Strain Fitness in Sphingobium sp. HT1-2 around GFF1281

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,308,905	-		GFF1279	0.62	-1.1
1,308,912	+		GFF1279	0.63	+0.2
1,308,917	+		GFF1279	0.64	-1.8
1,308,917	+		GFF1279	0.64	+0.5
1,308,917	+		GFF1279	0.64	-1.8
1,308,922	+		GFF1279	0.64	-1.5
1,308,922	+		GFF1279	0.64	-0.3
1,308,922	+		GFF1279	0.64	-0.9
1,308,922	+		GFF1279	0.64	-1.2
1,308,922	+		GFF1279	0.64	+1.1
1,308,922	+		GFF1279	0.64	-0.1
1,308,927	+		GFF1279	0.64	+1.1
1,308,930	-		GFF1279	0.65	+0.9
1,308,930	-		GFF1279	0.65	-0.6
1,308,930	-		GFF1279	0.65	+0.6
1,308,935	-		GFF1279	0.65	+1.2
1,308,935	-		GFF1279	0.65	-1.2
1,308,935	-		GFF1279	0.65	-0.9
1,308,940	+		GFF1279	0.65	-0.2
1,308,954	+		GFF1279	0.67	-1.6
1,308,955	+		GFF1279	0.67	-0.3
1,308,958	-		GFF1279	0.67	+1.1
1,308,966	+		GFF1279	0.68	+0.9
1,308,966	+		GFF1279	0.68	+0.5
1,308,973	+		GFF1279	0.68	+0.4
1,309,009	+		GFF1279	0.71	-0.8
1,309,018	+		GFF1279	0.72	+0.9
1,309,018	-		GFF1279	0.72	-1.6
1,309,018	-		GFF1279	0.72	-0.1
1,309,029	+		GFF1279	0.73	-0.8
1,309,034	+		GFF1279	0.73	-0.7
1,309,042	-		GFF1279	0.74	-0.8
1,309,042	-		GFF1279	0.74	+0.1
1,309,042	-		GFF1279	0.74	-2.0
1,309,047	+		GFF1279	0.75	+0.4
1,309,081	-		GFF1279	0.77	-0.2
1,309,092	+		GFF1279	0.78	+0.3
1,309,092	+		GFF1279	0.78	-0.7
1,309,100	-		GFF1279	0.79	+0.5
1,309,110	+		GFF1279	0.80	-0.6
1,309,110	+		GFF1279	0.80	-0.8
1,309,118	-		GFF1279	0.81	-2.3
1,309,125	+		GFF1279	0.81	-2.5
1,309,128	-		GFF1279	0.82	+0.3
1,309,154	+		GFF1279	0.84	-0.6
1,309,175	+		GFF1279	0.86	-1.7
1,309,182	-		GFF1279	0.86	+0.2
1,309,221	-		GFF1279	0.89	-0.4
1,309,233	+				-1.0
1,309,248	-				-1.1
1,309,294	+				+0.8
1,309,294	+				+0.5
1,309,294	+				+0.0
1,309,294	+				-0.8
1,309,294	+				+0.8
1,309,294	+				-1.3
1,309,294	+				+0.6
1,309,294	+				-2.1
1,309,294	+				+0.0
1,309,294	+				-0.8
1,309,302	-				-2.1
1,309,302	-				-0.7
1,309,302	-				+0.4
1,309,302	-				-1.1
1,309,302	-				-1.0
1,309,302	-				+0.5
1,309,302	-				-0.4
1,309,302	-				-0.1
1,309,324	-				-1.1
1,309,354	+				-0.6
1,309,354	+				-1.5
1,309,354	+				+0.3
1,309,362	-				+0.6
1,309,362	-				+0.0
1,309,362	-				+0.2
1,309,362	-				-0.5
1,309,367	-				+0.1
1,309,372	+				-0.3
1,309,372	+				+1.0
1,309,380	-				+0.6
1,309,380	-				-0.7
1,309,380	-				-1.5
1,309,387	+				-0.8
1,309,412	-		GFF1280	0.15	-0.9
1,309,416	-		GFF1280	0.16	-1.2
1,309,444	+		GFF1280	0.22	-1.2
1,309,456	+		GFF1280	0.25	-0.6
1,309,463	+		GFF1280	0.26	-0.1
1,309,463	+		GFF1280	0.26	-0.2
1,309,463	+		GFF1280	0.26	-1.4
1,309,468	+		GFF1280	0.27	-0.4
1,309,471	-		GFF1280	0.28	-2.7
1,309,471	-		GFF1280	0.28	+0.4
1,309,471	-		GFF1280	0.28	-1.8
