Strain Fitness in Sphingobium sp. HT1-2 around GFF1189

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,197,389	-		GFF1188	0.68	-2.6
1,197,404	+		GFF1188	0.68	+0.6
1,197,417	-		GFF1188	0.69	+0.7
1,197,419	+		GFF1188	0.69	-0.4
1,197,427	-		GFF1188	0.69	-1.9
1,197,427	-		GFF1188	0.69	+0.3
1,197,431	-		GFF1188	0.69	+0.2
1,197,449	+		GFF1188	0.70	-0.9
1,197,453	-		GFF1188	0.70	+0.2
1,197,465	+		GFF1188	0.70	+1.2
1,197,473	-		GFF1188	0.71	-0.0
1,197,474	-		GFF1188	0.71	-1.2
1,197,492	-		GFF1188	0.71	+0.7
1,197,498	+		GFF1188	0.72	-0.2
1,197,499	+		GFF1188	0.72	-1.0
1,197,522	-		GFF1188	0.72	+0.7
1,197,565	-		GFF1188	0.74	+1.3
1,197,574	+		GFF1188	0.74	+1.8
1,197,575	+		GFF1188	0.74	-0.2
1,197,582	-		GFF1188	0.74	+0.8
1,197,582	-		GFF1188	0.74	-0.8
1,197,623	+		GFF1188	0.76	+0.3
1,197,628	+		GFF1188	0.76	-0.0
1,197,631	-		GFF1188	0.76	+0.9
1,197,633	-		GFF1188	0.76	-0.9
1,197,642	+		GFF1188	0.76	+0.1
1,197,647	+		GFF1188	0.77	+0.5
1,197,648	-		GFF1188	0.77	-2.2
1,197,655	-		GFF1188	0.77	-0.2
1,197,658	+		GFF1188	0.77	-2.4
1,197,660	-		GFF1188	0.77	-0.1
1,197,660	-		GFF1188	0.77	+0.2
1,197,684	+		GFF1188	0.78	+0.4
1,197,688	+		GFF1188	0.78	-1.4
1,197,689	+		GFF1188	0.78	-0.0
1,197,694	+		GFF1188	0.78	-0.4
1,197,697	-		GFF1188	0.78	+0.3
1,197,697	-		GFF1188	0.78	-1.5
1,197,697	-		GFF1188	0.78	+0.9
1,197,699	+		GFF1188	0.78	+0.6
1,197,702	-		GFF1188	0.78	-0.6
1,197,702	-		GFF1188	0.78	+0.9
1,197,702	-		GFF1188	0.78	-2.5
1,197,718	+		GFF1188	0.79	+1.5
1,197,740	+		GFF1188	0.80	-0.9
1,197,744	-		GFF1188	0.80	-1.5
1,197,755	+		GFF1188	0.80	-0.2
1,197,758	-		GFF1188	0.80	-0.8
1,197,770	+		GFF1188	0.81	-0.5
1,197,820	+		GFF1188	0.82	-0.2
1,197,836	+		GFF1188	0.83	-0.7
1,197,836	+		GFF1188	0.83	+1.2
1,197,836	+		GFF1188	0.83	+0.6
1,197,844	-		GFF1188	0.83	+0.5
1,197,875	+		GFF1188	0.84	-0.4
1,197,876	-		GFF1188	0.84	+0.7
1,197,919	+		GFF1188	0.86	+0.6
1,197,927	-		GFF1188	0.86	-1.1
1,197,933	-		GFF1188	0.86	-2.0
1,197,962	-		GFF1188	0.87	+0.2
1,197,973	-		GFF1188	0.88	+0.3
1,197,975	+		GFF1188	0.88	-0.7
1,197,984	+		GFF1188	0.88	-0.3
1,198,058	+				-1.5
1,198,066	-				-0.6
1,198,070	-				-0.9
1,198,076	-				-0.3
1,198,111	-				-1.7
1,198,129	+				-0.1
1,198,137	-				-0.8
1,198,137	-				-0.5
1,198,137	-				+1.0
1,198,139	+				-2.3
1,198,139	+				+0.8
1,198,139	+				-2.3
1,198,139	+				+0.3
1,198,139	+				-1.3
1,198,142	-				-0.6
