Strain Fitness in Sphingobium sp. HT1-2 around GFF1373

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,395,360	-		GFF1371	0.87	+0.8
1,395,360	-		GFF1371	0.87	-1.1
1,395,363	+		GFF1371	0.87	+0.4
1,395,366	-		GFF1371	0.87	+0.1
1,395,366	-		GFF1371	0.87	-0.4
1,395,366	-		GFF1371	0.87	+0.6
1,395,371	-		GFF1371	0.88	-0.4
1,395,393	-		GFF1371	0.90	+0.7
1,395,406	+				-0.2
1,395,416	+				+1.3
1,395,416	+				-0.6
1,395,417	-				+0.2
1,395,419	-				+0.5
1,395,424	-				+0.4
1,395,445	+				-0.1
1,395,460	+				-2.2
1,395,464	+				+1.4
1,395,464	+				-0.7
1,395,491	+				+0.1
1,395,498	-				-0.4
1,395,516	-				+1.2
1,395,516	-				+0.3
1,395,518	+				+0.1
1,395,518	+				-0.9
1,395,518	+				+0.6
1,395,561	-				-1.4
1,395,590	+				+1.0
1,395,598	+		GFF1372	0.10	-0.8
1,395,598	-		GFF1372	0.10	+0.1
1,395,598	-		GFF1372	0.10	+0.5
1,395,601	-		GFF1372	0.11	-0.9
1,395,631	+		GFF1372	0.14	+0.9
1,395,633	-		GFF1372	0.14	-1.6
1,395,649	+		GFF1372	0.16	-0.1
1,395,657	-		GFF1372	0.17	-1.0
1,395,667	-		GFF1372	0.19	+0.3
1,395,700	+		GFF1372	0.23	+0.7
1,395,708	-		GFF1372	0.24	+0.6
1,395,748	+		GFF1372	0.28	-1.9
1,395,787	+		GFF1372	0.33	+1.1
1,395,792	+		GFF1372	0.34	+0.1
1,395,813	+		GFF1372	0.36	+0.8
1,395,816	-		GFF1372	0.37	-0.9
1,395,823	-		GFF1372	0.37	-0.4
1,395,831	+		GFF1372	0.38	-1.4
1,395,831	+		GFF1372	0.38	-0.7
1,395,839	-		GFF1372	0.39	-0.2
1,395,841	+		GFF1372	0.40	+0.9
1,395,841	+		GFF1372	0.40	-0.3
1,395,841	+		GFF1372	0.40	-1.3
1,395,841	-		GFF1372	0.40	-0.4
1,395,849	-		GFF1372	0.41	-0.6
1,395,849	-		GFF1372	0.41	+0.4
1,395,849	-		GFF1372	0.41	+0.1
1,395,853	+		GFF1372	0.41	-1.8
1,395,861	-		GFF1372	0.42	-3.1
1,395,861	-		GFF1372	0.42	-0.3
1,395,888	+		GFF1372	0.45	+0.7
1,395,888	+		GFF1372	0.45	-0.6
1,395,898	+		GFF1372	0.47	+1.5
1,395,899	+		GFF1372	0.47	-1.9
1,395,905	+		GFF1372	0.47	-0.8
1,395,906	-		GFF1372	0.48	-2.1
1,395,913	-		GFF1372	0.48	-0.2
1,395,913	-		GFF1372	0.48	-1.9
1,395,918	-		GFF1372	0.49	-0.9
1,395,930	+		GFF1372	0.50	-1.4
1,395,938	-		GFF1372	0.51	-1.1
1,395,938	-		GFF1372	0.51	-2.4
1,395,938	-		GFF1372	0.51	-0.7
1,395,940	+		GFF1372	0.52	-0.5
1,395,940	+		GFF1372	0.52	+0.0
1,395,940	+		GFF1372	0.52	-0.6
1,395,945	+		GFF1372	0.52	+0.0
1,395,948	-		GFF1372	0.53	+1.0
1,395,948	-		GFF1372	0.53	+1.3
1,395,948	-		GFF1372	0.53	+0.4
1,395,965	+		GFF1372	0.55	-1.9
1,395,973	-		GFF1372	0.56	+1.1
1,395,997	+		GFF1372	0.59	+0.4
1,395,997	-		GFF1372	0.59	+0.3
