Strain Fitness in Sphingobium sp. HT1-2 around GFF1213

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,233,331	-		GFF1212	0.34	-1.7
1,233,341	-		GFF1212	0.35	+0.4
1,233,347	+		GFF1212	0.35	-0.3
1,233,347	-		GFF1212	0.35	-0.7
1,233,347	-		GFF1212	0.35	-1.2
1,233,349	+		GFF1212	0.36	+0.2
1,233,355	+		GFF1212	0.36	-0.4
1,233,355	+		GFF1212	0.36	-1.1
1,233,355	+		GFF1212	0.36	+0.3
1,233,366	+		GFF1212	0.37	+0.6
1,233,372	+		GFF1212	0.37	+0.2
1,233,380	-		GFF1212	0.38	-1.6
1,233,380	-		GFF1212	0.38	-1.9
1,233,380	-		GFF1212	0.38	+0.4
1,233,380	-		GFF1212	0.38	-0.2
1,233,382	+		GFF1212	0.38	-1.3
1,233,382	+		GFF1212	0.38	-1.3
1,233,382	+		GFF1212	0.38	-0.3
1,233,382	+		GFF1212	0.38	-1.2
1,233,382	+		GFF1212	0.38	-0.5
1,233,382	+		GFF1212	0.38	-0.4
1,233,382	+		GFF1212	0.38	+0.4
1,233,390	-		GFF1212	0.38	+0.4
1,233,390	-		GFF1212	0.38	-1.8
1,233,390	-		GFF1212	0.38	+0.6
1,233,390	-		GFF1212	0.38	-0.3
1,233,390	-		GFF1212	0.38	-2.1
1,233,408	+		GFF1212	0.39	-1.3
1,233,418	+		GFF1212	0.40	+0.7
1,233,443	-		GFF1212	0.42	+0.4
1,233,445	+		GFF1212	0.42	+1.1
1,233,449	-		GFF1212	0.42	-0.5
1,233,453	-		GFF1212	0.42	-2.1
1,233,453	-		GFF1212	0.42	+0.9
1,233,460	+		GFF1212	0.43	+0.1
1,233,460	+		GFF1212	0.43	+1.4
1,233,460	+		GFF1212	0.43	+0.7
1,233,460	+		GFF1212	0.43	-0.8
1,233,468	-		GFF1212	0.43	+1.8
1,233,468	-		GFF1212	0.43	+0.4
1,233,468	-		GFF1212	0.43	-1.9
1,233,488	+		GFF1212	0.45	-1.3
1,233,494	+		GFF1212	0.45	-0.3
1,233,496	-		GFF1212	0.45	+0.3
1,233,502	-		GFF1212	0.46	-0.5
1,233,506	-		GFF1212	0.46	-0.1
1,233,506	-		GFF1212	0.46	+0.3
1,233,507	+		GFF1212	0.46	-0.8
1,233,507	+		GFF1212	0.46	+0.5
1,233,520	+		GFF1212	0.47	+0.6
1,233,520	+		GFF1212	0.47	+0.6
1,233,522	+		GFF1212	0.47	+1.2
1,233,522	+		GFF1212	0.47	+0.2
1,233,528	-		GFF1212	0.47	-0.4
1,233,528	-		GFF1212	0.47	+0.4
1,233,530	+		GFF1212	0.47	+0.9
1,233,530	+		GFF1212	0.47	-0.4
1,233,530	-		GFF1212	0.47	-1.6
1,233,538	-		GFF1212	0.48	+1.1
1,233,538	-		GFF1212	0.48	-0.5
1,233,548	-		GFF1212	0.49	+0.7
1,233,548	-		GFF1212	0.49	-0.3
1,233,550	+		GFF1212	0.49	-1.6
1,233,558	-		GFF1212	0.49	-1.8
1,233,558	-		GFF1212	0.49	-1.3
1,233,576	+		GFF1212	0.50	-1.7
1,233,584	-		GFF1212	0.51	-0.8
1,233,584	-		GFF1212	0.51	+0.3
1,233,610	+		GFF1212	0.53	-0.8
1,233,610	+		GFF1212	0.53	-0.1
1,233,617	+		GFF1212	0.53	+0.5
1,233,639	+		GFF1212	0.55	+0.6
1,233,664	+		GFF1212	0.56	+0.8
1,233,672	-		GFF1212	0.57	-1.0
