Strain Fitness in Sphingobium sp. HT1-2 around GFF1284

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,311,503	-		GFF1282	0.58	-1.8
1,311,516	+		GFF1282	0.59	-0.1
1,311,521	+		GFF1282	0.60	-0.5
1,311,524	-		GFF1282	0.60	+0.6
1,311,533	+		GFF1282	0.61	+0.3
1,311,538	+		GFF1282	0.62	-1.4
1,311,538	+		GFF1282	0.62	+1.1
1,311,539	+		GFF1282	0.62	-0.1
1,311,546	-		GFF1282	0.63	-0.1
1,311,546	-		GFF1282	0.63	-1.3
1,311,548	+		GFF1282	0.63	-0.8
1,311,548	+		GFF1282	0.63	+1.7
1,311,548	+		GFF1282	0.63	+2.0
1,311,558	+		GFF1282	0.64	-1.3
1,311,564	+		GFF1282	0.65	-1.7
1,311,572	-		GFF1282	0.66	-0.6
1,311,572	-		GFF1282	0.66	-0.6
1,311,572	-		GFF1282	0.66	-1.1
1,311,572	-		GFF1282	0.66	-0.6
1,311,597	+		GFF1282	0.68	-0.3
1,311,597	+		GFF1282	0.68	+1.7
1,311,644	-		GFF1282	0.74	-1.8
1,311,645	-		GFF1282	0.74	-0.1
1,311,653	+		GFF1282	0.75	-0.9
1,311,653	+		GFF1282	0.75	-1.0
1,311,653	+		GFF1282	0.75	-1.6
1,311,661	-		GFF1282	0.75	+0.2
1,311,661	-		GFF1282	0.75	+0.6
1,311,661	-		GFF1282	0.75	+0.5
1,311,661	-		GFF1282	0.75	+1.5
1,311,663	+		GFF1282	0.76	+0.1
1,311,671	-		GFF1282	0.77	-0.4
1,311,671	-		GFF1282	0.77	-0.2
1,311,681	+		GFF1282	0.78	-1.0
1,311,701	+		GFF1282	0.80	-0.6
1,311,703	-		GFF1282	0.80	+1.3
1,311,722	+		GFF1282	0.82	-2.1
1,311,728	-		GFF1282	0.83	-0.8
1,311,751	-		GFF1282	0.86	-0.1
1,311,757	+		GFF1282	0.86	-1.4
1,311,757	-		GFF1282	0.86	+0.6
1,311,778	+		GFF1282	0.89	-0.9
1,311,785	+		GFF1282	0.89	-0.5
1,311,787	-		GFF1282	0.90	+0.2
1,311,793	-				-0.2
1,311,805	+				-0.1
1,311,805	+				-0.9
1,311,805	+				+0.3
1,311,813	-				+0.6
1,311,824	-				+0.0
1,311,831	+				-0.8
1,311,836	+				-1.0
1,311,841	+				+0.9
1,311,844	-				-0.6
1,311,850	+				-1.6
1,311,862	+				+1.6
1,311,862	+				-0.2
1,311,870	-				-0.3
1,311,870	-				+0.6
1,311,873	+				-1.2
1,311,883	-				-1.9
1,311,883	-				+0.7
1,311,883	-				+0.7
1,311,883	-				-0.8
1,311,883	-				+0.1
1,311,883	-				-1.3
1,311,883	-				+0.1
1,311,883	-				-0.8
1,311,883	-				+0.4
1,311,883	-				-1.2
1,311,883	-				+0.0
1,311,883	-				-1.3
1,311,883	-				-0.1
1,311,883	-				+1.2
1,311,883	-				-1.7
1,311,883	-				+2.0
1,311,883	-				+0.6
1,311,889	-				+0.3
1,311,971	+				-0.7
1,312,001	+				+1.0
1,312,003	+				-2.0
1,312,009	-				+0.6
1,312,019	+				-0.3
1,312,019	+				-0.4
1,312,019	+				+0.2
1,312,019	+				+0.6
1,312,026	-				-1.4
1,312,027	-				-0.6
1,312,044	-				+1.0
1,312,066	-				-1.1
1,312,085	+				-0.1
1,312,085	+				-1.3
1,312,088	+				-0.8
1,312,095	-				-0.6