1,198,142	-				-0.5
1,198,147	-				+1.3
1,198,147	-				+0.5
1,198,150	+				-1.5
1,198,151	+				+1.5
1,198,158	+				+1.1
1,198,158	+				-1.5
1,198,158	-				-0.4
1,198,158	-				-0.7
1,198,159	-				+1.1
1,198,208	-				-1.3
1,198,208	-				+0.3
1,198,219	-				-1.1
1,198,221	+				-0.5
1,198,221	+				-2.2
1,198,221	+				-0.7
1,198,221	+				-0.2
1,198,221	+				+1.3
1,198,221	+				-0.1
1,198,229	-				-0.6
1,198,229	-				+0.9
1,198,229	-				-0.6
1,198,229	-				-1.0
1,198,229	-				-0.3
1,198,229	-				-1.0
1,198,272	+				-1.0
1,198,272	+				+0.7
1,198,272	+				-0.4
1,198,272	+				+0.3
1,198,274	+				+1.3
1,198,274	+				-0.6
1,198,274	+				-0.9
1,198,274	+				+0.0
1,198,277	-				+0.5
1,198,279	+				-1.3
1,198,279	+				+1.8
1,198,279	+				-0.3
1,198,279	+				+0.2
1,198,279	+				-1.9
1,198,279	+				-1.3
1,198,279	+				-0.4
1,198,279	+				-1.4
1,198,279	+				+0.5
1,198,279	+				-1.5
1,198,279	+				-0.4
1,198,279	+				-1.5
1,198,280	-				-0.1
1,198,280	-				-0.9
1,198,282	-				-1.2
1,198,287	-				-0.1
1,198,287	-				-0.9
1,198,287	-				-2.1
1,198,287	-				-2.2
1,198,287	-				-0.7
1,198,287	-				-0.1
1,198,287	-				-2.4
1,198,287	-				-0.4
1,198,287	-				-0.9
1,198,287	-				-1.5
1,198,287	-				-0.1
1,198,287	-				+0.5
1,198,287	-				+1.5
1,198,287	-				+0.4
1,198,287	-				-0.8
1,198,287	-				-0.6
1,198,287	-				+0.2
1,198,287	-				+0.3
1,198,292	-				-0.3
1,198,292	-				-0.1
1,198,295	+				+0.7
1,198,295	+				-0.6
1,198,321	+				-1.7
1,198,327	-				-0.8
1,198,339	-				-1.2
1,198,341	+				+0.8
1,198,341	+				-2.1
1,198,349	-				-0.5
1,198,362	+				-0.8
1,198,370	-				+0.6
1,198,379	+				-0.3
1,198,384	+				-2.4
1,198,387	-				-0.0
1,198,400	-				+0.5
1,198,407	+				-0.5
1,198,412	+				-1.9
1,198,412	+				+0.5
1,198,412	+				+0.5
1,198,412	+				+0.3
1,198,417	+				+1.2
1,198,417	+				-1.0
1,198,417	+				-2.4
1,198,420	-				-2.2
1,198,420	-				-0.2
1,198,425	-				+1.6
1,198,425	-				-0.2
1,198,425	-				+0.8
1,198,459	+				-0.4
1,198,460	+				+0.2
1,198,468	+				-1.6
1,198,476	-				+0.1
1,198,480	-				-0.6
1,198,482	-				+0.4
1,198,540	+				-1.9
1,198,540	+				-0.7
1,198,563	-		GFF1189	0.11	-0.1
1,198,570	-		GFF1189	0.12	+0.9
1,198,587	+		GFF1189	0.12	+0.3
1,198,595	-		GFF1189	0.13	-1.1
1,198,595	-		GFF1189	0.13	-0.2
1,198,622	-		GFF1189	0.14	-1.5
1,198,627	+		GFF1189	0.15	-1.1
1,198,635	-		GFF1189	0.15	-1.3
