Strain Fitness in Sphingobium sp. HT1-2 around GFF1415

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,444,357	+		GFF1414	0.48	-0.7
1,444,357	+		GFF1414	0.48	-1.0
1,444,360	-		GFF1414	0.48	+0.6
1,444,360	-		GFF1414	0.48	+1.1
1,444,377	+		GFF1414	0.49	-0.4
1,444,377	+		GFF1414	0.49	-0.5
1,444,377	+		GFF1414	0.49	-0.3
1,444,380	-		GFF1414	0.49	-0.7
1,444,385	-		GFF1414	0.49	-1.9
1,444,385	-		GFF1414	0.49	+0.6
1,444,390	-		GFF1414	0.50	-0.7
1,444,391	-		GFF1414	0.50	+0.2
1,444,395	-		GFF1414	0.50	+0.5
1,444,400	-		GFF1414	0.50	-1.4
1,444,403	+		GFF1414	0.50	-0.8
1,444,411	-		GFF1414	0.51	+0.0
1,444,412	-		GFF1414	0.51	+0.8
1,444,430	-		GFF1414	0.52	+2.0
1,444,547	+		GFF1414	0.59	-0.4
1,444,547	-		GFF1414	0.59	+0.8
1,444,547	-		GFF1414	0.59	+0.0
1,444,553	+		GFF1414	0.60	+0.2
1,444,553	+		GFF1414	0.60	-0.2
1,444,558	+		GFF1414	0.60	-1.2
1,444,561	-		GFF1414	0.60	-1.1
1,444,561	-		GFF1414	0.60	-0.1
1,444,561	-		GFF1414	0.60	+0.4
1,444,561	-		GFF1414	0.60	-1.1
1,444,561	-		GFF1414	0.60	+0.2
1,444,566	-		GFF1414	0.61	-2.8
1,444,591	-		GFF1414	0.62	-2.4
1,444,608	+		GFF1414	0.63	-1.3
1,444,616	-		GFF1414	0.64	-2.1
1,444,618	+		GFF1414	0.64	-0.3
1,444,633	+		GFF1414	0.65	+0.7
1,444,635	-		GFF1414	0.65	-2.3
1,444,639	+		GFF1414	0.65	+0.5
1,444,678	+		GFF1414	0.68	+0.2
1,444,726	+		GFF1414	0.71	-0.2
1,444,734	-		GFF1414	0.71	-0.2
1,444,742	-		GFF1414	0.72	-0.3
1,444,750	+		GFF1414	0.72	-0.3
1,444,796	-		GFF1414	0.75	-0.8
1,444,796	-		GFF1414	0.75	+1.2
1,444,796	-		GFF1414	0.75	-2.2
1,444,802	+		GFF1414	0.75	+1.0
1,444,816	-		GFF1414	0.76	-1.1
1,444,849	-		GFF1414	0.78	-0.5
1,444,852	+		GFF1414	0.79	+0.5
1,444,860	-		GFF1414	0.79	+0.2
1,444,883	+		GFF1414	0.80	-0.7
1,444,883	+		GFF1414	0.80	-0.5
1,444,888	+		GFF1414	0.81	-0.8
1,444,888	+		GFF1414	0.81	-1.3
1,444,888	+		GFF1414	0.81	-1.1
1,444,895	-		GFF1414	0.81	+0.9
1,444,896	-		GFF1414	0.81	-0.6
1,444,896	-		GFF1414	0.81	-0.6
1,444,896	-		GFF1414	0.81	+0.1
1,444,896	-		GFF1414	0.81	-0.8
1,444,919	+		GFF1414	0.83	-0.2
1,444,921	-		GFF1414	0.83	+1.3
1,444,924	+		GFF1414	0.83	-0.3
1,444,924	+		GFF1414	0.83	-0.4
1,444,924	+		GFF1414	0.83	-0.4
1,444,924	+		GFF1414	0.83	-1.8
1,444,924	+		GFF1414	0.83	-3.4
1,444,924	+		GFF1414	0.83	-2.8
1,444,932	-		GFF1414	0.84	-1.5
1,444,932	-		GFF1414	0.84	+0.1
1,444,932	-		GFF1414	0.84	-1.7
1,444,932	-		GFF1414	0.84	-0.3
1,444,946	+		GFF1414	0.84	-0.8
1,444,958	+		GFF1414	0.85	+0.7
1,444,966	-		GFF1414	0.86	+0.7
1,444,991	-		GFF1414	0.87	+0.7
1,445,002	+		GFF1414	0.88	+1.7
1,445,022	+		GFF1414	0.89	-1.5
1,445,022	+		GFF1414	0.89	-0.1
1,445,027	+		GFF1414	0.89	-2.3
1,445,030	-		GFF1414	0.90	-0.1
