Strain Fitness in Sphingobium sp. HT1-2 around GFF1285

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,313,328	+		GFF1284	0.46	-2.7
1,313,333	+		GFF1284	0.46	+0.3
1,313,336	-		GFF1284	0.46	-1.4
1,313,342	+		GFF1284	0.47	-0.2
1,313,346	-		GFF1284	0.47	-0.9
1,313,346	-		GFF1284	0.47	+1.3
1,313,374	+		GFF1284	0.49	+1.2
1,313,374	+		GFF1284	0.49	-1.9
1,313,374	+		GFF1284	0.49	+0.2
1,313,374	+		GFF1284	0.49	-0.7
1,313,377	-		GFF1284	0.49	+0.3
1,313,382	-		GFF1284	0.49	-1.1
1,313,382	-		GFF1284	0.49	+1.5
1,313,382	-		GFF1284	0.49	+0.5
1,313,382	-		GFF1284	0.49	+0.5
1,313,382	-		GFF1284	0.49	-0.5
1,313,382	-		GFF1284	0.49	+1.3
1,313,382	-		GFF1284	0.49	-0.6
1,313,382	-		GFF1284	0.49	+1.7
1,313,382	-		GFF1284	0.49	+1.5
1,313,382	-		GFF1284	0.49	+1.3
1,313,383	-		GFF1284	0.49	+0.3
1,313,390	-		GFF1284	0.49	-0.8
1,313,399	+		GFF1284	0.50	-2.4
1,313,426	+		GFF1284	0.51	+1.3
1,313,454	+		GFF1284	0.53	+0.1
1,313,454	+		GFF1284	0.53	-1.0
1,313,456	+		GFF1284	0.53	-0.4
1,313,478	+		GFF1284	0.54	-0.1
1,313,486	-		GFF1284	0.55	+0.7
1,313,489	-		GFF1284	0.55	+0.5
1,313,494	-		GFF1284	0.55	-0.4
1,313,496	-		GFF1284	0.55	+0.2
1,313,507	+		GFF1284	0.56	-0.1
1,313,507	+		GFF1284	0.56	-1.3
1,313,515	-		GFF1284	0.56	-0.2
1,313,515	-		GFF1284	0.56	-0.3
1,313,538	+		GFF1284	0.58	-0.1
1,313,541	-		GFF1284	0.58	+1.2
1,313,543	+		GFF1284	0.58	+0.6
1,313,543	+		GFF1284	0.58	-2.0
1,313,599	+		GFF1284	0.61	-1.8
1,313,604	+		GFF1284	0.61	+0.0
1,313,607	-		GFF1284	0.62	+0.1
1,313,607	-		GFF1284	0.62	-0.3
1,313,607	-		GFF1284	0.62	+0.2
1,313,609	+		GFF1284	0.62	-0.1
1,313,612	-		GFF1284	0.62	+0.3
1,313,639	+		GFF1284	0.63	-2.4
1,313,645	+		GFF1284	0.64	-0.9
1,313,645	+		GFF1284	0.64	-2.1
1,313,653	-		GFF1284	0.64	-0.2
1,313,653	-		GFF1284	0.64	-0.1
1,313,690	-		GFF1284	0.66	-1.4
1,313,690	-		GFF1284	0.66	-0.6
1,313,747	+		GFF1284	0.69	+2.0
1,313,754	-		GFF1284	0.70	-0.2
1,313,762	+		GFF1284	0.70	+0.2
1,313,790	-		GFF1284	0.72	+0.0
1,313,801	+		GFF1284	0.72	+1.5
1,313,801	+		GFF1284	0.72	-0.5
1,313,803	+		GFF1284	0.72	+0.6
1,313,803	+		GFF1284	0.72	+0.2
1,313,813	-		GFF1284	0.73	+0.6
1,313,822	+		GFF1284	0.73	-0.1
1,313,827	+		GFF1284	0.74	-2.3
1,313,832	+		GFF1284	0.74	-1.6
