GFF1423	0.53	+0.6
1,452,185	+		GFF1423	0.57	+1.1
1,452,185	+		GFF1423	0.57	-0.5
1,452,193	-		GFF1423	0.58	+0.8
1,452,199	+		GFF1423	0.58	-0.6
1,452,200	+		GFF1423	0.58	+0.1
1,452,200	+		GFF1423	0.58	+0.4
1,452,232	-		GFF1423	0.62	-0.2
1,452,252	+		GFF1423	0.64	-0.4
1,452,259	-		GFF1423	0.65	-1.6
1,452,260	-		GFF1423	0.65	+1.1
1,452,274	-		GFF1423	0.67	-0.8
1,452,274	-		GFF1423	0.67	+0.2
1,452,277	+		GFF1423	0.67	+0.9
1,452,277	+		GFF1423	0.67	-1.7
1,452,291	+		GFF1423	0.69	-0.5
1,452,299	-		GFF1423	0.70	-2.2
1,452,299	-		GFF1423	0.70	+0.1
1,452,299	-		GFF1423	0.70	-1.0
1,452,309	-		GFF1423	0.71	-1.4
1,452,323	+		GFF1423	0.72	-0.8
1,452,323	+		GFF1423	0.72	-1.3
1,452,325	+		GFF1423	0.73	+0.6
1,452,382	+		GFF1423	0.79	-0.3
1,452,501	-				+0.4
1,452,527	-				-0.8
1,452,629	+				+0.8
1,452,629	+				-0.5
1,452,629	+				+0.6
1,452,629	+				-0.1
1,452,643	+				+0.3
1,452,812	-				-3.2
1,452,833	-				-2.6
1,452,856	+				-2.0
1,452,906	-		GFF1424	0.12	-2.6
1,452,935	+		GFF1424	0.14	-1.8
1,452,949	+		GFF1424	0.15	-0.1
1,452,966	+		GFF1424	0.15	-1.1
1,452,966	+		GFF1424	0.15	-4.0
1,452,969	-		GFF1424	0.16	-2.6
1,452,974	-		GFF1424	0.16	-0.6
1,452,974	-		GFF1424	0.16	+0.4
1,453,027	+		GFF1424	0.19	-1.5
1,453,027	+		GFF1424	0.19	-3.2
1,453,033	-		GFF1424	0.19	+0.1
1,453,090	-		GFF1424	0.22	-2.7
1,453,123	-		GFF1424	0.24	-3.3
1,453,179	-		GFF1424	0.27	-0.3
1,453,201	+		GFF1424	0.28	-2.3
1,453,239	-		GFF1424	0.30	-1.3
1,453,263	+		GFF1424	0.31	-2.1
1,453,268	+		GFF1424	0.32	-1.3
1,453,273	+		GFF1424	0.32	-2.2
1,453,276	-		GFF1424	0.32	-2.3
1,453,276	-		GFF1424	0.32	-1.0
1,453,343	-		GFF1424	0.36	-1.4
1,453,349	+		GFF1424	0.36	-1.5
1,453,416	+		GFF1424	0.40	-2.2
1,453,416	+		GFF1424	0.40	-1.4
1,453,416	+		GFF1424	0.40	-2.3
1,453,416	+		GFF1424	0.40	-0.5
1,453,424	-		GFF1424	0.40	-1.6
1,453,424	-		GFF1424	0.40	-3.5
1,453,434	+		GFF1424	0.41	-1.6
1,453,437	-		GFF1424	0.41	-0.7
1,453,442	-		GFF1424	0.41	-0.5
1,453,442	-		GFF1424	0.41	-2.1
1,453,445	-		GFF1424	0.41	-2.1
1,453,455	-		GFF1424	0.42	-2.2
1,453,477	-		GFF1424	0.43	-0.3
1,453,495	-		GFF1424	0.44	-1.6
1,453,495	-		GFF1424	0.44	-2.0
1,453,495	-		GFF1424	0.44	-0.3
1,453,495	-		GFF1424	0.44	-3.1
1,453,513	+		GFF1424	0.45	-1.4
1,453,518	+		GFF1424	0.45	-1.8
1,453,521	-		GFF1424	0.45	-1.8
1,453,523	+		GFF1424	0.45	-0.9
1,453,526	-		GFF1424	0.46	-1.6
1,453,531	-		GFF1424	0.46	-1.1