1,198,635	-		GFF1189	0.15	-1.2
1,198,641	+		GFF1189	0.15	+0.3
1,198,643	-		GFF1189	0.15	-0.7
1,198,646	+		GFF1189	0.16	-0.5
1,198,653	+		GFF1189	0.16	-0.4
1,198,675	+		GFF1189	0.17	-0.2
1,198,704	+		GFF1189	0.19	+0.1
1,198,707	-		GFF1189	0.19	-1.2
1,198,709	+		GFF1189	0.19	-1.9
1,198,709	+		GFF1189	0.19	-1.4
1,198,709	+		GFF1189	0.19	-0.3
1,198,709	+		GFF1189	0.19	-2.0
1,198,712	-		GFF1189	0.19	+1.3
1,198,714	+		GFF1189	0.19	-0.4
1,198,717	-		GFF1189	0.19	+1.5
1,198,719	+		GFF1189	0.19	-0.3
1,198,719	+		GFF1189	0.19	+0.5
1,198,722	-		GFF1189	0.20	-0.5
1,198,727	-		GFF1189	0.20	-0.9
1,198,727	-		GFF1189	0.20	-0.6
1,198,727	-		GFF1189	0.20	-0.7
1,198,779	-		GFF1189	0.23	+0.3
1,198,785	-		GFF1189	0.23	-1.8
1,198,785	-		GFF1189	0.23	-0.8
1,198,803	+		GFF1189	0.24	+0.6
1,198,813	+		GFF1189	0.24	+1.4
1,198,817	-		GFF1189	0.25	+0.8
1,198,839	-		GFF1189	0.26	-0.4
1,198,843	-		GFF1189	0.26	-0.0
1,198,864	+		GFF1189	0.27	-2.2
1,198,873	-		GFF1189	0.28	-0.1
1,198,875	+		GFF1189	0.28	-0.6
1,198,878	-		GFF1189	0.28	-1.8
1,198,878	-		GFF1189	0.28	-0.1
1,198,878	-		GFF1189	0.28	+0.0
1,198,904	-		GFF1189	0.29	-2.0
1,198,957	-		GFF1189	0.32	+0.4
1,198,989	+		GFF1189	0.34	-1.5
1,198,996	+		GFF1189	0.34	-0.0
1,198,996	-		GFF1189	0.34	-0.5
1,199,008	-		GFF1189	0.35	-1.2
1,199,008	-		GFF1189	0.35	+0.9
1,199,008	-		GFF1189	0.35	+0.4
1,199,010	+		GFF1189	0.35	+0.7
1,199,015	+		GFF1189	0.35	-2.0
1,199,018	-		GFF1189	0.35	-0.9
1,199,019	+		GFF1189	0.35	-1.3
1,199,033	+		GFF1189	0.36	+0.9
1,199,040	-		GFF1189	0.36	-0.2
1,199,043	-		GFF1189	0.37	-1.3
1,199,059	+		GFF1189	0.37	+0.1
1,199,076	+		GFF1189	0.38	-1.3
1,199,076	+		GFF1189	0.38	-0.5
1,199,085	+		GFF1189	0.39	+0.8
1,199,103	+		GFF1189	0.40	-0.5
1,199,128	+		GFF1189	0.41	+0.8
1,199,149	+		GFF1189	0.42	-0.7
1,199,149	+		GFF1189	0.42	-0.0
1,199,180	+		GFF1189	0.44	-2.8
1,199,189	-		GFF1189	0.44	-0.5
1,199,189	-		GFF1189	0.44	+1.1
1,199,201	+		GFF1189	0.45	+0.2
1,199,209	-		GFF1189	0.45	-1.2
1,199,213	-		GFF1189	0.46	-0.6
1,199,240	+		GFF1189	0.47	-1.2
1,199,260	-		GFF1189	0.48	-0.0
1,199,271	+		GFF1189	0.49	-1.7
1,199,271	-		GFF1189	0.49	-0.1
1,199,277	-		GFF1189	0.49	-0.7
1,199,279	-		GFF1189	0.49	-1.7
1,199,286	+		GFF1189	0.49	+0.6
1,199,301	-		GFF1189	0.50	+0.2
1,199,312	+		GFF1189	0.51	-1.2
1,199,320	-		GFF1189	0.51	-0.0
1,199,337	+		GFF1189	0.52	-1.9
1,199,339	-		GFF1189	0.52	-0.3
