Strain Fitness in Sphingobium sp. HT1-2 around GFF1402

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,427,150	-				+0.5
1,427,157	+				+0.1
1,427,157	+				-0.1
1,427,157	+				+1.1
1,427,157	+				+1.1
1,427,157	+				+1.2
1,427,157	+				-2.1
1,427,157	+				+0.4
1,427,157	+				-1.4
1,427,165	-				-0.2
1,427,170	+				-1.2
1,427,176	-				+0.2
1,427,180	+				-0.9
1,427,186	-				-0.3
1,427,188	-				-0.4
1,427,194	+		GFF1401	0.10	-0.6
1,427,194	+		GFF1401	0.10	-0.6
1,427,202	-		GFF1401	0.11	-0.9
1,427,202	-		GFF1401	0.11	-0.4
1,427,212	+		GFF1401	0.12	-0.5
1,427,212	+		GFF1401	0.12	+0.5
1,427,212	+		GFF1401	0.12	+0.8
1,427,219	+		GFF1401	0.13	+0.0
1,427,225	-		GFF1401	0.13	+1.2
1,427,225	-		GFF1401	0.13	+0.7
1,427,225	-		GFF1401	0.13	+0.5
1,427,227	-		GFF1401	0.14	-0.0
1,427,227	-		GFF1401	0.14	-1.4
1,427,230	+		GFF1401	0.14	-0.3
1,427,230	+		GFF1401	0.14	-0.3
1,427,230	+		GFF1401	0.14	-0.1
1,427,230	+		GFF1401	0.14	-1.6
1,427,230	+		GFF1401	0.14	-0.8
1,427,233	-		GFF1401	0.14	-0.5
1,427,238	-		GFF1401	0.15	+0.2
1,427,238	-		GFF1401	0.15	-3.3
1,427,238	-		GFF1401	0.15	+0.0
1,427,238	-		GFF1401	0.15	+0.2
1,427,238	-		GFF1401	0.15	-0.4
1,427,273	+		GFF1401	0.18	+0.5
1,427,274	+		GFF1401	0.18	+0.1
1,427,281	-		GFF1401	0.19	+0.3
1,427,289	-		GFF1401	0.20	-0.4
1,427,291	+		GFF1401	0.20	-0.1
1,427,299	-		GFF1401	0.21	+0.1
1,427,318	+		GFF1401	0.23	+0.2
1,427,326	-		GFF1401	0.24	-1.2
1,427,328	-		GFF1401	0.24	+1.2
1,427,341	+		GFF1401	0.25	-1.4
1,427,347	-		GFF1401	0.26	-0.4
1,427,347	-		GFF1401	0.26	-0.3
1,427,347	-		GFF1401	0.26	+1.2
1,427,349	+		GFF1401	0.26	-1.6
1,427,349	+		GFF1401	0.26	-1.4
1,427,349	+		GFF1401	0.26	+0.3
1,427,349	+		GFF1401	0.26	+1.1
1,427,349	+		GFF1401	0.26	-1.0
1,427,349	+		GFF1401	0.26	-0.7
1,427,355	-		GFF1401	0.26	+0.4
1,427,357	-		GFF1401	0.27	+1.2
1,427,357	-		GFF1401	0.27	+0.6
1,427,357	-		GFF1401	0.27	-0.3
1,427,357	-		GFF1401	0.27	+0.0
1,427,357	-		GFF1401	0.27	-0.6
1,427,357	-		GFF1401	0.27	-0.3
1,427,357	-		GFF1401	0.27	+0.9
1,427,357	-		GFF1401	0.27	-0.3
1,427,363	+		GFF1401	0.27	-1.8
1,427,376	-		GFF1401	0.28	-0.8
1,427,418	-		GFF1401	0.33	+0.9
1,427,432	+		GFF1401	0.34	-2.1