1,396,009	+		GFF1372	0.60	+0.4
1,396,030	+		GFF1372	0.63	-1.1
1,396,045	+		GFF1372	0.64	-2.7
1,396,048	-		GFF1372	0.65	+0.9
1,396,053	-		GFF1372	0.65	-0.2
1,396,091	+		GFF1372	0.70	-0.4
1,396,096	+		GFF1372	0.71	-1.2
1,396,096	+		GFF1372	0.71	-1.8
1,396,098	-		GFF1372	0.71	-0.9
1,396,104	-		GFF1372	0.72	-1.9
1,396,104	-		GFF1372	0.72	+0.0
1,396,104	-		GFF1372	0.72	-0.9
1,396,104	-		GFF1372	0.72	+0.4
1,396,127	+		GFF1372	0.74	+1.3
1,396,127	+		GFF1372	0.74	+1.1
1,396,127	+		GFF1372	0.74	+0.7
1,396,135	-		GFF1372	0.75	-0.7
1,396,183	-		GFF1372	0.81	+0.4
1,396,216	-		GFF1372	0.85	-1.9
1,396,241	-		GFF1372	0.88	+1.1
1,396,252	+		GFF1372	0.89	-0.2
1,396,373	-				-0.3
1,396,373	-				-1.0
1,396,375	+				+2.4
1,396,375	+				+0.2
1,396,383	-				-1.3
1,396,422	-				-0.1
1,396,422	-				-1.1
1,396,429	-				+0.7
1,396,459	-				-0.1
1,396,459	-				+0.9
1,396,482	+		GFF1373	0.11	-0.6
1,396,482	+		GFF1373	0.11	-0.4
1,396,487	+		GFF1373	0.12	-2.0
1,396,495	-		GFF1373	0.12	-0.2
1,396,499	-		GFF1373	0.13	+3.1
1,396,528	+		GFF1373	0.15	+0.9
1,396,528	+		GFF1373	0.15	-0.4
1,396,580	-		GFF1373	0.20	-0.8
1,396,610	+		GFF1373	0.22	+0.3
1,396,630	+		GFF1373	0.24	-2.4
1,396,633	-		GFF1373	0.24	-0.1
1,396,638	-		GFF1373	0.25	+0.1
1,396,645	-		GFF1373	0.25	+0.8
1,396,647	+		GFF1373	0.26	+0.6
1,396,651	-		GFF1373	0.26	-0.5
1,396,655	-		GFF1373	0.26	+1.3
1,396,655	-		GFF1373	0.26	-0.0
1,396,707	+		GFF1373	0.31	-0.4
1,396,707	+		GFF1373	0.31	-0.4
1,396,707	+		GFF1373	0.31	+1.3
1,396,715	-		GFF1373	0.31	-0.8
1,396,827	+		GFF1373	0.41	-2.0
1,396,836	+		GFF1373	0.42	-0.8
1,396,842	+		GFF1373	0.42	+0.2
1,396,850	+		GFF1373	0.43	+1.7
1,396,888	-		GFF1373	0.46	+0.4
1,396,888	-		GFF1373	0.46	+0.9
1,396,893	+		GFF1373	0.47	-1.6
1,396,893	+		GFF1373	0.47	+1.0
1,396,921	-		GFF1373	0.49	+0.8
1,396,966	+		GFF1373	0.53	+0.4
1,396,969	-		GFF1373	0.53	+0.6
1,396,971	+		GFF1373	0.54	+0.7
1,396,979	-		GFF1373	0.54	+0.3
1,397,000	-		GFF1373	0.56	+2.0
1,397,025	+		GFF1373	0.58	+1.3
1,397,025	+		GFF1373	0.58	+0.4
1,397,101	+		GFF1373	0.65	+1.1
1,397,103	+		GFF1373	0.65	-0.2
1,397,103	+		GFF1373	0.65	-0.2
1,397,103	+		GFF1373	0.65	+0.3
1,397,103	+		GFF1373	0.65	-0.2
1,397,111	-		GFF1373	0.66	+0.4
1,397,111	-		GFF1373	0.66	+0.2
1,397,124	+		GFF1373	0.67	-0.3
1,397,139	+		GFF1373	0.68	-0.7
1,397,162	+		GFF1373	0.70	+0.3
1,397,189	+		GFF1373	0.72	-0.7
1,397,196	-		GFF1373	0.73	-1.3
1,397,263	+		GFF1373	0.79	-0.6