1,199,339	-		GFF1189	0.52	-0.6
1,199,345	-		GFF1189	0.53	-0.9
1,199,345	-		GFF1189	0.53	+0.9
1,199,345	-		GFF1189	0.53	+1.7
1,199,348	+		GFF1189	0.53	-1.6
1,199,348	+		GFF1189	0.53	-1.9
1,199,350	-		GFF1189	0.53	-0.3
1,199,353	+		GFF1189	0.53	-1.3
1,199,356	-		GFF1189	0.53	+1.2
1,199,366	+		GFF1189	0.54	-0.1
1,199,366	+		GFF1189	0.54	+1.5
1,199,371	-		GFF1189	0.54	+1.2
1,199,371	-		GFF1189	0.54	+0.3
1,199,386	-		GFF1189	0.55	-0.5
1,199,386	-		GFF1189	0.55	-0.7
1,199,386	-		GFF1189	0.55	+1.6
1,199,412	+		GFF1189	0.56	-1.3
1,199,421	+		GFF1189	0.57	-2.8
1,199,423	+		GFF1189	0.57	-0.4
1,199,423	+		GFF1189	0.57	+0.9
1,199,423	+		GFF1189	0.57	-0.6
1,199,431	-		GFF1189	0.57	-0.8
1,199,431	-		GFF1189	0.57	-1.1
1,199,431	-		GFF1189	0.57	-0.9
1,199,490	-		GFF1189	0.60	-0.1
1,199,507	-		GFF1189	0.61	+0.4
1,199,512	-		GFF1189	0.61	-1.4
1,199,523	+		GFF1189	0.62	-0.6
1,199,524	+		GFF1189	0.62	+0.8
1,199,531	-		GFF1189	0.62	-0.4
1,199,531	-		GFF1189	0.62	-1.3
1,199,531	-		GFF1189	0.62	-0.5
1,199,531	-		GFF1189	0.62	-0.2
1,199,545	+		GFF1189	0.63	-1.6
1,199,545	+		GFF1189	0.63	-0.9
1,199,550	+		GFF1189	0.63	-1.7
1,199,571	+		GFF1189	0.64	-0.2
1,199,572	+		GFF1189	0.65	-0.2
1,199,592	+		GFF1189	0.66	-1.7
1,199,615	+		GFF1189	0.67	-0.5
1,199,661	+		GFF1189	0.69	-0.2
1,199,661	+		GFF1189	0.69	-0.7
1,199,686	+		GFF1189	0.71	-2.0
1,199,686	+		GFF1189	0.71	-1.3
1,199,694	-		GFF1189	0.71	+0.6
1,199,704	-		GFF1189	0.72	-0.5
1,199,704	-		GFF1189	0.72	+0.4
1,199,704	-		GFF1189	0.72	-0.5
1,199,719	+		GFF1189	0.72	-1.7
1,199,719	+		GFF1189	0.72	+1.2
1,199,725	-		GFF1189	0.73	-0.5
1,199,727	-		GFF1189	0.73	-0.0
1,199,727	-		GFF1189	0.73	-0.7
1,199,768	+		GFF1189	0.75	+0.9
1,199,775	-		GFF1189	0.75	+0.4
1,199,780	-		GFF1189	0.76	-1.5
1,199,815	-		GFF1189	0.77	+0.4
1,199,815	-		GFF1189	0.77	-2.3
1,199,822	-		GFF1189	0.78	-0.3
1,199,822	-		GFF1189	0.78	-1.2
1,199,822	-		GFF1189	0.78	-0.3
1,199,827	-		GFF1189	0.78	-0.2
1,199,832	-		GFF1189	0.78	+0.4
1,199,832	-		GFF1189	0.78	-0.2
1,199,862	-		GFF1189	0.80	-0.3
1,199,862	-		GFF1189	0.80	-0.7
1,199,870	-		GFF1189	0.80	-1.6
1,199,882	+		GFF1189	0.81	-1.5
1,199,896	-		GFF1189	0.82	-0.6
1,199,979	-		GFF1189	0.86	+0.5
1,199,997	-		GFF1189	0.87	+1.6
1,200,012	+		GFF1189	0.88	+0.4
1,200,012	+		GFF1189	0.88	+0.9
1,200,020	-		GFF1189	0.88	+1.3
1,200,044	-		GFF1189	0.90	+0.3
1,200,044	-		GFF1189	0.90	-0.6