1,427,441	-		GFF1401	0.35	-0.5
1,427,453	+		GFF1401	0.36	+0.1
1,427,501	+		GFF1401	0.41	-1.0
1,427,501	+		GFF1401	0.41	+1.2
1,427,501	+		GFF1401	0.41	-0.5
1,427,501	+		GFF1401	0.41	+0.7
1,427,501	+		GFF1401	0.41	+0.8
1,427,501	+		GFF1401	0.41	-0.2
1,427,501	+		GFF1401	0.41	+0.0
1,427,501	+		GFF1401	0.41	-0.5
1,427,501	+		GFF1401	0.41	+0.3
1,427,501	+		GFF1401	0.41	-0.6
1,427,501	+		GFF1401	0.41	-0.4
1,427,501	+		GFF1401	0.41	-0.8
1,427,507	-		GFF1401	0.41	-0.8
1,427,509	-		GFF1401	0.42	-1.0
1,427,509	-		GFF1401	0.42	-1.8
1,427,509	-		GFF1401	0.42	-0.6
1,427,509	-		GFF1401	0.42	-0.3
1,427,509	-		GFF1401	0.42	-0.8
1,427,509	-		GFF1401	0.42	-1.4
1,427,509	-		GFF1401	0.42	-1.8
1,427,509	-		GFF1401	0.42	-0.9
1,427,509	-		GFF1401	0.42	-1.6
1,427,511	+		GFF1401	0.42	-0.5
1,427,511	+		GFF1401	0.42	+1.2
1,427,512	+		GFF1401	0.42	-0.5
1,427,520	+		GFF1401	0.43	-0.9
1,427,528	-		GFF1401	0.44	-0.8
1,427,528	-		GFF1401	0.44	-0.1
1,427,549	-		GFF1401	0.46	-0.4
1,427,554	-		GFF1401	0.46	-1.5
1,427,557	-		GFF1401	0.46	+0.5
1,427,559	-		GFF1401	0.47	-0.3
1,427,621	+		GFF1401	0.53	-0.3
1,427,643	+		GFF1401	0.55	-1.2
1,427,674	+		GFF1401	0.58	+1.0
1,427,675	+		GFF1401	0.58	+0.4
1,427,675	+		GFF1401	0.58	+0.9
1,427,675	+		GFF1401	0.58	-1.4
1,427,675	+		GFF1401	0.58	+0.4
1,427,675	+		GFF1401	0.58	-0.1
1,427,675	+		GFF1401	0.58	-1.3
1,427,675	+		GFF1401	0.58	-0.3
1,427,675	+		GFF1401	0.58	-0.7
1,427,675	+		GFF1401	0.58	-1.4
1,427,678	-		GFF1401	0.58	+0.7
1,427,683	-		GFF1401	0.59	-0.2
1,427,683	-		GFF1401	0.59	+0.6
1,427,683	-		GFF1401	0.59	-0.2
1,427,683	-		GFF1401	0.59	-0.8
1,427,683	-		GFF1401	0.59	-1.3
1,427,683	-		GFF1401	0.59	+0.7
1,427,683	-		GFF1401	0.59	+0.4
1,427,683	-		GFF1401	0.59	-1.8
1,427,685	+		GFF1401	0.59	-0.6
1,427,693	-		GFF1401	0.60	-1.4
1,427,693	-		GFF1401	0.60	-0.1
1,427,695	+		GFF1401	0.60	-1.3
1,427,729	+		GFF1401	0.63	+1.2
1,427,746	-		GFF1401	0.65	+0.5
1,427,763	+		GFF1401	0.67	+0.0
1,427,773	-		GFF1401	0.68	-1.4
1,427,773	-		GFF1401	0.68	-1.4
1,427,787	+		GFF1401	0.69	-0.8
1,427,793	-		GFF1401	0.70	-0.9
1,427,812	+		GFF1401	0.72	+0.1
1,427,812	+		GFF1401	0.72	-0.2
1,427,820	-		GFF1401	0.73	+0.8
1,427,858	+		GFF1401	0.76	-0.1