1,445,047	-				-0.9
1,445,064	+				-1.4
1,445,064	+				-0.4
1,445,064	+				+0.3
1,445,072	-				-0.5
1,445,074	+				-0.6
1,445,074	+				+0.3
1,445,083	+				-1.0
1,445,083	+				-0.3
1,445,083	+				+1.2
1,445,083	+				+0.2
1,445,083	+				+0.2
1,445,083	+				-0.5
1,445,083	+				+1.2
1,445,083	+				+0.4
1,445,083	+				+0.0
1,445,083	+				-0.8
1,445,083	+				-0.3
1,445,083	+				-1.0
1,445,083	+				-1.8
1,445,083	+				-0.2
1,445,083	+				-0.5
1,445,083	+				-0.5
1,445,083	+				+0.5
1,445,083	+				-0.6
1,445,083	+				-2.4
1,445,083	+				+0.8
1,445,091	-				-0.6
1,445,091	-				-2.0
1,445,091	-				+1.3
1,445,091	-				-2.2
1,445,091	-				-1.5
1,445,091	-				-1.1
1,445,091	-				+0.9
1,445,091	-				-0.2
1,445,091	-				-1.3
1,445,091	-				+0.4
1,445,091	-				-0.4
1,445,091	-				+0.7
1,445,091	-				+0.0
1,445,091	-				+0.4
1,445,091	-				-0.1
1,445,091	-				+0.5
1,445,091	-				-0.3
1,445,091	-				-0.2
1,445,091	-				+0.8
1,445,091	-				-0.2
1,445,091	-				-0.7
1,445,091	-				-0.7
1,445,091	-				-0.3
1,445,091	-				+0.4
1,445,091	-				+0.4
1,445,091	-				-1.7
1,445,091	-				-0.8
1,445,096	-				-0.0
1,445,100	+				-2.1
1,445,125	+				-0.9
1,445,131	+				-0.1
1,445,131	+				-0.5
1,445,131	+				+1.0
1,445,134	-				-0.7
1,445,136	+				-0.2
1,445,136	+				+1.2
1,445,136	+				+0.0
1,445,136	+				-1.2
1,445,136	+				+0.8
1,445,139	-				-0.5
1,445,139	-				+0.3
1,445,143	+				-0.5
1,445,144	-				-0.8
1,445,144	-				+0.4
1,445,144	-				-0.2
1,445,144	-				-1.3
1,445,144	-				+0.7
1,445,144	-				-0.5
1,445,150	-				-2.2
1,445,151	-				-0.3
1,445,160	-				-1.1
1,445,162	+				-0.2
1,445,170	-				-0.3
1,445,183	+				-1.5
1,445,227	+				-1.5
1,445,228	+				-0.9
1,445,229	+				+0.3
1,445,229	+				-1.3
1,445,240	+				-1.6
1,445,243	+				-1.4
1,445,263	+				-2.1
1,445,271	-				+1.2
1,445,306	-				-1.5
1,445,316	+				+1.7
1,445,324	-				-2.4
1,445,329	-				+1.2
1,445,329	-				-0.4
1,445,451	-				-1.2
1,445,453	+				+0.1
1,445,467	-				-0.1
1,445,485	+				-0.2
1,445,493	-				-1.0
1,445,495	+				-0.4
1,445,498	-				-0.3
1,445,539	+		GFF1415	0.11	+0.8
1,445,573	+		GFF1415	0.13	-0.1
1,445,581	-		GFF1415	0.14	+0.3
1,445,583	+		GFF1415	0.14	+0.5
1,445,583	+		GFF1415	0.14	-0.6
1,445,583	+		GFF1415	0.14	+0.4
1,445,583	+		GFF1415	0.14	-0.3
1,445,583	+		GFF1415	0.14	-0.7
1,445,583	+		GFF1415	0.14	+0.3
1,445,583	+		GFF1415	0.14	-1.8
1,445,583	+		GFF1415	0.14	-1.8
1,445,583	+		GFF1415	0.14	+1.0
1,445,583	+		GFF1415	0.14	-0.5
1,445,583	+		GFF1415	0.14	-1.1
1,445,591	-		GFF1415	0.15	+0.7
1,445,591	-		GFF1415	0.15	-0.6
1,445,591	-		GFF1415	0.15	+1.6
1,445,591	-		GFF1415	0.15	+1.3
1,445,591	-		GFF1415	0.15	+0.2
1,445,591	-		GFF1415	0.15	-0.9
