Strain Fitness in Sphingobium sp. HT1-2 around GFF1416

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,445,990	-		GFF1415	0.39	-0.1
1,445,990	-		GFF1415	0.39	+1.0
1,445,990	-		GFF1415	0.39	-0.1
1,445,990	-		GFF1415	0.39	-0.3
1,445,990	-		GFF1415	0.39	+0.8
1,445,990	-		GFF1415	0.39	+0.3
1,445,990	-		GFF1415	0.39	-0.2
1,445,990	-		GFF1415	0.39	-1.1
1,446,010	+		GFF1415	0.40	+1.0
1,446,014	+		GFF1415	0.40	-0.6
1,446,024	+		GFF1415	0.41	-1.0
1,446,032	-		GFF1415	0.42	-1.4
1,446,033	-		GFF1415	0.42	-0.8
1,446,041	+		GFF1415	0.42	-0.5
1,446,041	+		GFF1415	0.42	+1.0
1,446,041	+		GFF1415	0.42	-0.4
1,446,041	+		GFF1415	0.42	+1.2
1,446,041	+		GFF1415	0.42	-0.4
1,446,041	+		GFF1415	0.42	+0.6
1,446,041	+		GFF1415	0.42	-0.2
1,446,041	+		GFF1415	0.42	+0.2
1,446,041	+		GFF1415	0.42	-0.0
1,446,041	-		GFF1415	0.42	-0.4
1,446,049	-		GFF1415	0.43	+0.6
1,446,049	-		GFF1415	0.43	-1.8
1,446,049	-		GFF1415	0.43	+0.2
1,446,049	-		GFF1415	0.43	-2.5
1,446,049	-		GFF1415	0.43	-2.5
1,446,049	-		GFF1415	0.43	+0.2
1,446,049	-		GFF1415	0.43	-0.8
1,446,049	-		GFF1415	0.43	-0.9
1,446,049	-		GFF1415	0.43	+1.3
1,446,061	+		GFF1415	0.43	-1.0
1,446,061	+		GFF1415	0.43	+0.8
1,446,069	-		GFF1415	0.44	+0.0
1,446,069	-		GFF1415	0.44	-1.6
1,446,069	-		GFF1415	0.44	-0.8
1,446,103	+		GFF1415	0.46	-0.4
1,446,103	+		GFF1415	0.46	+0.0
1,446,103	+		GFF1415	0.46	-0.2
1,446,103	+		GFF1415	0.46	+0.6
1,446,103	+		GFF1415	0.46	-0.1
1,446,103	+		GFF1415	0.46	-1.8
1,446,103	+		GFF1415	0.46	-1.4
1,446,103	+		GFF1415	0.46	-1.7
1,446,103	+		GFF1415	0.46	+0.5
1,446,103	+		GFF1415	0.46	-0.1
1,446,103	+		GFF1415	0.46	+0.3
1,446,103	+		GFF1415	0.46	-1.4
1,446,104	+		GFF1415	0.46	+0.6
1,446,105	-		GFF1415	0.46	-0.3
1,446,105	-		GFF1415	0.46	-0.7
1,446,105	-		GFF1415	0.46	-0.8
1,446,111	-		GFF1415	0.46	+0.6
1,446,111	-		GFF1415	0.46	-0.3
1,446,111	-		GFF1415	0.46	-1.2
1,446,111	-		GFF1415	0.46	-1.1
1,446,111	-		GFF1415	0.46	-1.1
1,446,111	-		GFF1415	0.46	-1.3
1,446,111	-		GFF1415	0.46	-1.8
1,446,111	-		GFF1415	0.46	-0.9
1,446,133	+		GFF1415	0.48	+0.7
1,446,147	-		GFF1415	0.49	-0.2
1,446,178	+		GFF1415	0.50	-2.4
1,446,178	+		GFF1415	0.50	+0.2
1,446,182	+		GFF1415	0.51	+0.2
1,446,187	+		GFF1415	0.51	-0.6
1,446,190	-		GFF1415	0.51	+0.7
1,446,211	-		GFF1415	0.52	+0.9
1,446,211	-		GFF1415	0.52	-1.1
1,446,211	-		GFF1415	0.52	+0.7
1,446,244	-		GFF1415	0.54	+0.8
1,446,252	+		GFF1415	0.55	-0.5
1,446,257	+		GFF1415	0.55	+0.1
1,446,257	+		GFF1415	0.55	+0.6
1,446,260	-		GFF1415	0.55	-0.1
1,446,260	-		GFF1415	0.55	+0.3
1,446,290	+		GFF1415	0.57	-0.9
1,446,298	-		GFF1415	0.58	-0.2
1,446,298	-		GFF1415	0.58	-0.8
1,446,300	+		GFF1415	0.58	+0.1
