Strain Fitness in Sphingobium sp. HT1-2 around GFF1385

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,407,516	-		GFF1383	0.77	+0.9
1,407,522	-		GFF1383	0.77	-0.9
1,407,534	+		GFF1383	0.79	+0.3
1,407,536	+		GFF1383	0.79	+0.3
1,407,536	+		GFF1383	0.79	-0.8
1,407,541	+		GFF1383	0.79	+0.2
1,407,544	-		GFF1383	0.80	-0.4
1,407,544	-		GFF1383	0.80	-0.4
1,407,553	+		GFF1383	0.81	-0.4
1,407,559	-		GFF1383	0.81	-1.5
1,407,586	+		GFF1383	0.84	-1.0
1,407,609	+		GFF1383	0.87	+0.6
1,407,609	+		GFF1383	0.87	-0.6
1,407,610	+		GFF1383	0.87	+0.6
1,407,627	-		GFF1383	0.88	+1.1
1,407,637	-		GFF1383	0.89	-0.5
1,407,642	+				-0.4
1,407,644	+				-1.8
1,407,644	+				-1.6
1,407,650	-				-1.4
1,407,652	-				-1.8
1,407,652	-				+0.6
1,407,657	-				+0.2
1,407,671	+				+0.3
1,407,676	+				-0.3
1,407,679	-				+0.4
1,407,679	-				+0.2
1,407,689	-				-0.1
1,407,693	+				+0.7
1,407,701	-				+0.6
1,407,710	+				-1.2
1,407,710	+				-1.4
1,407,710	+				-0.4
1,407,718	-				-1.1
1,407,718	-				-0.1
1,407,723	-				-0.3
1,407,724	-				-0.8
1,407,728	-				+0.1
1,407,733	+				-1.5
1,407,733	+				-1.0
1,407,741	-				-0.4
1,407,741	-				+1.0
1,407,741	-				+0.2
1,407,741	-				-1.7
1,407,741	-				+0.4
1,407,741	-				-0.1
1,407,741	-				+0.0
1,407,741	-				+0.1
1,407,757	+				+1.1
1,407,783	-				-1.6
1,407,785	+				+0.3
1,407,788	-				-0.6
1,407,789	-				+1.0
1,407,795	-				-0.3
1,407,797	+				+0.1
1,407,804	+				-2.3
1,407,806	-				-0.3
1,407,812	-		GFF1384	0.10	+0.2
1,407,828	+		GFF1384	0.12	+0.3
1,407,830	-		GFF1384	0.13	-1.8
1,407,836	-		GFF1384	0.13	+0.1
1,407,837	+		GFF1384	0.14	+0.8
1,407,844	+		GFF1384	0.14	+0.5
1,407,844	+		GFF1384	0.14	+1.1
1,407,845	-		GFF1384	0.15	-0.6
1,407,850	-		GFF1384	0.15	+0.1
1,407,873	+		GFF1384	0.18	+0.2
1,407,880	+		GFF1384	0.19	+1.3
1,407,884	+		GFF1384	0.20	+0.8
1,407,890	+		GFF1384	0.20	-0.5
1,407,905	-		GFF1384	0.22	-0.8
1,407,905	-		GFF1384	0.22	-1.0
1,407,912	+		GFF1384	0.23	-2.3
1,407,915	+		GFF1384	0.24	-1.6
1,407,920	+		GFF1384	0.24	+0.3
1,407,928	-		GFF1384	0.25	-0.8
1,407,945	-		GFF1384	0.28	+0.1
1,407,947	-		GFF1384	0.28	-0.6
1,407,959	-		GFF1384	0.29	+0.3
1,407,994	+		GFF1384	0.34	-0.4
1,407,995	+		GFF1384	0.34	+0.5
1,408,000	+		GFF1384	0.35	+0.7
1,408,002	-		GFF1384	0.35	+0.3
1,408,008	-		GFF1384	0.36	+0.4
1,408,012	-		GFF1384	0.36	-0.9
1,408,012	-		GFF1384	0.36	-0.8
1,408,028	-		GFF1384	0.38	-1.6
1,408,048	+		GFF1384	0.41	-0.1
1,408,049	+		GFF1384	0.41	-1.0
1,408,050	+		GFF1384	0.41	-0.2
1,408,073	+		GFF1384	0.44	+0.4
1,408,104	-		GFF1384	0.48	-1.6
1,408,116	+		GFF1384	0.50	-3.1
1,408,120	+		GFF1384	0.50	-0.1
1,408,120	+		GFF1384	0.50	+0.2
1,408,120	+		GFF1384	0.50	+0.6