1,313,839	+		GFF1284	0.74	+0.2
1,313,840	-		GFF1284	0.74	-0.1
1,313,862	+		GFF1284	0.76	-0.4
1,313,865	+		GFF1284	0.76	+1.3
1,313,867	+		GFF1284	0.76	-1.1
1,313,870	-		GFF1284	0.76	+0.3
1,313,875	-		GFF1284	0.76	+0.2
1,313,875	-		GFF1284	0.76	-0.6
1,313,895	+		GFF1284	0.77	-1.8
1,313,898	+		GFF1284	0.78	+0.0
1,313,928	-		GFF1284	0.79	+0.7
1,313,958	+		GFF1284	0.81	+0.3
1,313,979	-		GFF1284	0.82	-1.4
1,313,991	-		GFF1284	0.83	-2.0
1,313,991	-		GFF1284	0.83	-0.9
1,313,991	-		GFF1284	0.83	+0.2
1,313,998	-		GFF1284	0.83	-0.9
1,314,044	-		GFF1284	0.86	-0.8
1,314,044	-		GFF1284	0.86	-1.1
1,314,046	+		GFF1284	0.86	+1.3
1,314,063	+		GFF1284	0.87	-1.7
1,314,099	+		GFF1284	0.89	-0.6
1,314,099	+		GFF1284	0.89	+1.0
1,314,107	-		GFF1284	0.89	-1.5
1,314,118	+		GFF1284	0.90	-0.8
1,314,118	+		GFF1284	0.90	+0.6
1,314,118	+		GFF1284	0.90	+0.1
1,314,118	+		GFF1284	0.90	+1.6
1,314,125	+				+0.1
1,314,126	-				+0.2
1,314,139	+				+1.4
1,314,147	+				-0.1
1,314,147	+				-0.3
1,314,157	+				+1.1
1,314,163	+				-0.9
1,314,163	+				+1.1
1,314,235	+				+0.3
1,314,235	+				+0.3
1,314,243	-				-2.0
1,314,251	-				+1.3
1,314,254	+				-0.5
1,314,266	-				-1.4
1,314,266	-				-2.1
1,314,268	-				-0.0
1,314,320	+				-0.9
1,314,325	-				-0.2
1,314,406	+		GFF1285	0.33	-0.6
1,314,406	+		GFF1285	0.33	+0.0
1,314,414	-		GFF1285	0.35	-0.3
1,314,414	-		GFF1285	0.35	-0.1
1,314,415	+		GFF1285	0.36	+0.0
1,314,418	-		GFF1285	0.37	-0.7
1,314,419	+		GFF1285	0.37	-0.1
1,314,442	+		GFF1285	0.44	+0.3
1,314,487	-		GFF1285	0.58	-0.9
1,314,490	-		GFF1285	0.58	-0.7
1,314,502	+		GFF1285	0.62	-0.3
1,314,508	+		GFF1285	0.64	-0.6
1,314,509	+		GFF1285	0.64	+1.1
1,314,518	-		GFF1285	0.67	-0.2
1,314,522	+		GFF1285	0.68	-0.3
1,314,522	+		GFF1285	0.68	-0.0
1,314,522	+		GFF1285	0.68	-0.1
1,314,522	+		GFF1285	0.68	-0.5
1,314,530	-		GFF1285	0.71	-0.1
1,314,530	-		GFF1285	0.71	+0.5
1,314,530	-		GFF1285	0.71	-2.3
1,314,530	-		GFF1285	0.71	-0.6
1,314,541	+		GFF1285	0.74	-0.2
1,314,549	-		GFF1285	0.76	+1.9
1,314,549	-		GFF1285	0.76	+1.5
1,314,583	+		GFF1285	0.87	+0.3
1,314,590	+		GFF1285	0.89	-1.8
1,314,608	-				+0.8
1,314,615	-				+0.6
1,314,645	+				-0.2
1,314,647	+				-0.3
1,314,655	+				+0.6