1,446,300	+		GFF1415	0.58	+0.2
1,446,306	-		GFF1415	0.58	-0.1
1,446,306	-		GFF1415	0.58	+0.5
1,446,313	-		GFF1415	0.59	+0.7
1,446,331	+		GFF1415	0.60	-0.9
1,446,331	+		GFF1415	0.60	-0.1
1,446,361	-		GFF1415	0.62	+0.0
1,446,368	+		GFF1415	0.62	-1.6
1,446,368	+		GFF1415	0.62	-2.2
1,446,368	+		GFF1415	0.62	-1.1
1,446,368	+		GFF1415	0.62	-0.4
1,446,368	+		GFF1415	0.62	-1.3
1,446,368	+		GFF1415	0.62	+0.6
1,446,368	+		GFF1415	0.62	+0.5
1,446,371	-		GFF1415	0.62	+0.2
1,446,376	-		GFF1415	0.63	-0.6
1,446,376	-		GFF1415	0.63	-1.2
1,446,376	-		GFF1415	0.63	+0.2
1,446,395	-		GFF1415	0.64	+0.9
1,446,434	-		GFF1415	0.66	-2.8
1,446,463	+		GFF1415	0.68	-1.1
1,446,464	+		GFF1415	0.68	-0.4
1,446,464	+		GFF1415	0.68	+0.3
1,446,464	+		GFF1415	0.68	+0.6
1,446,472	-		GFF1415	0.68	-0.9
1,446,481	+		GFF1415	0.69	+0.6
1,446,481	+		GFF1415	0.69	-1.1
1,446,481	+		GFF1415	0.69	+0.5
1,446,486	-		GFF1415	0.69	-0.2
1,446,489	-		GFF1415	0.69	+0.2
1,446,489	-		GFF1415	0.69	+1.9
1,446,489	-		GFF1415	0.69	+0.4
1,446,490	-		GFF1415	0.70	+1.2
1,446,490	-		GFF1415	0.70	+0.0
1,446,490	-		GFF1415	0.70	-1.4
1,446,507	+		GFF1415	0.71	-1.4
1,446,511	+		GFF1415	0.71	+0.4
1,446,512	-		GFF1415	0.71	-0.8
1,446,551	+		GFF1415	0.73	+0.3
1,446,551	-		GFF1415	0.73	-0.1
1,446,577	+		GFF1415	0.75	+0.4
1,446,577	+		GFF1415	0.75	-0.6
1,446,580	-		GFF1415	0.75	+0.1
1,446,585	-		GFF1415	0.75	+0.9
1,446,587	+		GFF1415	0.75	-1.1
1,446,595	-		GFF1415	0.76	-0.3
1,446,595	-		GFF1415	0.76	+0.2
1,446,595	-		GFF1415	0.76	-1.1
1,446,642	+		GFF1415	0.79	-0.6
1,446,674	+		GFF1415	0.81	+1.5
1,446,695	-		GFF1415	0.82	-0.1
1,446,710	+		GFF1415	0.83	-0.4
1,446,710	+		GFF1415	0.83	-1.2
1,446,710	+		GFF1415	0.83	-0.5
1,446,718	-		GFF1415	0.83	-0.7
1,446,718	-		GFF1415	0.83	-0.2
1,446,720	+		GFF1415	0.84	+1.4
1,446,728	+		GFF1415	0.84	+0.5
1,446,735	-		GFF1415	0.85	+1.5
1,446,736	-		GFF1415	0.85	+0.8
1,446,736	-		GFF1415	0.85	+0.4
1,446,747	-		GFF1415	0.85	-0.1
1,446,747	-		GFF1415	0.85	+1.1
1,446,756	+		GFF1415	0.86	+0.1
1,446,757	+		GFF1415	0.86	-1.3
1,446,757	+		GFF1415	0.86	+1.0
1,446,757	-		GFF1415	0.86	+0.2
1,446,761	+		GFF1415	0.86	+0.8
1,446,765	-		GFF1415	0.86	-0.1
1,446,792	+		GFF1415	0.88	-0.7
1,446,792	+		GFF1415	0.88	-0.4
1,446,792	+		GFF1415	0.88	+0.4
1,446,799	+		GFF1415	0.88	+0.6
1,446,800	-		GFF1415	0.89	-1.9
1,446,800	-		GFF1415	0.89	+0.4
1,446,801	+		GFF1415	0.89	-0.4
1,446,807	-		GFF1415	0.89	+0.4
1,446,807	-		GFF1415	0.89	-0.6
1,446,809	-		GFF1415	0.89	-0.9
1,446,818	+		GFF1415	0.90	-1.1
1,446,826	-				-0.4
1,446,843	-				-1.0
1,446,846	+				+0.6
1,446,872	-				-1.3
1,446,882	+				+0.3
1,446,889	+				-0.5
1,446,889	+				-0.7