1,408,120	+		GFF1384	0.50	-0.9
1,408,120	+		GFF1384	0.50	-0.5
1,408,128	-		GFF1384	0.51	+0.4
1,408,128	-		GFF1384	0.51	-0.9
1,408,128	-		GFF1384	0.51	-0.7
1,408,128	-		GFF1384	0.51	-0.1
1,408,135	+		GFF1384	0.52	-0.5
1,408,135	+		GFF1384	0.52	+0.5
1,408,135	+		GFF1384	0.52	-0.4
1,408,135	+		GFF1384	0.52	-1.7
1,408,135	+		GFF1384	0.52	+1.1
1,408,135	+		GFF1384	0.52	-0.6
1,408,135	+		GFF1384	0.52	+0.4
1,408,135	+		GFF1384	0.52	+0.6
1,408,135	+		GFF1384	0.52	+0.5
1,408,135	+		GFF1384	0.52	+0.6
1,408,135	+		GFF1384	0.52	+0.6
1,408,135	+		GFF1384	0.52	-0.6
1,408,135	+		GFF1384	0.52	+0.3
1,408,135	+		GFF1384	0.52	+0.3
1,408,135	+		GFF1384	0.52	+0.2
1,408,135	+		GFF1384	0.52	+0.3
1,408,140	+		GFF1384	0.53	-0.9
1,408,143	-		GFF1384	0.53	-1.7
1,408,143	-		GFF1384	0.53	-1.6
1,408,143	-		GFF1384	0.53	+0.3
1,408,143	-		GFF1384	0.53	-1.1
1,408,143	-		GFF1384	0.53	-0.1
1,408,143	-		GFF1384	0.53	-0.2
1,408,143	-		GFF1384	0.53	-0.8
1,408,143	-		GFF1384	0.53	+0.5
1,408,143	-		GFF1384	0.53	+0.6
1,408,143	-		GFF1384	0.53	+0.0
1,408,143	-		GFF1384	0.53	-0.4
1,408,143	-		GFF1384	0.53	+0.8
1,408,143	-		GFF1384	0.53	+1.2
1,408,145	+		GFF1384	0.53	-0.5
1,408,148	-		GFF1384	0.54	+0.3
1,408,153	-		GFF1384	0.54	-0.8
1,408,153	-		GFF1384	0.54	-1.4
1,408,153	-		GFF1384	0.54	+0.1
1,408,153	-		GFF1384	0.54	-1.5
1,408,156	+		GFF1384	0.55	+0.7
1,408,156	+		GFF1384	0.55	+0.5
1,408,164	-		GFF1384	0.56	-0.7
1,408,164	-		GFF1384	0.56	-0.6
1,408,164	-		GFF1384	0.56	+0.2
1,408,166	+		GFF1384	0.56	-0.3
1,408,167	+		GFF1384	0.56	+0.3
1,408,169	-		GFF1384	0.56	-1.5
1,408,171	+		GFF1384	0.57	+0.9
1,408,174	-		GFF1384	0.57	+0.8
1,408,174	-		GFF1384	0.57	+0.7
1,408,174	-		GFF1384	0.57	+0.7
1,408,174	-		GFF1384	0.57	+0.4
1,408,174	-		GFF1384	0.57	+0.8
1,408,175	-		GFF1384	0.57	+0.1
1,408,176	-		GFF1384	0.57	-0.3
1,408,185	-		GFF1384	0.59	-1.6
1,408,215	+		GFF1384	0.62	+0.9
1,408,238	-		GFF1384	0.65	-1.1
1,408,251	-		GFF1384	0.67	+0.0
1,408,251	-		GFF1384	0.67	-1.4
1,408,261	-		GFF1384	0.68	+0.5
1,408,277	-		GFF1384	0.70	-1.1
1,408,277	-		GFF1384	0.70	+0.2
1,408,298	-		GFF1384	0.73	-1.1
1,408,300	-		GFF1384	0.73	-0.5
1,408,302	+		GFF1384	0.74	-0.4
1,408,322	-		GFF1384	0.76	-0.7
1,408,322	-		GFF1384	0.76	-1.0
1,408,332	+		GFF1384	0.78	+1.1
1,408,344	+		GFF1384	0.79	-0.9
1,408,345	+		GFF1384	0.79	-2.0
1,408,389	+		GFF1384	0.85	-1.4
1,408,419	-		GFF1384	0.89	+0.5
1,408,445	+				+0.1
1,408,452	+				-0.2
1,408,462	-				-0.1
1,408,464	+				+0.6
1,408,486	-				-0.5
1,408,493	+				-0.7
1,408,501	+				-0.7
1,408,503	+				-0.3
1,408,503	+				+0.6
1,408,503	+				+0.1
1,408,513	+				+0.1
1,408,514	-				-1.1
1,408,520	-				-0.3
1,408,557	-				-0.6