1,427,858	+		GFF1401	0.76	-1.9
1,427,866	-		GFF1401	0.77	-1.7
1,427,866	-		GFF1401	0.77	+0.3
1,427,866	-		GFF1401	0.77	-0.4
1,427,885	-		GFF1401	0.79	+0.0
1,427,925	+		GFF1401	0.83	-0.9
1,427,925	+		GFF1401	0.83	-1.0
1,427,925	+		GFF1401	0.83	+0.1
1,427,927	+		GFF1401	0.83	+0.7
1,427,945	-		GFF1401	0.85	-2.3
1,427,965	-		GFF1401	0.87	+1.1
1,427,972	+		GFF1401	0.88	-0.7
1,427,979	+		GFF1401	0.88	-0.6
1,427,987	-		GFF1401	0.89	-0.2
1,428,005	+				-1.8
1,428,005	-				+0.2
1,428,026	+				+0.8
1,428,029	+				-0.4
1,428,036	+				-0.5
1,428,039	-				-1.1
1,428,098	-				-1.0
1,428,148	-				-1.8
1,428,166	+				-0.9
1,428,189	+				-1.3
1,428,197	+				+0.3
1,428,205	-				-0.3
1,428,230	+				-0.9
1,428,233	-				-1.4
1,428,250	-				-1.5
1,428,250	-				-0.4
1,428,289	-				+0.2
1,428,291	-				+0.2
1,428,294	+				+0.7
1,428,295	+				-0.1
1,428,315	-				-2.3
1,428,387	+		GFF1402	0.11	-0.2
1,428,387	+		GFF1402	0.11	+0.2
1,428,389	+		GFF1402	0.11	+1.0
1,428,389	+		GFF1402	0.11	-0.4
1,428,389	+		GFF1402	0.11	+1.7
1,428,394	+		GFF1402	0.11	+0.3
1,428,395	-		GFF1402	0.11	+0.4
1,428,397	-		GFF1402	0.11	+0.2
1,428,398	+		GFF1402	0.11	-1.5
1,428,424	-		GFF1402	0.12	-1.4
1,428,429	-		GFF1402	0.12	+2.3
1,428,458	+		GFF1402	0.14	+0.2
1,428,463	+		GFF1402	0.14	+0.9
1,428,468	+		GFF1402	0.14	+0.6
1,428,468	+		GFF1402	0.14	-0.5
1,428,470	+		GFF1402	0.14	+0.3
1,428,487	+		GFF1402	0.15	-0.9
1,428,500	+		GFF1402	0.15	+0.8
1,428,514	-		GFF1402	0.16	+0.1
1,428,520	+		GFF1402	0.16	+0.4
1,428,530	+		GFF1402	0.17	+0.7
1,428,557	-		GFF1402	0.18	+0.0
1,428,572	+		GFF1402	0.18	-0.7
1,428,572	+		GFF1402	0.18	-0.9
1,428,580	-		GFF1402	0.19	-0.4
1,428,581	+		GFF1402	0.19	+0.2
1,428,581	+		GFF1402	0.19	-0.8
1,428,581	+		GFF1402	0.19	-1.6
1,428,599	+		GFF1402	0.19	-1.7
1,428,599	-		GFF1402	0.19	+0.1
1,428,619	+		GFF1402	0.20	-1.2
1,428,641	+		GFF1402	0.21	-1.8
1,428,644	-		GFF1402	0.21	+0.6
1,428,662	+		GFF1402	0.22	+0.3
1,428,665	+		GFF1402	0.22	+1.3
1,428,670	-		GFF1402	0.22	-0.6
1,428,692	-		GFF1402	0.23	-0.4
1,428,694	+		GFF1402	0.23	-1.6
1,428,702	-		GFF1402	0.24	-1.7
1,428,703	-		GFF1402	0.24	+0.2
1,428,736	-		GFF1402	0.25	-1.7
1,428,758	+		GFF1402	0.26	-1.3