1,233,672	-		GFF1212	0.57	-0.0
1,233,680	-		GFF1212	0.57	-0.1
1,233,729	-		GFF1212	0.60	-0.8
1,233,751	-		GFF1212	0.62	-2.0
1,233,815	+		GFF1212	0.66	+0.2
1,233,815	+		GFF1212	0.66	+1.5
1,233,823	-		GFF1212	0.67	-1.3
1,233,885	+		GFF1212	0.71	+0.2
1,233,885	+		GFF1212	0.71	-1.4
1,233,893	-		GFF1212	0.71	+0.3
1,233,908	-		GFF1212	0.72	-0.4
1,233,942	-		GFF1212	0.74	+0.4
1,233,958	+		GFF1212	0.75	+0.1
1,233,966	-		GFF1212	0.76	-0.0
1,233,966	-		GFF1212	0.76	+1.2
1,234,011	+		GFF1212	0.79	-0.9
1,234,019	-		GFF1212	0.79	-0.2
1,234,022	+		GFF1212	0.80	-0.9
1,234,046	+		GFF1212	0.81	+2.0
1,234,046	+		GFF1212	0.81	+0.8
1,234,054	+		GFF1212	0.82	+1.2
1,234,054	-		GFF1212	0.82	+0.7
1,234,054	-		GFF1212	0.82	-1.5
1,234,054	-		GFF1212	0.82	+0.5
1,234,060	-		GFF1212	0.82	+0.7
1,234,062	-		GFF1212	0.82	-0.1
1,234,078	-		GFF1212	0.83	-0.8
1,234,084	+		GFF1212	0.84	+0.8
1,234,129	+		GFF1212	0.87	+0.9
1,234,139	+		GFF1212	0.87	-0.6
1,234,144	+		GFF1212	0.88	-1.5
1,234,144	-		GFF1212	0.88	-1.2
1,234,152	-		GFF1212	0.88	-0.0
1,234,171	-		GFF1212	0.89	-1.2
1,234,171	-		GFF1212	0.89	-0.3
1,234,181	+				-0.8
1,234,182	+				-1.4
1,234,183	+				-0.6
1,234,193	+				-1.4
1,234,193	+				-0.6
1,234,197	+				-0.5
1,234,201	-				+0.2
1,234,215	-				-1.2
1,234,225	-				-1.1
1,234,225	-				-0.1
1,234,225	-				-0.2
1,234,228	-				+0.6
1,234,294	+				-1.7
1,234,298	-				-2.5
1,234,302	-				-0.4
1,234,302	-				+0.6
1,234,307	+				-0.7
1,234,307	+				+0.8
1,234,315	-				-0.8
1,234,315	-				+0.8
1,234,315	-				+0.7
1,234,315	-				-0.5
1,234,324	+				-1.6
1,234,330	+				-0.7
1,234,356	+				-0.9
1,234,356	+				+0.2
1,234,366	+				-1.6
1,234,379	+				-0.2
1,234,389	+				-0.0
1,234,394	+				+0.7
1,234,431	+		GFF1213	0.12	-0.4
1,234,432	+		GFF1213	0.13	+0.1
1,234,439	-		GFF1213	0.13	-1.4
1,234,461	-		GFF1213	0.16	-1.1
1,234,468	+		GFF1213	0.17	-0.1
1,234,473	+		GFF1213	0.18	-0.3
1,234,473	+		GFF1213	0.18	+0.1
1,234,473	+		GFF1213	0.18	-1.4
1,234,473	+		GFF1213	0.18	-0.0
1,234,473	+		GFF1213	0.18	+1.1
1,234,473	+		GFF1213	0.18	-0.3
1,234,476	-		GFF1213	0.18	-1.1
1,234,476	-		GFF1213	0.18	-0.7
1,234,481	-		GFF1213	0.19	-0.2
1,234,481	-		GFF1213	0.19	+1.3
1,234,481	-		GFF1213	0.19	-0.8
1,234,481	-		GFF1213	0.19	-1.9
1,234,481	-		GFF1213	0.19	-0.7
1,234,481	-		GFF1213	0.19	-0.3
1,234,481	-		GFF1213	0.19	-0.3
1,234,481	-		GFF1213	0.19	+0.6
1,234,482	-		GFF1213	0.19	+0.9
1,234,487	+		GFF1213	0.19	+0.8
1,234,487	+		GFF1213	0.19	-1.4