1,309,471	-		GFF1280	0.28	-0.4
1,309,471	-		GFF1280	0.28	-0.2
1,309,476	-		GFF1280	0.29	-1.4
1,309,520	-		GFF1280	0.39	+0.4
1,309,520	-		GFF1280	0.39	-0.2
1,309,530	+		GFF1280	0.41	-2.2
1,309,541	+		GFF1280	0.43	-1.4
1,309,549	-		GFF1280	0.45	+0.1
1,309,549	-		GFF1280	0.45	-2.1
1,309,553	+		GFF1280	0.46	+0.4
1,309,554	-		GFF1280	0.46	-0.4
1,309,560	-		GFF1280	0.47	+0.5
1,309,574	+		GFF1280	0.50	+0.5
1,309,588	+		GFF1280	0.54	-1.1
1,309,588	+		GFF1280	0.54	-0.3
1,309,588	+		GFF1280	0.54	-2.1
1,309,588	-		GFF1280	0.54	-0.5
1,309,598	-		GFF1280	0.56	+0.3
1,309,637	-		GFF1280	0.64	-0.1
1,309,639	+		GFF1280	0.65	-0.9
1,309,640	+		GFF1280	0.65	+0.2
1,309,694	+		GFF1280	0.77	-0.7
1,309,714	+		GFF1280	0.81	+0.4
1,309,715	-		GFF1280	0.81	-1.1
1,309,745	-		GFF1280	0.88	+1.1
1,309,745	-		GFF1280	0.88	-1.8
1,309,746	+		GFF1280	0.88	-1.6
1,309,747	-		GFF1280	0.88	-0.4
1,309,763	+				+0.2
1,309,773	+				+0.8
1,309,786	+				-1.9
1,309,794	-				-0.3
1,309,802	-				+0.0
1,309,802	-				-1.1
1,309,802	-				+1.3
1,309,804	+				-1.5
1,309,812	-				-1.1
1,309,850	-				-0.9
1,309,873	+				-0.5
1,309,875	+				+0.2
1,309,879	+				-1.0
1,309,881	-				+0.7
1,309,885	+				+0.2
1,309,891	+				-1.7
1,309,894	-				+0.4
1,309,937	-				-0.2
1,309,942	-				+0.6
1,309,942	-				-0.5
1,309,949	-				+1.1
1,309,951	+				+1.0
1,309,951	+				-0.4
1,309,956	+				-2.0
1,309,958	-				-0.3
1,309,959	-				-0.7
1,309,963	-				+1.6
1,309,968	+				-1.8
1,309,973	+				+0.0
1,309,981	-				+1.8
1,309,984	+				+0.1
1,309,984	+				+0.5
1,309,984	+				-0.1
1,309,987	+				-0.3
1,309,992	-				+0.9
1,309,992	-				+0.5
1,309,992	-				-0.6
1,309,997	-		GFF1281	0.10	-1.4
1,309,999	+		GFF1281	0.10	+0.9
1,309,999	+		GFF1281	0.10	+0.8
1,310,006	-		GFF1281	0.11	-0.3
1,310,026	+		GFF1281	0.13	-0.8
1,310,039	-		GFF1281	0.14	+0.4
1,310,041	+		GFF1281	0.14	+0.1
1,310,041	+		GFF1281	0.14	-0.3
1,310,049	-		GFF1281	0.15	-0.3
1,310,049	-		GFF1281	0.15	-0.5
1,310,049	-		GFF1281	0.15	-1.0
1,310,049	-		GFF1281	0.15	+0.4
1,310,049	-		GFF1281	0.15	-0.8
1,310,067	+		GFF1281	0.17	-0.4
1,310,067	+		GFF1281	0.17	-2.7
1,310,067	+		GFF1281	0.17	-0.7
1,310,067	+		GFF1281	0.17	-0.3
1,310,067	+		GFF1281	0.17	-2.0
1,310,067	+		GFF1281	0.17	+1.4
1,310,067	+		GFF1281	0.17	+1.9
1,310,067	+		GFF1281	0.17	-1.4
1,310,067	+		GFF1281	0.17	-0.3
1,310,067	+		GFF1281	0.17	+0.2
1,310,067	+		GFF1281	0.17	+0.0
1,310,067	+		GFF1281	0.17	-0.6
1,310,075	-		GFF1281	0.18	-0.1
1,310,075	-		GFF1281	0.18	+1.5
1,310,075	-		GFF1281	0.18	-0.3
1,310,075	-		GFF1281	0.18	+0.3
1,310,075	-		GFF1281	0.18	-0.3
1,310,075	-		GFF1281	0.18	+0.6
1,310,107	+		GFF1281	0.21	-0.1
1,310,107	+		GFF1281	0.21	-0.7
1,310,107	+		GFF1281	0.21	+0.9