1,314,663	-				-0.6
1,314,663	-				-1.5
1,314,677	-				+1.2
1,314,711	+				+1.6
1,314,736	+		GFF1286	0.14	+0.9
1,314,749	-		GFF1286	0.17	-1.8
1,314,756	-		GFF1286	0.18	-0.4
1,314,832	-		GFF1286	0.34	+1.1
1,314,842	+		GFF1286	0.37	+0.1
1,314,854	-		GFF1286	0.39	-2.1
1,314,872	+		GFF1286	0.43	+0.4
1,314,880	-		GFF1286	0.45	+0.9
1,314,880	-		GFF1286	0.45	-1.8
1,314,918	+		GFF1286	0.53	-0.3
1,314,919	-		GFF1286	0.53	-1.5
1,314,987	+		GFF1286	0.68	-1.1
1,315,018	+		GFF1286	0.74	-0.3
1,315,062	-		GFF1286	0.84	+0.9
1,315,111	+				-1.4
1,315,120	+				-0.7
1,315,125	-				-1.9
1,315,128	-				-1.6
1,315,145	+				+1.2
1,315,145	+				-0.6
1,315,145	-				-0.6
1,315,161	-				+0.3
1,315,187	+				-0.9
1,315,187	+				-0.4
1,315,187	+				+0.0
1,315,187	+				+0.4
1,315,187	+				+1.1
1,315,195	-				-0.2
1,315,195	-				-1.4
1,315,195	-				-0.3
1,315,195	-				-1.7
1,315,195	-				-1.1
1,315,218	+		GFF1287	0.12	-1.1
1,315,218	+		GFF1287	0.12	+0.7
1,315,218	+		GFF1287	0.12	-0.3
1,315,226	-		GFF1287	0.14	-0.2
1,315,232	+		GFF1287	0.15	-0.5
1,315,242	+		GFF1287	0.16	-1.6
1,315,281	+		GFF1287	0.23	+0.9
1,315,281	+		GFF1287	0.23	-0.3
1,315,283	+		GFF1287	0.24	-0.1
1,315,283	+		GFF1287	0.24	-1.5
1,315,289	-		GFF1287	0.25	+0.2
1,315,291	-		GFF1287	0.25	-1.1
1,315,291	-		GFF1287	0.25	-1.6
1,315,291	-		GFF1287	0.25	-1.5
1,315,291	-		GFF1287	0.25	-0.6
1,315,292	-		GFF1287	0.25	+0.7
1,315,294	-		GFF1287	0.25	-0.6
1,315,294	-		GFF1287	0.25	-2.1
1,315,309	-		GFF1287	0.28	+1.4
1,315,322	+		GFF1287	0.30	-0.3
1,315,329	+		GFF1287	0.32	-1.3
1,315,329	+		GFF1287	0.32	-0.4
1,315,388	+		GFF1287	0.42	+0.5
1,315,391	-		GFF1287	0.42	+0.5
1,315,392	+		GFF1287	0.43	-0.3
1,315,394	+		GFF1287	0.43	-0.8
1,315,394	+		GFF1287	0.43	+0.3
1,315,402	-		GFF1287	0.44	-0.1
1,315,406	+		GFF1287	0.45	+0.2
1,315,416	+		GFF1287	0.47	-2.3
1,315,419	-		GFF1287	0.47	+1.7
1,315,429	+		GFF1287	0.49	-1.4
1,315,429	+		GFF1287	0.49	+0.5
1,315,429	+		GFF1287	0.49	+0.4
1,315,434	+		GFF1287	0.50	+1.0
1,315,434	+		GFF1287	0.50	-1.4
1,315,434	+		GFF1287	0.50	+0.6
1,315,434	+		GFF1287	0.50	-0.4
1,315,434	+		GFF1287	0.50	+0.3
1,315,434	+		GFF1287	0.50	-0.3
1,315,434	+		GFF1287	0.50	-0.4
1,315,434	+		GFF1287	0.50	-0.7