1,200,076	-				-0.5
1,200,086	-				-1.7
1,200,172	+				+0.3
1,200,177	+				+0.3
1,200,190	-				+1.0
1,200,216	+				-0.0
1,200,219	-				-0.1
1,200,256	+				-0.3
1,200,256	+				-1.4
1,200,256	+				-2.3
1,200,256	+				-2.4
1,200,256	+				-1.4
1,200,264	-				+0.1
1,200,267	+				-0.1
1,200,267	+				-1.5
1,200,267	+				-0.0
1,200,267	+				+0.8
1,200,275	-				-0.1
1,200,275	-				+0.4
1,200,275	-				+0.3
1,200,275	-				-1.3
1,200,277	+				+1.0
1,200,285	-				+0.3
1,200,286	-				-0.3
1,200,296	-				+0.4
1,200,430	+		GFF1190	0.63	+1.1
1,200,430	+		GFF1190	0.63	-1.2
1,200,434	+		GFF1190	0.65	+1.2
1,200,570	+				-0.9
1,200,570	+				+0.3
1,200,614	-				+1.1
1,200,631	-				+0.4
1,200,649	-				-0.4
1,200,661	+				+0.9
1,200,662	-				-1.2
1,200,669	-				-0.3
1,200,669	-				+0.4
1,200,680	-				+1.2
1,200,732	+				+0.3
1,200,732	+				-1.5
1,200,732	+				-0.1
1,200,732	+				-0.2
1,200,732	+				-2.2
1,200,732	+				+0.2
1,200,732	+				-0.6
1,200,732	+				+1.3
1,200,732	+				-0.0
1,200,732	+				+0.9
1,200,732	+				-0.8
1,200,732	+				-1.6
1,200,732	+				+0.4
1,200,732	+				-0.2
1,200,732	+				-0.2
1,200,732	+				+0.5
1,200,732	+				+0.0
1,200,732	+				+0.2
1,200,732	+				-0.0
1,200,740	-				-0.0
1,200,740	-				-0.3
1,200,740	-				+0.8
1,200,740	-				+0.2
1,200,740	-				+0.3
1,200,740	-				-2.9
1,200,740	-				+0.4
1,200,740	-				+0.1
1,200,742	+				+0.3
1,200,742	+				-0.2
1,200,750	-				-0.5
1,200,750	-				-0.8
1,200,758	-				-0.7
1,200,764	-				-1.2
1,200,769	+				+1.1
1,200,773	+				-0.7
1,200,774	+				-0.7
1,200,779	+				+1.3
1,200,780	+				+0.2
1,200,780	+				-1.2
1,200,780	+				-1.3
1,200,780	+				-0.2
1,200,782	-				+1.2
1,200,782	-				-1.1
1,200,782	-				-0.4
1,200,782	-				-0.4
1,200,782	-				-0.2
1,200,783	-				+0.1
1,200,785	+				+0.5
1,200,785	+				-0.2
1,200,787	-				-0.8
1,200,788	-				-0.1
1,200,788	-				+0.5
1,200,788	-				+0.6
1,200,793	-				-1.6
1,200,793	-				-1.5
1,200,793	-				-1.2
1,200,793	-				-1.0
1,200,793	-				+1.1
1,200,793	-				+0.4
1,200,798	-				+0.4
1,200,819	-				-1.2
1,200,819	-				-0.5
1,200,824	-				-0.4
1,200,854	+				-0.2
1,200,855	-				-2.2
1,200,862	-				+0.0
1,200,862	-				-0.3
1,200,895	-				-0.5
1,200,901	+				-1.4
1,200,909	-				+0.0
1,200,911	+				+0.8
1,200,911	+				-0.3
1,200,914	-				+0.1
1,200,919	-				+1.6
1,200,955	-				-0.3
1,200,963	+				+0.0
1,200,973	+				-0.5
1,200,981	-				-0.4