1,446,889	+				+1.4
1,446,890	-				+0.0
1,446,892	-				-2.1
1,446,893	+				+1.5
1,446,897	-				+0.7
1,446,897	-				-0.0
1,446,900	-				-0.8
1,446,901	-				+0.2
1,446,909	-				+1.6
1,446,911	+				+0.0
1,446,935	+				-1.0
1,446,947	+				+0.0
1,446,953	+				+0.1
1,446,953	+				-0.7
1,446,953	+				-1.6
1,446,953	+				-0.2
1,446,953	+				+0.1
1,446,953	+				-0.3
1,446,953	+				+0.0
1,446,953	+				-2.0
1,446,953	+				-1.0
1,446,953	+				+0.3
1,446,953	+				+0.3
1,446,953	+				-0.6
1,446,953	+				+0.6
1,446,955	-				+0.3
1,446,961	-				-0.4
1,446,961	-				+1.6
1,446,961	-				-1.1
1,446,961	-				-0.6
1,446,961	-				-1.6
1,446,961	-				-1.9
1,446,961	-				-0.2
1,446,961	-				+1.1
1,446,961	-				-1.0
1,446,961	-				+0.4
1,446,961	-				-0.3
1,446,971	-				-1.3
1,446,983	+				+0.5
1,446,991	-				-0.5
1,446,991	-				-0.3
1,446,991	-				-0.6
1,446,992	+				-0.5
1,447,000	-				+0.7
1,447,055	+		GFF1416	0.11	-2.6
1,447,055	+		GFF1416	0.11	-2.6
1,447,055	+		GFF1416	0.11	-1.0
1,447,063	-		GFF1416	0.13	-0.6
1,447,063	-		GFF1416	0.13	-0.1
1,447,063	-		GFF1416	0.13	-1.2
1,447,063	-		GFF1416	0.13	-0.4
1,447,063	-		GFF1416	0.13	-1.3
1,447,063	-		GFF1416	0.13	-1.8
1,447,089	+		GFF1416	0.17	-0.8
1,447,089	+		GFF1416	0.17	-1.1
1,447,097	-		GFF1416	0.18	+0.6
1,447,097	-		GFF1416	0.18	-0.4
1,447,171	+		GFF1416	0.30	-1.1
1,447,171	+		GFF1416	0.30	-1.1
1,447,171	+		GFF1416	0.30	-2.6
1,447,171	+		GFF1416	0.30	-0.1
1,447,171	+		GFF1416	0.30	-0.3
1,447,179	-		GFF1416	0.31	-0.3
1,447,181	+		GFF1416	0.31	+0.3
1,447,181	+		GFF1416	0.31	+0.3
1,447,181	+		GFF1416	0.31	+0.3
1,447,181	+		GFF1416	0.31	-0.5
1,447,181	+		GFF1416	0.31	+0.5
1,447,181	+		GFF1416	0.31	-0.3
1,447,181	+		GFF1416	0.31	+0.2
1,447,181	+		GFF1416	0.31	+1.3
1,447,181	+		GFF1416	0.31	+0.5
1,447,181	+		GFF1416	0.31	-0.7
1,447,189	-		GFF1416	0.33	-0.4
1,447,189	-		GFF1416	0.33	-0.1
1,447,189	-		GFF1416	0.33	+0.5
1,447,189	-		GFF1416	0.33	+0.7
1,447,189	-		GFF1416	0.33	+0.4
1,447,191	+		GFF1416	0.33	+0.3
1,447,191	+		GFF1416	0.33	-0.3
1,447,199	-		GFF1416	0.34	-0.1
1,447,226	+		GFF1416	0.38	+0.5
1,447,226	+		GFF1416	0.38	-0.3
1,447,234	-		GFF1416	0.40	+0.3
1,447,234	-		GFF1416	0.40	-0.5
1,447,242	-		GFF1416	0.41	+1.8
1,447,283	+		GFF1416	0.47	+1.2
1,447,283	+		GFF1416	0.47	+0.7
1,447,283	+		GFF1416	0.47	+0.3
1,447,291	+		GFF1416	0.49	+1.0
1,447,291	-		GFF1416	0.49	-0.7
1,447,291	-		GFF1416	0.49	-0.9
1,447,291	-		GFF1416	0.49	-0.8
1,447,291	-		GFF1416	0.49	-0.6
1,447,291	-		GFF1416	0.49	-0.9
1,447,291	-		GFF1416	0.49	+0.3
1,447,291	-		GFF1416	0.49	-3.0
1,447,307	-		GFF1416	0.51	-2.1
1,447,326	+		GFF1416	0.54	-0.5
1,447,334	-		GFF1416	0.56	+0.3