1,315,434	+		GFF1287	0.50	-2.5
1,315,434	+		GFF1287	0.50	-0.5
1,315,434	+		GFF1287	0.50	-2.6
1,315,434	+		GFF1287	0.50	-0.6
1,315,434	+		GFF1287	0.50	-0.3
1,315,434	+		GFF1287	0.50	+0.2
1,315,434	+		GFF1287	0.50	-0.8
1,315,434	+		GFF1287	0.50	+0.3
1,315,434	+		GFF1287	0.50	-1.1
1,315,434	+		GFF1287	0.50	-0.2
1,315,434	+		GFF1287	0.50	+1.3
1,315,434	+		GFF1287	0.50	+0.2
1,315,434	+		GFF1287	0.50	-1.6
1,315,437	-		GFF1287	0.51	+0.5
1,315,437	-		GFF1287	0.51	-1.1
1,315,437	-		GFF1287	0.51	-0.8
1,315,440	-		GFF1287	0.51	-0.8
1,315,442	-		GFF1287	0.51	-0.7
1,315,442	-		GFF1287	0.51	+0.7
1,315,442	-		GFF1287	0.51	+1.2
1,315,442	-		GFF1287	0.51	-1.5
1,315,442	-		GFF1287	0.51	+0.5
1,315,442	-		GFF1287	0.51	-1.7
1,315,442	-		GFF1287	0.51	-1.0
1,315,442	-		GFF1287	0.51	-0.7
1,315,442	-		GFF1287	0.51	-2.0
1,315,442	-		GFF1287	0.51	-2.3
1,315,442	-		GFF1287	0.51	+0.3
1,315,442	-		GFF1287	0.51	-1.8
1,315,442	-		GFF1287	0.51	-0.8
1,315,442	-		GFF1287	0.51	-0.4
1,315,442	-		GFF1287	0.51	-0.2
1,315,442	-		GFF1287	0.51	-0.2
1,315,455	+		GFF1287	0.54	+1.5
1,315,456	-		GFF1287	0.54	-1.1
1,315,456	-		GFF1287	0.54	-2.7
1,315,456	-		GFF1287	0.54	-0.4
1,315,458	-		GFF1287	0.54	-1.4
1,315,463	-		GFF1287	0.55	+0.6
1,315,469	+		GFF1287	0.56	-0.3
1,315,482	-		GFF1287	0.58	-0.6
1,315,516	+		GFF1287	0.64	-0.2
1,315,550	+		GFF1287	0.70	+0.9
1,315,557	+		GFF1287	0.72	+0.6
1,315,557	+		GFF1287	0.72	-1.0
1,315,557	+		GFF1287	0.72	+0.0
1,315,557	+		GFF1287	0.72	+1.5
1,315,557	+		GFF1287	0.72	+0.6
1,315,557	+		GFF1287	0.72	+0.4
1,315,557	+		GFF1287	0.72	-0.1
1,315,557	+		GFF1287	0.72	-0.2
1,315,557	+		GFF1287	0.72	-2.8
1,315,557	+		GFF1287	0.72	+1.4
1,315,558	-		GFF1287	0.72	-1.3
1,315,565	-		GFF1287	0.73	-2.1
1,315,565	-		GFF1287	0.73	-0.6
1,315,565	-		GFF1287	0.73	-1.6
1,315,569	+		GFF1287	0.74	-2.1
1,315,590	+		GFF1287	0.77	+0.3
1,315,590	+		GFF1287	0.77	+0.4
1,315,597	+		GFF1287	0.79	-1.1
1,315,607	+		GFF1287	0.80	-0.1
1,315,607	+		GFF1287	0.80	-1.7
1,315,607	+		GFF1287	0.80	-0.1
1,315,607	+		GFF1287	0.80	-0.1
1,315,615	+		GFF1287	0.82	+0.3
1,315,615	+		GFF1287	0.82	-0.8
1,315,615	-		GFF1287	0.82	-0.9
1,315,615	-		GFF1287	0.82	-0.2
1,315,623	-		GFF1287	0.83	+0.7