1,408,557	-				+0.6
1,408,580	-				+1.9
1,408,581	-				-0.7
1,408,583	+		GFF1385	0.10	+0.5
1,408,592	+		GFF1385	0.12	+0.3
1,408,606	+		GFF1385	0.14	+0.4
1,408,640	+		GFF1385	0.19	-0.6
1,408,673	-		GFF1385	0.24	+0.4
1,408,681	+		GFF1385	0.25	+0.7
1,408,688	+		GFF1385	0.26	-0.8
1,408,688	+		GFF1385	0.26	-0.4
1,408,688	+		GFF1385	0.26	+0.0
1,408,693	+		GFF1385	0.27	-1.5
1,408,696	-		GFF1385	0.27	+0.6
1,408,696	-		GFF1385	0.27	+1.1
1,408,696	-		GFF1385	0.27	-0.4
1,408,696	-		GFF1385	0.27	-0.6
1,408,696	-		GFF1385	0.27	-0.6
1,408,696	-		GFF1385	0.27	-2.4
1,408,698	+		GFF1385	0.27	-1.5
1,408,698	+		GFF1385	0.27	-2.2
1,408,698	+		GFF1385	0.27	-1.8
1,408,698	+		GFF1385	0.27	-0.8
1,408,698	+		GFF1385	0.27	+1.2
1,408,698	+		GFF1385	0.27	-1.5
1,408,698	+		GFF1385	0.27	-1.4
1,408,698	+		GFF1385	0.27	-1.3
1,408,701	-		GFF1385	0.28	-0.4
1,408,701	-		GFF1385	0.28	+0.1
1,408,701	-		GFF1385	0.28	+0.7
1,408,706	-		GFF1385	0.29	-1.1
1,408,706	-		GFF1385	0.29	-0.7
1,408,706	-		GFF1385	0.29	+2.1
1,408,706	-		GFF1385	0.29	-1.1
1,408,706	-		GFF1385	0.29	+0.3
1,408,706	-		GFF1385	0.29	-0.8
1,408,773	-		GFF1385	0.39	-0.7
1,408,774	+		GFF1385	0.39	+0.1
1,408,783	+		GFF1385	0.40	-0.5
1,408,791	-		GFF1385	0.41	-0.6
1,408,797	+		GFF1385	0.42	-2.6
1,408,797	+		GFF1385	0.42	+0.1
1,408,797	+		GFF1385	0.42	+0.3
1,408,797	+		GFF1385	0.42	-0.7
1,408,805	-		GFF1385	0.44	+0.9
1,408,805	-		GFF1385	0.44	-0.8
1,408,805	-		GFF1385	0.44	-2.4
1,408,805	-		GFF1385	0.44	-0.8
1,408,810	-		GFF1385	0.44	-1.2
1,408,815	-		GFF1385	0.45	+1.3
1,408,825	-		GFF1385	0.47	-0.1
1,408,835	+		GFF1385	0.48	+0.3
1,408,843	+		GFF1385	0.49	-0.1
1,408,843	+		GFF1385	0.49	-0.5
1,408,843	+		GFF1385	0.49	-0.1
1,408,855	+		GFF1385	0.51	-0.2
1,408,856	-		GFF1385	0.51	+0.3
1,408,909	+		GFF1385	0.59	+1.1
1,408,924	+		GFF1385	0.61	-0.9
1,408,930	-		GFF1385	0.62	+0.1
1,408,934	+		GFF1385	0.63	+0.9
1,408,934	+		GFF1385	0.63	-2.3
1,408,934	+		GFF1385	0.63	-0.7
1,408,939	+		GFF1385	0.64	-0.2
1,408,939	+		GFF1385	0.64	+0.4
1,408,939	+		GFF1385	0.64	+0.2
1,408,939	+		GFF1385	0.64	-0.0
1,408,939	+		GFF1385	0.64	+0.2
1,408,939	+		GFF1385	0.64	+1.3
1,408,939	+		GFF1385	0.64	-0.3
1,408,939	+		GFF1385	0.64	-2.2
1,408,939	+		GFF1385	0.64	-1.4
1,408,939	+		GFF1385	0.64	+0.4
1,408,939	+		GFF1385	0.64	+0.9
1,408,939	+		GFF1385	0.64	+0.6
1,408,939	+		GFF1385	0.64	+0.2
1,408,939	+		GFF1385	0.64	-0.5
1,408,939	+		GFF1385	0.64	+1.4
1,408,939	+		GFF1385	0.64	+1.6
1,408,939	+		GFF1385	0.64	-1.4
1,408,939	+		GFF1385	0.64	-0.3
1,408,939	+		GFF1385	0.64	+0.5
1,408,947	-		GFF1385	0.65	+0.2
1,408,947	-		GFF1385	0.65	+0.1
1,408,947	-		GFF1385	0.65	-1.7
1,408,947	-		GFF1385	0.65	+0.6