1,200,988	+				+1.0
1,200,993	+				-0.1
1,201,001	-				+1.0
1,201,010	+		GFF1191	0.10	-0.3
1,201,010	+		GFF1191	0.10	-2.4
1,201,010	+		GFF1191	0.10	+0.8
1,201,010	+		GFF1191	0.10	-0.8
1,201,010	+		GFF1191	0.10	-1.2
1,201,010	+		GFF1191	0.10	+0.4
1,201,010	+		GFF1191	0.10	-0.8
1,201,010	+		GFF1191	0.10	-0.4
1,201,018	-		GFF1191	0.10	+0.5
1,201,018	-		GFF1191	0.10	-1.5
1,201,039	+		GFF1191	0.11	+0.4
1,201,054	+		GFF1191	0.12	-1.3
1,201,054	+		GFF1191	0.12	-0.2
1,201,054	+		GFF1191	0.12	-0.1
1,201,054	+		GFF1191	0.12	+0.6
1,201,054	+		GFF1191	0.12	-1.1
1,201,054	+		GFF1191	0.12	-0.5
1,201,054	+		GFF1191	0.12	-0.3
1,201,054	+		GFF1191	0.12	-0.5
1,201,054	+		GFF1191	0.12	+0.1
1,201,058	+		GFF1191	0.12	-0.6
1,201,059	+		GFF1191	0.12	+0.2
1,201,062	-		GFF1191	0.12	-2.2
1,201,062	-		GFF1191	0.12	-1.4
1,201,062	-		GFF1191	0.12	+1.0
1,201,062	-		GFF1191	0.12	-1.5
1,201,062	-		GFF1191	0.12	-0.1
1,201,062	-		GFF1191	0.12	+0.2
1,201,062	-		GFF1191	0.12	-0.7
1,201,062	-		GFF1191	0.12	-0.1
1,201,062	-		GFF1191	0.12	-0.1
1,201,062	-		GFF1191	0.12	+0.2
1,201,064	+		GFF1191	0.12	-2.6
1,201,064	+		GFF1191	0.12	-1.0
1,201,064	+		GFF1191	0.12	-0.8
1,201,064	+		GFF1191	0.12	-1.2
1,201,064	+		GFF1191	0.12	+0.6
1,201,064	+		GFF1191	0.12	+0.7
1,201,064	+		GFF1191	0.12	-0.4
1,201,064	+		GFF1191	0.12	-2.3
1,201,066	+		GFF1191	0.12	-0.3
1,201,067	-		GFF1191	0.12	-0.8
1,201,067	-		GFF1191	0.12	+0.2
1,201,072	-		GFF1191	0.12	-0.5
1,201,072	-		GFF1191	0.12	-1.0
1,201,072	-		GFF1191	0.12	+0.2
1,201,072	-		GFF1191	0.12	-3.0
1,201,072	-		GFF1191	0.12	-0.9
1,201,072	-		GFF1191	0.12	-0.5
1,201,072	-		GFF1191	0.12	-1.3
1,201,074	-		GFF1191	0.12	-0.1
1,201,085	-		GFF1191	0.13	-1.9
1,201,099	-		GFF1191	0.13	+1.0
1,201,101	+		GFF1191	0.13	+0.6
1,201,109	-		GFF1191	0.13	-0.6
1,201,109	-		GFF1191	0.13	-0.1
1,201,114	-		GFF1191	0.13	-1.3
1,201,129	-		GFF1191	0.14	+0.5
1,201,141	+		GFF1191	0.14	-1.7
1,201,149	+		GFF1191	0.15	-0.1
1,201,157	-		GFF1191	0.15	-0.2
1,201,164	-		GFF1191	0.15	+0.4
1,201,169	+		GFF1191	0.15	-1.7
1,201,177	-		GFF1191	0.16	+1.6
1,201,177	-		GFF1191	0.16	-2.8
1,201,190	-		GFF1191	0.16	-0.3
1,201,204	+		GFF1191	0.16	-0.3
1,201,204	+		GFF1191	0.16	+0.1
1,201,212	-		GFF1191	0.17	-1.9
1,201,212	-		GFF1191	0.17	-0.6
1,201,214	-		GFF1191	0.17	-1.1
1,201,217	-		GFF1191	0.17	-1.9
1,201,222	+		GFF1191	0.17	+0.3
1,201,240	+		GFF1191	0.18	+0.2