1,310,107	+		GFF1281	0.21	-0.6
1,310,107	+		GFF1281	0.21	-0.2
1,310,107	+		GFF1281	0.21	-0.9
1,310,107	+		GFF1281	0.21	-0.5
1,310,107	+		GFF1281	0.21	-0.6
1,310,107	+		GFF1281	0.21	-0.3
1,310,107	+		GFF1281	0.21	+1.1
1,310,107	+		GFF1281	0.21	+1.2
1,310,107	+		GFF1281	0.21	+0.6
1,310,107	+		GFF1281	0.21	-1.5
1,310,107	+		GFF1281	0.21	+0.9
1,310,114	+		GFF1281	0.22	-0.4
1,310,115	-		GFF1281	0.22	-2.1
1,310,115	-		GFF1281	0.22	-0.5
1,310,115	-		GFF1281	0.22	-0.1
1,310,115	-		GFF1281	0.22	+0.9
1,310,115	-		GFF1281	0.22	+0.4
1,310,115	-		GFF1281	0.22	-0.5
1,310,115	-		GFF1281	0.22	+0.3
1,310,115	-		GFF1281	0.22	-2.2
1,310,133	+		GFF1281	0.24	+1.2
1,310,139	+		GFF1281	0.24	-1.4
1,310,139	+		GFF1281	0.24	+1.4
1,310,139	+		GFF1281	0.24	+0.2
1,310,139	+		GFF1281	0.24	-0.7
1,310,139	+		GFF1281	0.24	+1.1
1,310,139	+		GFF1281	0.24	-0.8
1,310,139	-		GFF1281	0.24	-1.1
1,310,147	-		GFF1281	0.25	+0.2
1,310,147	-		GFF1281	0.25	+0.3
1,310,147	-		GFF1281	0.25	-0.5
1,310,166	-		GFF1281	0.27	-0.8
1,310,171	-		GFF1281	0.28	+0.0
1,310,198	-		GFF1281	0.30	+0.4
1,310,202	+		GFF1281	0.31	-1.7
1,310,234	+		GFF1281	0.34	+0.0
1,310,237	-		GFF1281	0.34	+0.9
1,310,287	-		GFF1281	0.39	+1.1
1,310,297	+		GFF1281	0.40	+0.7
1,310,305	-		GFF1281	0.41	-0.7
1,310,305	-		GFF1281	0.41	-1.1
1,310,305	-		GFF1281	0.41	-0.5
1,310,305	-		GFF1281	0.41	-0.3
1,310,305	-		GFF1281	0.41	-0.7
1,310,312	+		GFF1281	0.42	-1.6
1,310,312	+		GFF1281	0.42	-0.5
1,310,313	+		GFF1281	0.42	-0.4
1,310,320	-		GFF1281	0.43	+0.2
1,310,320	-		GFF1281	0.43	+0.3
1,310,320	-		GFF1281	0.43	+1.1
1,310,321	-		GFF1281	0.43	+0.8
1,310,345	+		GFF1281	0.45	-0.9
1,310,345	+		GFF1281	0.45	-0.5
1,310,353	-		GFF1281	0.46	-1.3
1,310,381	+		GFF1281	0.49	+0.6
1,310,381	+		GFF1281	0.49	-0.5
1,310,384	-		GFF1281	0.49	-1.2
1,310,398	-		GFF1281	0.51	-0.4
1,310,445	+		GFF1281	0.55	+0.7
1,310,445	+		GFF1281	0.55	+0.0
1,310,445	+		GFF1281	0.55	-1.7
1,310,445	+		GFF1281	0.55	+0.1
1,310,446	-		GFF1281	0.56	-0.6
1,310,453	-		GFF1281	0.56	+0.1
1,310,453	-		GFF1281	0.56	-0.8
1,310,453	-		GFF1281	0.56	-0.0
1,310,453	-		GFF1281	0.56	+0.2
1,310,453	-		GFF1281	0.56	+0.6
1,310,453	-		GFF1281	0.56	-1.0
1,310,475	-		GFF1281	0.58	+0.2
1,310,475	-		GFF1281	0.58	-0.3
1,310,477	+		GFF1281	0.59	+0.9
1,310,485	-		GFF1281	0.59	+0.5
1,310,485	-		GFF1281	0.59	-0.3
1,310,521	+		GFF1281	0.63	-2.5
1,310,539	+		GFF1281	0.65	+0.6
1,310,539	+		GFF1281	0.65	-0.3
1,310,539	+		GFF1281	0.65	+0.0
1,310,539	+		GFF1281	0.65	-0.8
1,310,539	+		GFF1281	0.65	+0.7
1,310,539	+		GFF1281	0.65	+0.5
1,310,544	+		GFF1281	0.65	+0.2
1,310,547	-		GFF1281	0.66	-0.3
1,310,547	-		GFF1281	0.66	-0.1
1,310,547	-		GFF1281	0.66	+1.4