1,453,531	-		GFF1424	0.46	-1.6
1,453,531	-		GFF1424	0.46	-4.0
1,453,531	-		GFF1424	0.46	-1.5
1,453,531	-		GFF1424	0.46	-1.1
1,453,531	-		GFF1424	0.46	-0.8
1,453,542	+		GFF1424	0.46	-0.0
1,453,547	+		GFF1424	0.47	-4.3
1,453,555	-		GFF1424	0.47	-3.1
1,453,591	+		GFF1424	0.49	-1.9
1,453,591	+		GFF1424	0.49	-3.0
1,453,602	+		GFF1424	0.50	-3.3
1,453,610	-		GFF1424	0.50	-3.3
1,453,612	+		GFF1424	0.50	-3.1
1,453,612	+		GFF1424	0.50	-1.1
1,453,612	+		GFF1424	0.50	-1.3
1,453,612	+		GFF1424	0.50	-2.7
1,453,620	-		GFF1424	0.51	-1.0
1,453,620	-		GFF1424	0.51	-1.8
1,453,620	-		GFF1424	0.51	-2.1
1,453,632	+		GFF1424	0.51	-3.4
1,453,636	+		GFF1424	0.52	-1.7
1,453,640	-		GFF1424	0.52	-0.9
1,453,687	+		GFF1424	0.54	-0.6
1,453,693	+		GFF1424	0.55	-1.5
1,453,706	+		GFF1424	0.55	-1.6
1,453,711	+		GFF1424	0.56	-1.0
1,453,714	-		GFF1424	0.56	+0.9
1,453,719	-		GFF1424	0.56	-1.9
1,453,723	+		GFF1424	0.56	-0.8
1,453,724	-		GFF1424	0.56	-1.1
1,453,765	+		GFF1424	0.59	-2.6
1,453,797	-		GFF1424	0.60	-1.6
1,453,797	-		GFF1424	0.60	-0.6
1,453,810	+		GFF1424	0.61	-0.1
1,453,841	+		GFF1424	0.63	-0.6
1,453,841	+		GFF1424	0.63	-1.5
1,453,841	+		GFF1424	0.63	+0.1
1,453,841	+		GFF1424	0.63	-0.3
1,453,841	+		GFF1424	0.63	-1.1
1,453,874	+		GFF1424	0.64	-0.1
1,453,874	+		GFF1424	0.64	-1.5
1,453,874	+		GFF1424	0.64	-1.5
1,453,916	+		GFF1424	0.67	-3.1
1,453,948	-		GFF1424	0.68	-2.5
1,453,954	-		GFF1424	0.69	-3.6
1,453,978	-		GFF1424	0.70	-3.0
1,453,992	-		GFF1424	0.71	-1.6
1,454,008	-		GFF1424	0.72	-0.8
1,454,012	+		GFF1424	0.72	-3.2
1,454,012	+		GFF1424	0.72	-1.7
1,454,012	+		GFF1424	0.72	-1.5
1,454,020	-		GFF1424	0.72	-1.8
1,454,020	-		GFF1424	0.72	-1.7
1,454,041	-		GFF1424	0.73	-1.3
1,454,041	-		GFF1424	0.73	-1.0
1,454,087	-		GFF1424	0.76	-1.4
1,454,123	-		GFF1424	0.78	-1.8
1,454,125	+		GFF1424	0.78	-1.6
1,454,196	+		GFF1424	0.82	-3.1
1,454,197	+		GFF1424	0.82	+0.3
1,454,199	-		GFF1424	0.82	-2.2
1,454,199	-		GFF1424	0.82	-1.5
1,454,209	+		GFF1424	0.82	-2.6
1,454,217	-		GFF1424	0.83	-2.2
1,454,222	-		GFF1424	0.83	-0.1
1,454,246	-		GFF1424	0.84	-1.8
1,454,268	-		GFF1424	0.86	-2.4
1,454,271	+		GFF1424	0.86	-2.9
1,454,307	-		GFF1424	0.88	-1.8
1,454,307	-		GFF1424	0.88	-1.5
1,454,313	+		GFF1424	0.88	-3.0
1,454,343	+		GFF1424	0.90	-2.1
1,454,364	+				-2.8
1,454,369	+				-1.4
1,454,372	-				-2.4
1,454,372	-				-1.4
1,454,372	-				-1.8
1,454,374	+				-1.8
1,454,387	-				-3.0