1,312,132	+		GFF1283	0.13	-1.1
1,312,151	+		GFF1283	0.18	-1.6
1,312,151	+		GFF1283	0.18	-1.3
1,312,174	-		GFF1283	0.23	-2.9
1,312,208	-		GFF1283	0.31	-1.6
1,312,225	-		GFF1283	0.35	-0.7
1,312,225	-		GFF1283	0.35	-2.4
1,312,246	+		GFF1283	0.40	+0.6
1,312,249	+		GFF1283	0.41	+0.8
1,312,250	-		GFF1283	0.41	+1.2
1,312,255	+		GFF1283	0.42	-1.2
1,312,255	+		GFF1283	0.42	-1.1
1,312,263	-		GFF1283	0.44	-0.0
1,312,273	+		GFF1283	0.47	-0.5
1,312,275	-		GFF1283	0.47	+0.0
1,312,307	+		GFF1283	0.55	+0.7
1,312,314	+		GFF1283	0.56	+0.6
1,312,371	+		GFF1283	0.70	-0.1
1,312,384	-		GFF1283	0.73	-0.8
1,312,395	+		GFF1283	0.75	-0.1
1,312,402	-		GFF1283	0.77	-0.9
1,312,403	-		GFF1283	0.77	-0.5
1,312,403	-		GFF1283	0.77	+0.4
1,312,403	-		GFF1283	0.77	+0.0
1,312,403	-		GFF1283	0.77	+0.1
1,312,403	-		GFF1283	0.77	+0.2
1,312,420	+		GFF1283	0.81	+0.0
1,312,420	+		GFF1283	0.81	+0.1
1,312,428	-		GFF1283	0.83	+0.1
1,312,428	-		GFF1283	0.83	-0.1
1,312,428	-		GFF1283	0.83	+0.0
1,312,428	-		GFF1283	0.83	-1.9
1,312,428	-		GFF1283	0.83	-0.6
1,312,428	-		GFF1283	0.83	-2.0
1,312,439	+		GFF1283	0.86	+0.4
1,312,439	+		GFF1283	0.86	+0.6
1,312,439	+		GFF1283	0.86	-1.5
1,312,440	+		GFF1283	0.86	-0.1
1,312,447	-		GFF1283	0.88	-1.5
1,312,447	-		GFF1283	0.88	+0.0
1,312,447	-		GFF1283	0.88	-1.4
1,312,447	-		GFF1283	0.88	+0.4
1,312,492	+				-1.6
1,312,502	-				+0.1
1,312,533	+				-1.0
1,312,537	-				-0.9
1,312,550	+				+0.3
1,312,555	+				-0.8
1,312,558	-				-0.3
1,312,558	-				-0.6
1,312,585	-				-0.6
1,312,585	-				+0.1
1,312,585	-				-0.1
1,312,598	+				-0.6
1,312,598	+				-0.6
1,312,606	-				-1.3
1,312,610	+				+0.1
1,312,610	+				-1.6
1,312,610	+				-0.3
1,312,615	+				+0.1
1,312,615	+				-0.1
1,312,615	+				+0.5
1,312,615	+				+0.2
1,312,620	+				-0.6
1,312,623	-				-0.5
1,312,623	-				-2.1
1,312,623	-				-0.1
1,312,623	-				+0.2
1,312,623	-				+0.2
1,312,623	-				+0.0
1,312,623	-				-1.7
1,312,628	-				-0.7
1,312,630	-				+0.1
1,312,644	+				-0.1
1,312,644	+				+0.6
1,312,644	+				-1.0
1,312,644	+				-0.3
1,312,644	+				+0.2
1,312,652	-				-0.5
1,312,652	-				-0.3
1,312,652	-				+0.1
1,312,652	-				-1.8
1,312,652	-				+0.6
1,312,653	+				-0.1
1,312,658	+				+0.5
1,312,658	+				-0.4
1,312,658	+				-0.7
1,312,658	+				+0.5
1,312,658	+				+0.6
1,312,658	+				+0.6
1,312,658	+				+0.9
1,312,658	+				+0.3
1,312,658	+				-1.0
1,312,658	+				+0.2
1,312,658	+				-0.5
1,312,658	+				+1.1
1,312,663	+				-0.4
1,312,663	+				+0.7
1,312,666	-				+1.4
1,312,666	-				+0.5
1,312,666	-				-0.1