1,234,495	-		GFF1213	0.20	-2.5
1,234,532	+		GFF1213	0.25	+0.0
1,234,540	-		GFF1213	0.26	-1.3
1,234,557	+		GFF1213	0.28	-0.8
1,234,564	+		GFF1213	0.29	+1.2
1,234,565	-		GFF1213	0.29	-0.4
1,234,572	-		GFF1213	0.30	-0.0
1,234,572	-		GFF1213	0.30	+0.5
1,234,574	+		GFF1213	0.30	-1.1
1,234,574	+		GFF1213	0.30	-0.2
1,234,574	+		GFF1213	0.30	-1.3
1,234,574	+		GFF1213	0.30	-0.0
1,234,574	+		GFF1213	0.30	-1.4
1,234,574	+		GFF1213	0.30	-0.6
1,234,582	-		GFF1213	0.31	-1.1
1,234,582	-		GFF1213	0.31	-0.3
1,234,582	-		GFF1213	0.31	-0.7
1,234,584	+		GFF1213	0.31	-0.7
1,234,584	+		GFF1213	0.31	-0.8
1,234,589	+		GFF1213	0.32	+1.0
1,234,592	-		GFF1213	0.32	-0.0
1,234,592	-		GFF1213	0.32	+0.8
1,234,592	-		GFF1213	0.32	-1.9
1,234,592	-		GFF1213	0.32	-0.1
1,234,592	-		GFF1213	0.32	-1.8
1,234,612	+		GFF1213	0.35	+0.2
1,234,622	-		GFF1213	0.36	-0.4
1,234,622	-		GFF1213	0.36	-1.2
1,234,624	+		GFF1213	0.36	+0.6
1,234,629	+		GFF1213	0.37	-0.7
1,234,637	-		GFF1213	0.38	-0.4
1,234,637	-		GFF1213	0.38	-0.4
1,234,646	+		GFF1213	0.39	-0.4
1,234,686	+		GFF1213	0.44	-1.0
1,234,686	+		GFF1213	0.44	-1.4
1,234,693	-		GFF1213	0.45	-0.3
1,234,695	+		GFF1213	0.45	-0.2
1,234,705	+		GFF1213	0.46	-1.2
1,234,713	+		GFF1213	0.47	-0.6
1,234,727	-		GFF1213	0.49	-2.6
1,234,736	+		GFF1213	0.50	-2.6
1,234,750	+		GFF1213	0.52	+0.3
1,234,764	-		GFF1213	0.53	+0.2
1,234,776	-		GFF1213	0.55	+0.0
1,234,781	+		GFF1213	0.55	-0.4
1,234,781	+		GFF1213	0.55	-0.1
1,234,781	+		GFF1213	0.55	+0.7
1,234,781	+		GFF1213	0.55	-0.2
1,234,781	+		GFF1213	0.55	-1.4
1,234,789	-		GFF1213	0.56	-0.5
1,234,794	-		GFF1213	0.57	+0.2
1,234,800	-		GFF1213	0.58	+0.4
1,234,810	+		GFF1213	0.59	+0.2
1,234,826	-		GFF1213	0.61	+0.3
1,234,826	-		GFF1213	0.61	+0.1
1,234,853	+		GFF1213	0.64	-0.4
1,234,861	-		GFF1213	0.65	+0.2
1,234,881	+		GFF1213	0.68	+0.6
1,234,902	+		GFF1213	0.70	-1.9
1,234,910	-		GFF1213	0.71	-1.5
1,234,949	+		GFF1213	0.76	-0.0
1,234,957	-		GFF1213	0.77	-0.9
1,234,958	+		GFF1213	0.77	-0.2
1,234,958	+		GFF1213	0.77	+0.3
1,234,958	+		GFF1213	0.77	-0.9
1,234,960	+		GFF1213	0.77	+0.6
1,234,966	-		GFF1213	0.78	-0.1
1,234,968	+		GFF1213	0.78	-2.3
1,235,039	-		GFF1213	0.87	-1.0
1,235,039	-		GFF1213	0.87	-0.1
1,235,060	+		GFF1213	0.90	+0.3
1,235,060	+		GFF1213	0.90	+0.1
1,235,060	+		GFF1213	0.90	-0.1
1,235,082	-				-0.7
1,235,084	+				-1.3
1,235,084	+				-0.9
1,235,084	+				+0.4
1,235,084	+				-1.4
1,235,091	-				+0.7
1,235,092	-				-0.3
1,235,092	-				+0.3