1,445,591	-		GFF1415	0.15	-0.3
1,445,591	-		GFF1415	0.15	+0.9
1,445,591	-		GFF1415	0.15	-0.5
1,445,591	-		GFF1415	0.15	-0.9
1,445,591	-		GFF1415	0.15	-2.3
1,445,591	-		GFF1415	0.15	-0.4
1,445,600	-		GFF1415	0.15	-0.3
1,445,600	-		GFF1415	0.15	+0.3
1,445,602	-		GFF1415	0.15	-2.3
1,445,604	+		GFF1415	0.15	+0.9
1,445,621	+		GFF1415	0.16	+0.1
1,445,626	+		GFF1415	0.17	+0.1
1,445,626	+		GFF1415	0.17	+0.4
1,445,626	+		GFF1415	0.17	-1.1
1,445,626	+		GFF1415	0.17	+0.5
1,445,626	+		GFF1415	0.17	+0.3
1,445,626	+		GFF1415	0.17	+0.3
1,445,626	+		GFF1415	0.17	-1.7
1,445,626	+		GFF1415	0.17	+0.8
1,445,626	+		GFF1415	0.17	-1.8
1,445,629	-		GFF1415	0.17	-0.3
1,445,629	-		GFF1415	0.17	-1.0
1,445,634	-		GFF1415	0.17	-1.7
1,445,634	-		GFF1415	0.17	+0.6
1,445,634	-		GFF1415	0.17	+0.1
1,445,634	-		GFF1415	0.17	+0.8
1,445,645	+		GFF1415	0.18	-0.1
1,445,670	+		GFF1415	0.19	+0.4
1,445,696	+		GFF1415	0.21	-0.5
1,445,715	+		GFF1415	0.22	+1.3
1,445,740	+		GFF1415	0.24	-0.4
1,445,775	+		GFF1415	0.26	-1.1
1,445,775	-		GFF1415	0.26	+0.9
1,445,782	+		GFF1415	0.26	+0.0
1,445,790	-		GFF1415	0.27	+1.4
1,445,806	-		GFF1415	0.28	+0.7
1,445,816	-		GFF1415	0.28	-2.4
1,445,824	+		GFF1415	0.29	-2.9
1,445,824	+		GFF1415	0.29	-1.4
1,445,824	+		GFF1415	0.29	-0.1
1,445,827	-		GFF1415	0.29	-1.0
1,445,832	-		GFF1415	0.29	+0.5
1,445,832	-		GFF1415	0.29	+0.0
1,445,832	-		GFF1415	0.29	-0.4
1,445,832	-		GFF1415	0.29	-0.6
1,445,836	-		GFF1415	0.30	-0.4
1,445,857	+		GFF1415	0.31	+0.5
1,445,857	+		GFF1415	0.31	+0.6
1,445,893	-		GFF1415	0.33	-0.3
1,445,905	-		GFF1415	0.34	+0.6
1,445,939	+		GFF1415	0.36	-0.8
1,445,949	+		GFF1415	0.36	+0.4
1,445,957	-		GFF1415	0.37	-1.3
1,445,961	+		GFF1415	0.37	-0.5
1,445,967	+		GFF1415	0.38	+1.7
1,445,967	+		GFF1415	0.38	-0.3
1,445,967	+		GFF1415	0.38	+0.0
1,445,967	+		GFF1415	0.38	+0.7
1,445,967	+		GFF1415	0.38	+1.5
1,445,967	+		GFF1415	0.38	-0.7
1,445,967	+		GFF1415	0.38	-1.1
1,445,967	+		GFF1415	0.38	-0.1
1,445,967	+		GFF1415	0.38	-2.1
1,445,967	+		GFF1415	0.38	-1.0
1,445,967	+		GFF1415	0.38	-0.1
1,445,967	+		GFF1415	0.38	+0.8
1,445,975	-		GFF1415	0.38	-0.2
1,445,975	-		GFF1415	0.38	+2.0
1,445,975	-		GFF1415	0.38	+0.1
1,445,975	-		GFF1415	0.38	-1.0
1,445,975	-		GFF1415	0.38	+0.9
1,445,975	-		GFF1415	0.38	-0.6
1,445,975	-		GFF1415	0.38	+0.2
1,445,975	-		GFF1415	0.38	-2.3
1,445,975	-		GFF1415	0.38	+1.2
1,445,982	+		GFF1415	0.38	-0.9
1,445,982	+		GFF1415	0.38	-0.6
1,445,982	+		GFF1415	0.38	-0.3
1,445,982	+		GFF1415	0.38	-1.4
1,445,982	+		GFF1415	0.38	-1.5
1,445,990	-		GFF1415	0.39	-0.1
1,445,990	-		GFF1415	0.39	+1.0
1,445,990	-		GFF1415	0.39	-0.1
1,445,990	-		GFF1415	0.39	-0.3