1,312,666	-				-0.2
1,312,666	-				+0.2
1,312,666	-				-1.1
1,312,666	-				+0.1
1,312,666	-				-0.4
1,312,666	-				+0.3
1,312,666	-				-0.0
1,312,666	-				+0.2
1,312,666	-				-0.1
1,312,666	-				-2.5
1,312,666	-				-1.0
1,312,666	-				+1.0
1,312,666	-				-1.1
1,312,666	-				+0.9
1,312,666	-				-2.0
1,312,668	+				-2.7
1,312,668	+				-1.3
1,312,668	+				-0.1
1,312,668	+				-1.3
1,312,671	-				+0.8
1,312,687	+		GFF1284	0.10	-1.0
1,312,709	+		GFF1284	0.12	-0.9
1,312,714	+		GFF1284	0.12	+0.7
1,312,714	+		GFF1284	0.12	-1.7
1,312,714	+		GFF1284	0.12	-1.7
1,312,722	+		GFF1284	0.12	-0.6
1,312,722	+		GFF1284	0.12	-0.8
1,312,722	-		GFF1284	0.12	-1.8
1,312,744	-		GFF1284	0.14	+0.3
1,312,744	-		GFF1284	0.14	+1.7
1,312,751	-		GFF1284	0.14	-0.5
1,312,764	-		GFF1284	0.15	-0.4
1,312,793	+		GFF1284	0.16	-1.4
1,312,797	+		GFF1284	0.17	-0.9
1,312,801	-		GFF1284	0.17	+0.0
1,312,801	-		GFF1284	0.17	-2.6
1,312,803	+		GFF1284	0.17	+0.1
1,312,804	+		GFF1284	0.17	-1.6
1,312,810	-		GFF1284	0.17	-0.0
1,312,810	-		GFF1284	0.17	-0.4
1,312,812	+		GFF1284	0.17	-0.5
1,312,812	+		GFF1284	0.17	+1.9
1,312,812	-		GFF1284	0.17	+0.2
1,312,817	+		GFF1284	0.18	-0.2
1,312,817	+		GFF1284	0.18	-0.6
1,312,825	-		GFF1284	0.18	+1.0
1,312,825	-		GFF1284	0.18	-0.2
1,312,825	-		GFF1284	0.18	-1.3
1,312,852	+		GFF1284	0.20	-2.2
1,312,852	+		GFF1284	0.20	+1.0
1,312,860	-		GFF1284	0.20	-0.1
1,312,861	-		GFF1284	0.20	+0.4
1,312,899	+		GFF1284	0.22	-0.1
1,312,899	+		GFF1284	0.22	-0.2
1,312,899	+		GFF1284	0.22	-1.8
1,312,899	+		GFF1284	0.22	-0.4
1,312,899	+		GFF1284	0.22	+0.7
1,312,899	+		GFF1284	0.22	+0.1
1,312,899	+		GFF1284	0.22	-1.6
1,312,899	+		GFF1284	0.22	+0.4
1,312,899	+		GFF1284	0.22	+0.6
1,312,899	+		GFF1284	0.22	-0.1
1,312,899	+		GFF1284	0.22	-1.9
1,312,899	+		GFF1284	0.22	+0.3
1,312,899	+		GFF1284	0.22	+0.4
1,312,899	+		GFF1284	0.22	-1.6
1,312,907	-		GFF1284	0.23	+0.6
1,312,907	-		GFF1284	0.23	-1.4
1,312,907	-		GFF1284	0.23	+0.2
1,312,907	-		GFF1284	0.23	+0.3
1,312,907	-		GFF1284	0.23	-0.9
1,312,907	-		GFF1284	0.23	-1.8
1,312,907	-		GFF1284	0.23	-0.2
1,312,907	-		GFF1284	0.23	-0.3
1,312,907	-		GFF1284	0.23	-0.9
1,312,907	-		GFF1284	0.23	-0.6
1,312,907	-		GFF1284	0.23	-2.1
1,312,907	-		GFF1284	0.23	+0.2
1,312,907	-		GFF1284	0.23	-1.5
1,312,907	-		GFF1284	0.23	+0.4
1,312,907	-		GFF1284	0.23	-1.3
1,312,907	-		GFF1284	0.23	+0.1
1,312,907	-		GFF1284	0.23	+0.7
1,312,907	-		GFF1284	0.23	-1.1
1,312,907	-		GFF1284	0.23	-0.8
1,312,910	+		GFF1284	0.23	+1.1
1,312,927	+		GFF1284	0.24	-1.6