1,235,092	-				+0.2
1,235,101	+				-0.8
1,235,109	+				-1.8
1,235,111	-				+0.5
1,235,117	-				+0.2
1,235,117	-				-1.5
1,235,117	-				+0.8
1,235,137	+				+0.9
1,235,145	-				-1.4
1,235,145	-				+0.7
1,235,147	+				+0.6
1,235,154	-				+0.6
1,235,175	+				-0.9
1,235,242	+				-1.2
1,235,247	+				-0.5
1,235,364	+		GFF1214	0.13	-0.4
1,235,364	+		GFF1214	0.13	-0.5
1,235,383	+		GFF1214	0.14	-0.3
1,235,403	+		GFF1214	0.15	-0.5
1,235,415	+		GFF1214	0.16	-1.0
1,235,415	+		GFF1214	0.16	-1.1
1,235,415	+		GFF1214	0.16	-1.7
1,235,415	+		GFF1214	0.16	-1.2
1,235,423	-		GFF1214	0.16	-0.6
1,235,423	-		GFF1214	0.16	-1.7
1,235,423	-		GFF1214	0.16	-0.2
1,235,423	-		GFF1214	0.16	-1.0
1,235,437	-		GFF1214	0.17	+0.9
1,235,456	+		GFF1214	0.18	+0.3
1,235,457	+		GFF1214	0.18	+0.4
1,235,457	+		GFF1214	0.18	+0.7
1,235,477	+		GFF1214	0.20	-0.1
1,235,480	-		GFF1214	0.20	-0.0
1,235,482	+		GFF1214	0.20	+0.4
1,235,482	+		GFF1214	0.20	+0.1
1,235,485	-		GFF1214	0.20	-0.6
1,235,538	-		GFF1214	0.23	+1.0
1,235,539	+		GFF1214	0.23	+2.1
1,235,542	-		GFF1214	0.24	-0.4
1,235,578	+		GFF1214	0.26	-1.0
1,235,583	+		GFF1214	0.26	+0.6
1,235,586	-		GFF1214	0.26	-0.9
1,235,588	+		GFF1214	0.26	-0.6
1,235,588	+		GFF1214	0.26	-1.5
1,235,588	+		GFF1214	0.26	-0.3
1,235,588	+		GFF1214	0.26	-0.8
1,235,590	+		GFF1214	0.26	-0.0
1,235,591	-		GFF1214	0.26	-1.4
1,235,593	-		GFF1214	0.27	-0.6
1,235,596	-		GFF1214	0.27	-1.8
1,235,596	-		GFF1214	0.27	+0.3
1,235,596	-		GFF1214	0.27	-0.2
1,235,596	-		GFF1214	0.27	+0.9
1,235,596	-		GFF1214	0.27	-0.1
1,235,681	+		GFF1214	0.32	+0.0
1,235,704	-		GFF1214	0.33	-1.9
1,235,736	-		GFF1214	0.35	-0.4
1,235,787	-		GFF1214	0.38	-1.2
1,235,821	+		GFF1214	0.40	+1.0
1,235,826	+		GFF1214	0.41	-1.2
1,235,826	+		GFF1214	0.41	-0.6
1,235,834	-		GFF1214	0.41	-0.1
1,235,883	-		GFF1214	0.44	+0.2
1,235,914	-		GFF1214	0.46	-0.1
1,235,920	-		GFF1214	0.46	+0.9
1,235,920	-		GFF1214	0.46	+0.5
1,235,929	+		GFF1214	0.47	+0.2
1,235,929	+		GFF1214	0.47	-1.3
1,235,929	+		GFF1214	0.47	-0.2
1,235,937	-		GFF1214	0.47	-1.5
1,235,937	-		GFF1214	0.47	-0.9
1,235,937	-		GFF1214	0.47	+1.2
1,235,942	-		GFF1214	0.48	+0.3
1,235,950	-		GFF1214	0.48	-0.7
1,235,950	-		GFF1214	0.48	+0.7
1,235,950	-		GFF1214	0.48	+0.4
1,235,952	+		GFF1214	0.48	+0.3
1,236,027	+		GFF1214	0.53	-0.4
1,236,042	+		GFF1214	0.54	+0.8
1,236,045	-		GFF1214	0.54	-0.5
1,236,047	+		GFF1214	0.54	+0.0
1,236,051	+		GFF1214	0.54	+0.1
1,236,138	+		GFF1214	0.59	+1.2