1,428,761	-		GFF1402	0.26	-0.4
1,428,766	-		GFF1402	0.26	+0.8
1,428,772	-		GFF1402	0.27	-0.9
1,428,779	-		GFF1402	0.27	+0.5
1,428,779	-		GFF1402	0.27	+1.8
1,428,786	+		GFF1402	0.27	-2.8
1,428,789	-		GFF1402	0.27	-1.2
1,428,789	-		GFF1402	0.27	-1.5
1,428,803	-		GFF1402	0.28	-1.8
1,428,828	+		GFF1402	0.29	+1.9
1,428,828	+		GFF1402	0.29	-1.6
1,428,828	+		GFF1402	0.29	+0.6
1,428,836	-		GFF1402	0.29	+1.5
1,428,836	-		GFF1402	0.29	-0.5
1,428,836	-		GFF1402	0.29	-0.3
1,428,836	-		GFF1402	0.29	-1.2
1,428,836	-		GFF1402	0.29	+1.0
1,428,886	+		GFF1402	0.31	-1.5
1,428,886	+		GFF1402	0.31	-0.6
1,428,886	+		GFF1402	0.31	+0.4
1,428,894	-		GFF1402	0.32	-1.1
1,428,894	-		GFF1402	0.32	-0.5
1,428,900	-		GFF1402	0.32	-0.3
1,428,901	+		GFF1402	0.32	+0.1
1,428,906	+		GFF1402	0.32	-0.2
1,428,929	+		GFF1402	0.33	-0.8
1,428,929	+		GFF1402	0.33	-2.2
1,428,937	-		GFF1402	0.34	-0.1
1,428,947	-		GFF1402	0.34	-3.1
1,428,947	-		GFF1402	0.34	+0.2
1,428,957	-		GFF1402	0.34	+0.7
1,428,957	-		GFF1402	0.34	+0.0
1,428,971	+		GFF1402	0.35	+1.4
1,428,978	-		GFF1402	0.35	+0.3
1,428,979	-		GFF1402	0.35	+0.5
1,428,983	+		GFF1402	0.35	-1.5
1,428,993	-		GFF1402	0.36	-0.8
1,428,993	-		GFF1402	0.36	-1.1
1,429,000	+		GFF1402	0.36	-0.2
1,429,000	+		GFF1402	0.36	+0.6
1,429,014	+		GFF1402	0.37	+0.0
1,429,019	+		GFF1402	0.37	-0.4
1,429,019	+		GFF1402	0.37	-0.4
1,429,022	-		GFF1402	0.37	+0.0
1,429,022	-		GFF1402	0.37	-0.5
1,429,027	-		GFF1402	0.37	-0.9
1,429,027	-		GFF1402	0.37	+0.0
1,429,027	-		GFF1402	0.37	-0.4
1,429,027	-		GFF1402	0.37	-1.4
1,429,034	+		GFF1402	0.38	-0.6
1,429,040	+		GFF1402	0.38	-0.8
1,429,042	-		GFF1402	0.38	+0.3
1,429,060	+		GFF1402	0.39	+0.1
1,429,061	-		GFF1402	0.39	+0.7
1,429,095	+		GFF1402	0.40	-0.4
1,429,095	+		GFF1402	0.40	+1.5
1,429,103	-		GFF1402	0.40	-1.1
1,429,103	-		GFF1402	0.40	+1.1
1,429,103	-		GFF1402	0.40	+0.0
1,429,103	-		GFF1402	0.40	-1.0
1,429,103	-		GFF1402	0.40	-0.6
1,429,117	-		GFF1402	0.41	-0.7
1,429,117	-		GFF1402	0.41	+0.4
1,429,117	-		GFF1402	0.41	+0.2
1,429,129	+		GFF1402	0.41	-0.4
1,429,137	-		GFF1402	0.42	+0.5
1,429,137	-		GFF1402	0.42	-1.5
1,429,158	+		GFF1402	0.43	-0.6
1,429,158	+		GFF1402	0.43	+1.1
1,429,165	+		GFF1402	0.43	-0.9