1,312,933	-		GFF1284	0.24	-0.1
1,312,933	-		GFF1284	0.24	+0.7
1,312,968	+		GFF1284	0.26	-0.5
1,312,994	-		GFF1284	0.28	+0.9
1,312,994	-		GFF1284	0.28	-0.6
1,313,004	-		GFF1284	0.28	-0.7
1,313,064	+		GFF1284	0.31	+0.4
1,313,082	+		GFF1284	0.32	-0.6
1,313,082	+		GFF1284	0.32	-0.4
1,313,090	-		GFF1284	0.33	-1.9
1,313,091	-		GFF1284	0.33	+0.1
1,313,092	-		GFF1284	0.33	-0.1
1,313,108	+		GFF1284	0.34	-1.3
1,313,108	+		GFF1284	0.34	-0.8
1,313,108	+		GFF1284	0.34	-0.3
1,313,112	+		GFF1284	0.34	-1.2
1,313,113	+		GFF1284	0.34	+0.3
1,313,120	-		GFF1284	0.34	+0.3
1,313,126	+		GFF1284	0.35	-0.1
1,313,126	+		GFF1284	0.35	+0.7
1,313,152	-		GFF1284	0.36	+0.5
1,313,162	-		GFF1284	0.37	-0.4
1,313,194	+		GFF1284	0.39	-0.1
1,313,202	-		GFF1284	0.39	-1.4
1,313,204	-		GFF1284	0.39	-1.1
1,313,204	-		GFF1284	0.39	+0.2
1,313,206	+		GFF1284	0.39	-1.0
1,313,224	+		GFF1284	0.40	-3.0
1,313,234	+		GFF1284	0.41	-0.5
1,313,234	+		GFF1284	0.41	-1.9
1,313,236	-		GFF1284	0.41	+0.1
1,313,241	+		GFF1284	0.41	-0.9
1,313,241	+		GFF1284	0.41	+0.1
1,313,241	+		GFF1284	0.41	-0.6
1,313,241	+		GFF1284	0.41	-0.6
1,313,241	+		GFF1284	0.41	-1.5
1,313,241	+		GFF1284	0.41	-0.3
1,313,241	-		GFF1284	0.41	+0.3
1,313,249	-		GFF1284	0.42	+0.3
1,313,249	-		GFF1284	0.42	-0.3
1,313,249	-		GFF1284	0.42	-0.6
1,313,249	-		GFF1284	0.42	+1.6
1,313,249	-		GFF1284	0.42	-0.2
1,313,249	-		GFF1284	0.42	+0.5
1,313,249	-		GFF1284	0.42	-1.4
1,313,264	-		GFF1284	0.42	-0.6
1,313,273	+		GFF1284	0.43	+1.1
1,313,273	+		GFF1284	0.43	+0.1
1,313,328	+		GFF1284	0.46	-2.7
1,313,333	+		GFF1284	0.46	+0.3
1,313,336	-		GFF1284	0.46	-1.4
1,313,342	+		GFF1284	0.47	-0.2
1,313,346	-		GFF1284	0.47	-0.9
1,313,346	-		GFF1284	0.47	+1.3
1,313,374	+		GFF1284	0.49	+1.2
1,313,374	+		GFF1284	0.49	-1.9
1,313,374	+		GFF1284	0.49	+0.2
1,313,374	+		GFF1284	0.49	-0.7
1,313,377	-		GFF1284	0.49	+0.3
1,313,382	-		GFF1284	0.49	-1.1
1,313,382	-		GFF1284	0.49	+1.5
1,313,382	-		GFF1284	0.49	+0.5
1,313,382	-		GFF1284	0.49	+0.5
1,313,382	-		GFF1284	0.49	-0.5
1,313,382	-		GFF1284	0.49	+1.3
1,313,382	-		GFF1284	0.49	-0.6
1,313,382	-		GFF1284	0.49	+1.7
1,313,382	-		GFF1284	0.49	+1.5
1,313,382	-		GFF1284	0.49	+1.3
1,313,383	-		GFF1284	0.49	+0.3
1,313,390	-		GFF1284	0.49	-0.8
1,313,399	+		GFF1284	0.50	-2.4
1,313,426	+		GFF1284	0.51	+1.3
1,313,454	+		GFF1284	0.53	+0.1
1,313,454	+		GFF1284	0.53	-1.0
1,313,456	+		GFF1284	0.53	-0.4
1,313,478	+		GFF1284	0.54	-0.1
1,313,486	-		GFF1284	0.55	+0.7
1,313,489	-		GFF1284	0.55	+0.5
1,313,494	-		GFF1284	0.55	-0.4