1,454,389	+				-1.4
1,454,397	-				-2.5
1,454,412	-				-0.7
1,454,471	-				-1.5
1,454,471	-				-1.5
1,454,657	+				+0.7
1,454,657	+				+0.5
1,454,657	+				-0.1
1,454,657	+				-0.0
1,454,657	+				+0.3
1,454,657	+				+0.2
1,454,657	+				+0.2
1,454,657	+				+1.9
1,454,657	+				+0.3
1,454,657	+				+1.1
1,454,657	+				-2.6
1,454,657	+				+1.5
1,454,657	+				+0.4
1,454,657	+				-0.1
1,454,657	+				+0.2
1,454,665	-				+0.4
1,454,665	-				-0.0
1,454,665	-				+0.3
1,454,665	-				-1.4
1,454,665	-				+0.3
1,454,685	-				-0.8
1,454,716	+				-0.6
1,454,724	-				+0.8
1,454,746	+				-1.2
1,454,756	+				+1.2
1,454,764	-				-0.2
1,454,789	-				+1.3
1,454,837	+		GFF1425	0.12	-2.4
1,454,838	+		GFF1425	0.12	+0.2
1,454,838	+		GFF1425	0.12	+1.1
1,454,843	+		GFF1425	0.12	-1.5
1,454,843	+		GFF1425	0.12	+0.2
1,454,845	-		GFF1425	0.12	-0.1
1,454,856	-		GFF1425	0.13	+0.7
1,454,869	+		GFF1425	0.13	-0.1
1,454,870	-		GFF1425	0.13	-2.0
1,454,881	-		GFF1425	0.14	+0.7
1,454,892	+		GFF1425	0.15	-1.6
1,454,900	-		GFF1425	0.15	+0.6
1,454,905	-		GFF1425	0.15	+1.1
1,454,905	-		GFF1425	0.15	+0.3
1,454,907	+		GFF1425	0.15	+1.4
1,454,945	+		GFF1425	0.17	-0.5
1,454,960	-		GFF1425	0.18	+0.8
1,454,999	-		GFF1425	0.19	+0.3
1,455,013	+		GFF1425	0.20	-0.7
1,455,021	-		GFF1425	0.20	+0.0
1,455,021	-		GFF1425	0.20	+0.1
1,455,062	+		GFF1425	0.22	+2.1
1,455,099	+		GFF1425	0.24	+0.9
1,455,140	-		GFF1425	0.26	-0.1
1,455,145	+		GFF1425	0.26	-1.1
1,455,170	+		GFF1425	0.27	-0.6
1,455,175	+		GFF1425	0.28	-0.4
1,455,200	+		GFF1425	0.29	+1.0
1,455,206	+		GFF1425	0.29	+0.1
1,455,206	+		GFF1425	0.29	+0.5
1,455,219	-		GFF1425	0.30	+0.1
1,455,238	+		GFF1425	0.30	-0.9
1,455,246	+		GFF1425	0.31	+1.1
1,455,260	+		GFF1425	0.31	+0.5
1,455,265	+		GFF1425	0.32	+0.6
1,455,278	-		GFF1425	0.32	-0.3
1,455,279	-		GFF1425	0.32	+1.6
1,455,288	-		GFF1425	0.33	-0.1
1,455,296	+		GFF1425	0.33	-1.5
1,455,343	-		GFF1425	0.35	-0.7
1,455,366	+		GFF1425	0.36	+0.4
1,455,374	-		GFF1425	0.37	+0.4
1,455,374	-		GFF1425	0.37	+0.2
1,455,374	-		GFF1425	0.37	-0.5
1,455,376	+		GFF1425	0.37	-0.3
1,455,380	-		GFF1425	0.37	-1.5
1,455,400	-		GFF1425	0.38	-0.1
1,455,407	+		GFF1425	0.38	+0.3
1,455,435	+		GFF1425	0.39	+0.5
1,455,443	-		GFF1425	0.40	+0.5
1,455,443	-		GFF1425	0.40	-0.1
1,455,443	-		GFF1425	0.40	+0.1
1,455,451	+		GFF1425	0.40	-2.5
1,455,527	+		GFF1425	0.44	+0.4
1,455,530	-		GFF1425	0.44	+0.4
1,455,532	+		GFF1425	0.44	-1.6