1,397,276	-		GFF1373	0.80	+0.4
1,397,294	-		GFF1373	0.82	+0.6
1,397,294	-		GFF1373	0.82	-0.7
1,397,400	-				-0.4
1,397,439	+				-0.6
1,397,501	+				+1.4
1,397,506	+				+0.2
1,397,516	+				+0.3
1,397,534	-				+0.1
1,397,534	-				-1.4
1,397,564	-				+3.3
1,397,638	-				-0.3
1,397,654	+				-0.4
1,397,665	+		GFF1374	0.11	-1.9
1,397,749	+		GFF1374	0.18	-0.5
1,397,759	+		GFF1374	0.19	+1.5
1,397,760	+		GFF1374	0.19	+0.4
1,397,845	-		GFF1374	0.26	+1.3
1,397,876	+		GFF1374	0.28	-1.9
1,397,877	+		GFF1374	0.28	+1.2
1,397,877	+		GFF1374	0.28	-1.2
1,397,888	+		GFF1374	0.29	+0.6
1,397,918	+		GFF1374	0.32	+0.6
1,397,918	+		GFF1374	0.32	+0.1
1,397,918	+		GFF1374	0.32	-1.9
1,397,918	+		GFF1374	0.32	-1.2
1,397,926	-		GFF1374	0.33	+0.3
1,397,958	+		GFF1374	0.35	-0.6
1,397,958	+		GFF1374	0.35	+0.2
1,397,966	-		GFF1374	0.36	+1.0
1,397,966	-		GFF1374	0.36	+0.3
1,398,003	+		GFF1374	0.39	+0.8
1,398,007	-		GFF1374	0.39	+0.1
1,398,011	-		GFF1374	0.40	-1.2
1,398,011	-		GFF1374	0.40	+0.1
1,398,056	+		GFF1374	0.43	-1.1
1,398,073	+		GFF1374	0.45	+0.2
1,398,121	-		GFF1374	0.49	-0.7
1,398,150	-		GFF1374	0.51	-0.4
1,398,157	+		GFF1374	0.52	+0.6
1,398,167	+		GFF1374	0.53	-0.3
1,398,167	+		GFF1374	0.53	+1.1
1,398,167	+		GFF1374	0.53	+1.2
1,398,175	-		GFF1374	0.53	+2.0
1,398,185	+		GFF1374	0.54	-0.4
1,398,197	+		GFF1374	0.55	-0.5
1,398,198	+		GFF1374	0.55	+0.3
1,398,205	-		GFF1374	0.56	-1.4
1,398,205	-		GFF1374	0.56	+0.2
1,398,206	-		GFF1374	0.56	-1.0
1,398,214	-		GFF1374	0.57	-0.1
1,398,242	+		GFF1374	0.59	+0.3
1,398,242	+		GFF1374	0.59	-0.1
1,398,242	+		GFF1374	0.59	-0.9
1,398,242	+		GFF1374	0.59	+0.1
1,398,242	+		GFF1374	0.59	+2.0
1,398,242	+		GFF1374	0.59	-1.3
1,398,250	-		GFF1374	0.60	-1.2
1,398,250	-		GFF1374	0.60	-0.6
1,398,250	-		GFF1374	0.60	-0.2
1,398,250	-		GFF1374	0.60	+1.1
1,398,332	+		GFF1374	0.66	-0.4
1,398,340	-		GFF1374	0.67	+0.5
1,398,340	-		GFF1374	0.67	+0.0
1,398,341	+		GFF1374	0.67	+0.6
1,398,345	+		GFF1374	0.68	-0.1
1,398,353	-		GFF1374	0.68	+0.8
1,398,368	-		GFF1374	0.69	+0.1
1,398,372	+		GFF1374	0.70	+0.7
1,398,377	+		GFF1374	0.70	-2.4
1,398,379	+		GFF1374	0.70	-0.0
1,398,387	-		GFF1374	0.71	-0.7
1,398,395	+		GFF1374	0.72	-0.6
1,398,421	+		GFF1374	0.74	-0.3
1,398,429	-		GFF1374	0.74	-0.1
1,398,459	+		GFF1374	0.77	-1.3
1,398,465	+		GFF1374	0.78	-1.9
1,398,473	-		GFF1374	0.78	-0.4
1,398,475	+		GFF1374	0.78	+0.4
1,398,502	+		GFF1374	0.81	-0.9
1,398,503	-		GFF1374	0.81	+0.1