1,313,496	-		GFF1284	0.55	+0.2
1,313,507	+		GFF1284	0.56	-0.1
1,313,507	+		GFF1284	0.56	-1.3
1,313,515	-		GFF1284	0.56	-0.2
1,313,515	-		GFF1284	0.56	-0.3
1,313,538	+		GFF1284	0.58	-0.1
1,313,541	-		GFF1284	0.58	+1.2
1,313,543	+		GFF1284	0.58	+0.6
1,313,543	+		GFF1284	0.58	-2.0
1,313,599	+		GFF1284	0.61	-1.8
1,313,604	+		GFF1284	0.61	+0.0
1,313,607	-		GFF1284	0.62	+0.1
1,313,607	-		GFF1284	0.62	-0.3
1,313,607	-		GFF1284	0.62	+0.2
1,313,609	+		GFF1284	0.62	-0.1
1,313,612	-		GFF1284	0.62	+0.3
1,313,639	+		GFF1284	0.63	-2.4
1,313,645	+		GFF1284	0.64	-0.9
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1,314,139	+				+1.4
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1,314,147	+				-0.3
1,314,157	+				+1.1
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1,314,163	+				+1.1
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1,314,235	+				+0.3
1,314,243	-				-2.0
1,314,251	-				+1.3
1,314,254	+				-0.5
1,314,266	-				-1.4
1,314,266	-				-2.1
1,314,268	-				-0.0
1,314,320	+				-0.9
1,314,325	-				-0.2
1,314,406	+		GFF1285	0.33	-0.6
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1,314,419	+		GFF1285	0.37	-0.1
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1,314,615	-				+0.6
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1,314,647	+				-0.3
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1,314,663	-				-1.5
1,314,677	-				+1.2
1,314,711	+				+1.6
1,314,736	+		GFF1286	0.14	+0.9
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1,315,111	+				-1.4
1,315,120	+				-0.7
1,315,125	-				-1.9
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1,315,145	-				-0.6
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1,315,187	+				-0.4
1,315,187	+				+0.0
1,315,187	+				+0.4
1,315,187	+				+1.1
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1,315,195	-				-1.4
1,315,195	-				-0.3
1,315,195	-				-1.7
1,315,195	-				-1.1
1,315,218	+		GFF1287	0.12	-1.1
1,315,218	+		GFF1287	0.12	+0.7
1,315,218	+		GFF1287	0.12	-0.3
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1,315,232	+		GFF1287	0.15	-0.5
1,315,242	+		GFF1287	0.16	-1.6
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1,315,281	+		GFF1287	0.23	-0.3
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1,315,283	+		GFF1287	0.24	-1.5
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1,315,291	-		GFF1287	0.25	-1.6
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1,315,294	-		GFF1287	0.25	-0.6
1,315,294	-		GFF1287	0.25	-2.1