1,310,548	-		GFF1281	0.66	-0.2
1,310,552	-		GFF1281	0.66	-0.2
1,310,561	-		GFF1281	0.67	-2.1
1,310,566	-		GFF1281	0.68	-0.3
1,310,567	-		GFF1281	0.68	-1.2
1,310,573	-		GFF1281	0.68	+1.0
1,310,582	+		GFF1281	0.69	+0.7
1,310,582	+		GFF1281	0.69	+0.3
1,310,582	+		GFF1281	0.69	+2.2
1,310,614	+		GFF1281	0.73	-0.7
1,310,616	-		GFF1281	0.73	+0.2
1,310,616	-		GFF1281	0.73	+0.3
1,310,653	+		GFF1281	0.76	+0.2
1,310,685	-		GFF1281	0.80	-1.8
1,310,710	+		GFF1281	0.82	+0.5
1,310,711	+		GFF1281	0.82	-0.8
1,310,712	+		GFF1281	0.82	-0.4
1,310,712	+		GFF1281	0.82	+0.5
1,310,712	+		GFF1281	0.82	-1.8
1,310,717	-		GFF1281	0.83	-1.5
1,310,719	+		GFF1281	0.83	+0.1
1,310,720	-		GFF1281	0.83	-0.4
1,310,720	-		GFF1281	0.83	-0.9
1,310,720	-		GFF1281	0.83	-0.5
1,310,720	-		GFF1281	0.83	+0.9
1,310,720	-		GFF1281	0.83	+0.5
1,310,720	-		GFF1281	0.83	-0.4
1,310,720	-		GFF1281	0.83	-1.2
1,310,727	-		GFF1281	0.84	+1.1
1,310,735	-		GFF1281	0.85	-1.9
1,310,737	+		GFF1281	0.85	+0.5
1,310,745	-		GFF1281	0.86	+0.2
1,310,745	-		GFF1281	0.86	+0.2
1,310,758	-		GFF1281	0.87	+0.4
1,310,758	-		GFF1281	0.87	+0.1
1,310,758	-		GFF1281	0.87	-0.6
1,310,758	-		GFF1281	0.87	+0.6
1,310,758	-		GFF1281	0.87	+0.4
1,310,760	-		GFF1281	0.87	-0.4
1,310,768	-		GFF1281	0.88	-1.5
1,310,769	+		GFF1281	0.88	+0.7
1,310,773	-		GFF1281	0.89	-0.3
1,310,777	-		GFF1281	0.89	+0.5
1,310,777	-		GFF1281	0.89	+1.0
1,310,778	+		GFF1281	0.89	+0.6
1,310,794	+				+0.0
1,310,813	+				+0.3
1,310,821	-				-1.0
1,310,826	-				-1.1
1,310,826	-				-0.5
1,310,828	+				-0.9
1,310,828	+				+1.0
1,310,828	+				+0.1
1,310,828	+				-0.5
1,310,828	+				-0.2
1,310,828	+				+1.2
1,310,828	+				-1.3
1,310,830	-				+0.3
1,310,831	-				+0.2
1,310,836	-				-0.0
1,310,836	-				-0.7
1,310,836	-				+1.1
1,310,848	-				-0.8
1,310,856	-				-1.6
1,310,856	-				+1.2
1,310,856	-				-0.8
1,310,922	-				+0.4
1,310,924	-				-1.7
1,310,939	+				-1.0
1,310,976	-				+0.3
1,310,991	+				-0.9
1,310,996	+				+1.4
1,310,996	+				+0.7
1,311,007	+				-0.9
1,311,007	+				+0.4
1,311,007	+				+0.6
1,311,015	-				-0.3
1,311,025	-				-2.2
1,311,064	+				-0.4
1,311,064	+				-0.3
1,311,064	+				-0.2
1,311,072	-				-1.1
1,311,072	-				-1.1
1,311,072	-				-0.2
1,311,072	-				+0.5
1,311,072	-				+0.8
1,311,073	+				+0.4
1,311,081	-		GFF1282	0.11	-1.7
1,311,088	+		GFF1282	0.12	-0.8
1,311,096	-		GFF1282	0.12	+0.6
1,311,098	-		GFF1282	0.13	-2.8
1,311,103	-		GFF1282	0.13	-1.3
1,311,157	+		GFF1282	0.19	-0.8
1,311,157	+		GFF1282	0.19	-0.6
1,311,182	-		GFF1282	0.22	-0.6
1,311,194	-		GFF1282	0.23	+0.2
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1,311,883	-				+2.0
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