1,408,947	-		GFF1385	0.65	-0.2
1,408,947	-		GFF1385	0.65	-0.7
1,408,947	-		GFF1385	0.65	+0.4
1,408,947	-		GFF1385	0.65	-0.4
1,408,947	-		GFF1385	0.65	+0.9
1,408,947	-		GFF1385	0.65	+1.4
1,408,947	-		GFF1385	0.65	-0.5
1,408,947	-		GFF1385	0.65	-0.2
1,408,947	-		GFF1385	0.65	-0.2
1,408,947	-		GFF1385	0.65	+1.2
1,408,952	-		GFF1385	0.66	-0.3
1,408,963	+		GFF1385	0.67	+0.5
1,408,968	+		GFF1385	0.68	-0.9
1,408,973	+		GFF1385	0.69	-1.9
1,408,989	-		GFF1385	0.71	+0.1
1,409,011	+		GFF1385	0.74	+0.0
1,409,011	+		GFF1385	0.74	-1.1
1,409,019	-		GFF1385	0.76	-0.2
1,409,035	-		GFF1385	0.78	+0.3
1,409,101	+		GFF1385	0.88	-0.3
1,409,101	+		GFF1385	0.88	-2.3
1,409,106	+		GFF1385	0.89	-0.9
1,409,109	-		GFF1385	0.89	-0.4
1,409,109	-		GFF1385	0.89	-1.3
1,409,109	-		GFF1385	0.89	-1.0
1,409,118	+				+1.9
1,409,119	-				-1.8
1,409,181	+				-1.6
1,409,181	+				-0.5
1,409,181	+				-0.3
1,409,189	-				+1.3
1,409,189	-				-0.6
1,409,197	-				+0.3
1,409,207	+				-1.3
1,409,209	-				+0.6
1,409,218	-				+0.3
1,409,232	-				+1.2
1,409,239	-				+0.3
1,409,241	-				+1.4
1,409,241	-				+0.1
1,409,241	-				+1.7
1,409,241	-				-1.5
1,409,241	-				+0.9
1,409,259	-				-0.6
1,409,261	-				-1.2
1,409,274	-				-1.2
1,409,297	-				+0.4
1,409,304	+				+0.7
1,409,309	+				-3.0
1,409,309	+				-1.1
1,409,317	-				+0.5
1,409,317	-				+0.1
1,409,322	-				-2.6
1,409,344	+				-0.8
1,409,344	+				-1.7
1,409,347	-				-1.9
1,409,426	+		GFF1386	0.11	-0.4
1,409,431	+		GFF1386	0.11	+0.1
1,409,434	-		GFF1386	0.11	+0.8
1,409,434	-		GFF1386	0.11	-0.3
1,409,436	+		GFF1386	0.11	-0.3
1,409,444	-		GFF1386	0.11	+1.1
1,409,444	-		GFF1386	0.11	+0.4
1,409,451	+		GFF1386	0.12	-0.2
1,409,451	+		GFF1386	0.12	-2.0
1,409,451	+		GFF1386	0.12	-0.8
1,409,451	+		GFF1386	0.12	+1.1
1,409,456	+		GFF1386	0.12	-2.6
1,409,459	-		GFF1386	0.12	-1.4
1,409,461	+		GFF1386	0.12	+1.4
1,409,461	+		GFF1386	0.12	-0.6
1,409,462	+		GFF1386	0.12	-0.2
1,409,462	+		GFF1386	0.12	-0.8
1,409,462	+		GFF1386	0.12	-1.3
1,409,462	+		GFF1386	0.12	+0.5
1,409,463	+		GFF1386	0.12	-0.5
1,409,463	+		GFF1386	0.12	-0.4
1,409,469	-		GFF1386	0.12	-1.2
1,409,470	-		GFF1386	0.12	-0.3
1,409,470	-		GFF1386	0.12	-2.1
1,409,470	-		GFF1386	0.12	+0.1
1,409,470	-		GFF1386	0.12	-0.3
1,409,470	-		GFF1386	0.12	-0.6
1,409,471	-		GFF1386	0.12	+1.3
1,409,471	-		GFF1386	0.12	+0.0
1,409,472	+		GFF1386	0.12	-1.1
1,409,478	+		GFF1386	0.13	-1.2
1,409,483	+		GFF1386	0.13	-0.6
1,409,491	-		GFF1386	0.13	+1.1
1,409,491	-		GFF1386	0.13	+0.4
1,409,492	-		GFF1386	0.13	-0.1
1,409,497	+		GFF1386	0.14	+0.5
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1,410,084	+		GFF1386	0.38	-1.7
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