1,429,165	+		GFF1402	0.43	-0.8
1,429,166	-		GFF1402	0.43	+0.3
1,429,166	-		GFF1402	0.43	+0.1
1,429,170	+		GFF1402	0.43	+0.0
1,429,173	-		GFF1402	0.43	-1.0
1,429,175	+		GFF1402	0.43	-1.0
1,429,178	-		GFF1402	0.44	+0.2
1,429,183	-		GFF1402	0.44	+0.6
1,429,189	+		GFF1402	0.44	-1.3
1,429,189	+		GFF1402	0.44	-0.5
1,429,189	+		GFF1402	0.44	-0.7
1,429,189	+		GFF1402	0.44	-1.6
1,429,197	-		GFF1402	0.44	+1.9
1,429,199	+		GFF1402	0.44	-1.0
1,429,199	+		GFF1402	0.44	-2.8
1,429,202	-		GFF1402	0.45	-0.6
1,429,233	-		GFF1402	0.46	-0.6
1,429,245	+		GFF1402	0.46	+0.6
1,429,245	+		GFF1402	0.46	+0.1
1,429,250	+		GFF1402	0.47	-1.6
1,429,253	-		GFF1402	0.47	+0.2
1,429,253	-		GFF1402	0.47	+0.9
1,429,253	-		GFF1402	0.47	-0.9
1,429,258	-		GFF1402	0.47	-0.8
1,429,272	+		GFF1402	0.47	+0.8
1,429,272	+		GFF1402	0.47	-1.5
1,429,275	-		GFF1402	0.48	-0.7
1,429,296	+		GFF1402	0.48	-0.5
1,429,298	-		GFF1402	0.49	-1.3
1,429,304	-		GFF1402	0.49	+0.3
1,429,313	+		GFF1402	0.49	-0.3
1,429,328	+		GFF1402	0.50	-2.7
1,429,336	-		GFF1402	0.50	+0.1
1,429,337	-		GFF1402	0.50	-0.5
1,429,400	+		GFF1402	0.53	+0.4
1,429,413	-		GFF1402	0.53	+0.4
1,429,413	-		GFF1402	0.53	-1.1
1,429,415	+		GFF1402	0.53	-0.4
1,429,449	+		GFF1402	0.55	-0.1
1,429,454	+		GFF1402	0.55	-0.1
1,429,457	-		GFF1402	0.55	-0.6
1,429,457	-		GFF1402	0.55	-2.1
1,429,457	-		GFF1402	0.55	-0.1
1,429,462	-		GFF1402	0.55	-1.7
1,429,504	+		GFF1402	0.57	+0.9
1,429,574	-		GFF1402	0.60	+1.1
1,429,610	+		GFF1402	0.62	-0.3
1,429,610	+		GFF1402	0.62	-0.8
1,429,610	+		GFF1402	0.62	-1.8
1,429,610	+		GFF1402	0.62	-1.4
1,429,610	+		GFF1402	0.62	-0.3
1,429,610	+		GFF1402	0.62	-1.8
1,429,610	+		GFF1402	0.62	-0.2
1,429,610	+		GFF1402	0.62	-0.6
1,429,610	+		GFF1402	0.62	+0.7
1,429,610	+		GFF1402	0.62	-1.7
1,429,610	+		GFF1402	0.62	-0.7
1,429,610	+		GFF1402	0.62	+0.5
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1,430,297	+				+0.5
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1,430,297	+				+0.6
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1,430,311	+				+0.5
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1,430,399	-				+0.2
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