1,445,990	-		GFF1415	0.39	+0.8
1,445,990	-		GFF1415	0.39	+0.3
1,445,990	-		GFF1415	0.39	-0.2
1,445,990	-		GFF1415	0.39	-1.1
1,446,010	+		GFF1415	0.40	+1.0
1,446,014	+		GFF1415	0.40	-0.6
1,446,024	+		GFF1415	0.41	-1.0
1,446,032	-		GFF1415	0.42	-1.4
1,446,033	-		GFF1415	0.42	-0.8
1,446,041	+		GFF1415	0.42	-0.5
1,446,041	+		GFF1415	0.42	+1.0
1,446,041	+		GFF1415	0.42	-0.4
1,446,041	+		GFF1415	0.42	+1.2
1,446,041	+		GFF1415	0.42	-0.4
1,446,041	+		GFF1415	0.42	+0.6
1,446,041	+		GFF1415	0.42	-0.2
1,446,041	+		GFF1415	0.42	+0.2
1,446,041	+		GFF1415	0.42	-0.0
1,446,041	-		GFF1415	0.42	-0.4
1,446,049	-		GFF1415	0.43	+0.6
1,446,049	-		GFF1415	0.43	-1.8
1,446,049	-		GFF1415	0.43	+0.2
1,446,049	-		GFF1415	0.43	-2.5
1,446,049	-		GFF1415	0.43	-2.5
1,446,049	-		GFF1415	0.43	+0.2
1,446,049	-		GFF1415	0.43	-0.8
1,446,049	-		GFF1415	0.43	-0.9
1,446,049	-		GFF1415	0.43	+1.3
1,446,061	+		GFF1415	0.43	-1.0
1,446,061	+		GFF1415	0.43	+0.8
1,446,069	-		GFF1415	0.44	+0.0
1,446,069	-		GFF1415	0.44	-1.6
1,446,069	-		GFF1415	0.44	-0.8
1,446,103	+		GFF1415	0.46	-0.4
1,446,103	+		GFF1415	0.46	+0.0
1,446,103	+		GFF1415	0.46	-0.2
1,446,103	+		GFF1415	0.46	+0.6
1,446,103	+		GFF1415	0.46	-0.1
1,446,103	+		GFF1415	0.46	-1.8
1,446,103	+		GFF1415	0.46	-1.4
1,446,103	+		GFF1415	0.46	-1.7
1,446,103	+		GFF1415	0.46	+0.5
1,446,103	+		GFF1415	0.46	-0.1
1,446,103	+		GFF1415	0.46	+0.3
1,446,103	+		GFF1415	0.46	-1.4
1,446,104	+		GFF1415	0.46	+0.6
1,446,105	-		GFF1415	0.46	-0.3
1,446,105	-		GFF1415	0.46	-0.7
1,446,105	-		GFF1415	0.46	-0.8
1,446,111	-		GFF1415	0.46	+0.6
1,446,111	-		GFF1415	0.46	-0.3
1,446,111	-		GFF1415	0.46	-1.2
1,446,111	-		GFF1415	0.46	-1.1
1,446,111	-		GFF1415	0.46	-1.1
1,446,111	-		GFF1415	0.46	-1.3
1,446,111	-		GFF1415	0.46	-1.8
1,446,111	-		GFF1415	0.46	-0.9
1,446,133	+		GFF1415	0.48	+0.7
1,446,147	-		GFF1415	0.49	-0.2
1,446,178	+		GFF1415	0.50	-2.4
1,446,178	+		GFF1415	0.50	+0.2
1,446,182	+		GFF1415	0.51	+0.2
1,446,187	+		GFF1415	0.51	-0.6
1,446,190	-		GFF1415	0.51	+0.7
1,446,211	-		GFF1415	0.52	+0.9
1,446,211	-		GFF1415	0.52	-1.1
1,446,211	-		GFF1415	0.52	+0.7
1,446,244	-		GFF1415	0.54	+0.8
1,446,252	+		GFF1415	0.55	-0.5
1,446,257	+		GFF1415	0.55	+0.1
1,446,257	+		GFF1415	0.55	+0.6
1,446,260	-		GFF1415	0.55	-0.1
1,446,260	-		GFF1415	0.55	+0.3
1,446,290	+		GFF1415	0.57	-0.9
1,446,298	-		GFF1415	0.58	-0.2
1,446,298	-		GFF1415	0.58	-0.8
1,446,300	+		GFF1415	0.58	+0.1
1,446,300	+		GFF1415	0.58	+0.2
1,446,306	-		GFF1415	0.58	-0.1
1,446,306	-		GFF1415	0.58	+0.5
1,446,313	-		GFF1415	0.59	+0.7
1,446,331	+		GFF1415	0.60	-0.9
1,446,331	+		GFF1415	0.60	-0.1
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