1,447,357	-		GFF1416	0.59	+0.6
1,447,357	-		GFF1416	0.59	+0.2
1,447,362	+		GFF1416	0.60	-0.3
1,447,362	+		GFF1416	0.60	+0.0
1,447,367	+		GFF1416	0.61	-1.5
1,447,370	-		GFF1416	0.61	-0.2
1,447,372	+		GFF1416	0.62	-0.3
1,447,420	-		GFF1416	0.69	+1.0
1,447,431	+		GFF1416	0.71	+0.6
1,447,444	-		GFF1416	0.73	-0.3
1,447,473	-		GFF1416	0.78	+0.8
1,447,522	+		GFF1416	0.85	+0.9
1,447,523	+		GFF1416	0.86	-0.5
1,447,523	+		GFF1416	0.86	+0.9
1,447,523	+		GFF1416	0.86	-0.8
1,447,523	+		GFF1416	0.86	-0.2
1,447,523	+		GFF1416	0.86	-0.5
1,447,523	+		GFF1416	0.86	+0.6
1,447,528	+		GFF1416	0.86	-1.8
1,447,531	-		GFF1416	0.87	-2.3
1,447,602	+				+0.5
1,447,623	-				+0.4
1,447,627	+				+0.5
1,447,668	+				-1.8
1,447,680	+				+0.0
1,447,698	-				+0.1
1,447,699	+				+0.4
1,447,699	+				+1.3
1,447,700	-				+0.5
1,447,730	-				-2.9
1,447,733	+				-1.8
1,447,755	+				+0.3
1,447,755	+				-2.0
1,447,755	+				-1.6
1,447,755	+				-1.8
1,447,755	+				+0.2
1,447,755	+				+0.5
1,447,763	-				+0.1
1,447,763	-				+0.0
1,447,806	+		GFF1417	0.12	+0.4
1,447,806	+		GFF1417	0.12	-1.9
1,447,814	-		GFF1417	0.13	+1.8
1,447,814	-		GFF1417	0.13	-0.9
1,447,821	+		GFF1417	0.14	-0.3
1,447,821	+		GFF1417	0.14	+0.6
1,447,829	-		GFF1417	0.15	+0.4
1,447,829	-		GFF1417	0.15	-1.3
1,447,836	+		GFF1417	0.16	-2.2
1,447,869	+		GFF1417	0.20	-1.8
1,447,877	-		GFF1417	0.21	-0.4
1,447,877	-		GFF1417	0.21	-0.3
1,447,909	-		GFF1417	0.25	+0.0
1,447,928	-		GFF1417	0.28	-0.3
1,447,928	-		GFF1417	0.28	-0.1
1,447,950	+		GFF1417	0.30	-0.6
1,447,964	+		GFF1417	0.32	+0.9
1,447,975	+		GFF1417	0.34	-0.3
1,447,986	+		GFF1417	0.35	-0.6
1,448,000	-		GFF1417	0.37	-2.2
1,448,000	-		GFF1417	0.37	-2.5
1,448,002	+		GFF1417	0.37	+0.7
1,448,004	+		GFF1417	0.37	-1.3
1,448,008	-		GFF1417	0.38	-1.8
1,448,012	-		GFF1417	0.38	-1.3
1,448,022	-		GFF1417	0.40	-0.7
1,448,022	-		GFF1417	0.40	-1.2
1,448,033	+		GFF1417	0.41	-1.1
1,448,063	+		GFF1417	0.45	+0.1
1,448,063	+		GFF1417	0.45	-1.8
1,448,103	+		GFF1417	0.50	-0.7
1,448,103	+		GFF1417	0.50	-0.4
1,448,103	+		GFF1417	0.50	-0.3
1,448,103	+		GFF1417	0.50	+0.8
1,448,103	+		GFF1417	0.50	-1.2
1,448,103	+		GFF1417	0.50	-0.1
1,448,103	+		GFF1417	0.50	+1.2
1,448,103	+		GFF1417	0.50	+0.6
1,448,103	+		GFF1417	0.50	-2.5
1,448,103	+		GFF1417	0.50	-0.6
1,448,103	+		GFF1417	0.50	-2.0
1,448,103	+		GFF1417	0.50	-1.4
1,448,103	+		GFF1417	0.50	-0.8
1,448,103	+		GFF1417	0.50	-1.0
1,448,110	-		GFF1417	0.51	+0.5
1,448,111	-		GFF1417	0.51	+0.6
1,448,111	-		GFF1417	0.51	+1.5
1,448,111	-		GFF1417	0.51	-0.6
1,448,111	-		GFF1417	0.51	-0.3
1,448,111	-		GFF1417	0.51	+0.0
1,448,111	-		GFF1417	0.51	-1.0
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