Strain Fitness in Sphingobium sp. HT1-2 around GFF1164

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,168,594	+				+1.1
1,168,599	+				+1.2
1,168,643	-				-1.2
1,168,645	-				+1.4
1,168,696	+				-0.9
1,168,701	+				+1.2
1,168,704	+				-0.5
1,168,704	+				+0.4
1,168,828	+				+0.1
1,168,828	+				+0.4
1,168,840	+				-0.5
1,168,848	-				+0.3
1,168,850	-				-2.2
1,168,855	+				-0.5
1,168,860	+				+0.7
1,168,894	+				+0.4
1,168,900	-				+0.1
1,168,923	+				+0.6
1,168,925	+				+0.9
1,168,925	+				+1.8
1,168,925	+				+0.2
1,168,931	-				-1.0
1,168,946	+				+0.5
1,168,946	+				+1.0
1,168,954	-				+2.2
1,168,954	-				+1.7
1,168,959	+				-0.2
1,168,966	+				+1.3
1,168,983	-				+1.8
1,168,999	-				+1.0
1,169,001	+				-0.8
1,169,001	+				+0.1
1,169,019	-				-0.6
1,169,019	-				+0.5
1,169,019	-				+1.6
1,169,019	-				+1.4
1,169,019	-				+1.0
1,169,061	+				+0.8
1,169,085	+				-0.3
1,169,104	+		GFF1163	0.15	+0.7
1,169,134	+		GFF1163	0.31	+1.2
1,169,140	-		GFF1163	0.34	+0.6
1,169,166	-		GFF1163	0.49	-1.0
1,169,168	+		GFF1163	0.50	-0.6
1,169,168	+		GFF1163	0.50	-1.1
1,169,168	+		GFF1163	0.50	+0.4
1,169,170	+		GFF1163	0.51	+0.2
1,169,170	+		GFF1163	0.51	-2.0
1,169,176	-		GFF1163	0.54	-0.4
1,169,176	-		GFF1163	0.54	-0.6
1,169,176	-		GFF1163	0.54	+0.7
1,169,180	+		GFF1163	0.56	+1.6
1,169,188	-		GFF1163	0.61	+0.3
1,169,192	-		GFF1163	0.63	-2.9
1,169,214	+		GFF1163	0.75	-1.4
1,169,214	+		GFF1163	0.75	-0.9
1,169,214	+		GFF1163	0.75	-1.2
1,169,214	+		GFF1163	0.75	+1.0
1,169,214	+		GFF1163	0.75	-1.4
1,169,214	+		GFF1163	0.75	+0.3
1,169,222	-		GFF1163	0.79	-0.6
1,169,222	-		GFF1163	0.79	+0.2
1,169,227	+		GFF1163	0.82	-0.2
1,169,236	+		GFF1163	0.87	-2.1
1,169,240	-		GFF1163	0.89	+0.3
1,169,241	+				-2.0
1,169,253	+				+1.3
1,169,254	-				-1.1
1,169,259	-				-0.6
1,169,260	+				+0.2
1,169,263	-				-0.8
1,169,268	-				+1.3
1,169,305	+				+0.4
1,169,319	+				-1.8
1,169,324	+				-0.6
1,169,336	+				+0.1
1,169,354	-				-0.4
1,169,397	-				-0.7
1,169,397	-				+0.7
1,169,397	-				-0.6
1,169,397	-				+1.4
1,169,398	+				-0.5
1,169,474	+				-0.4
1,169,502	+				+0.1
1,169,545	+				-1.6
1,169,553	-				+0.2
1,169,564	-				-0.4
1,169,578	-				+1.0
1,169,585	+				-0.1
1,169,592	+		GFF1164	0.10	+0.4
1,169,594	+		GFF1164	0.10	-1.4
1,169,594	+		GFF1164	0.10	-2.6
1,169,594	+		GFF1164	0.10	+0.1
1,169,623	-		GFF1164	0.12	-0.0
1,169,624	+		GFF1164	0.12	+0.7
1,169,629	+		GFF1164	0.12	-0.6
1,169,632	-		GFF1164	0.13	-0.3
1,169,632	-		GFF1164	0.13	-0.3
1,169,637	-		GFF1164	0.13	-3.4
1,169,637	-		GFF1164	0.13	-1.3
1,169,670	+		GFF1164	0.15	-0.3
1,169,672	+		GFF1164	0.15	+1.5
1,169,680	-		GFF1164	0.16	+1.5
1,169,686	+		GFF1164	0.16	+0.1
1,169,689	-		GFF1164	0.16	-0.6
1,169,751	+		GFF1164	0.20	+0.1
1,169,766	-		GFF1164	0.21	-1.9
1,169,766	-		GFF1164	0.21	-0.5
1,169,768	+		GFF1164	0.22	+0.1
1,169,776	-		GFF1164	0.22	-1.4
1,169,783	+		GFF1164	0.23	-1.4
1,169,788	+		GFF1164	0.23	+2.0
1,169,794	-		GFF1164	0.23	+0.6
1,169,807	+		GFF1164	0.24	-0.4
1,169,820	+		GFF1164	0.25	+0.6
1,169,820	+		GFF1164	0.25	-0.4
1,169,828	+		GFF1164	0.26	+1.0
1,169,828	+		GFF1164	0.26	+0.5
1,169,834	+		GFF1164	0.26	-0.4
1,169,834	+		GFF1164	0.26	-0.3
1,169,900	-		GFF1164	0.30	-0.3
1,169,916	+		GFF1164	0.31	+0.6
1,169,916	-		GFF1164	0.31	+1.3
1,169,918	+		GFF1164	0.31	-0.6
1,169,918	+		GFF1164	0.31	-0.5
1,169,918	+		GFF1164	0.31	-0.7
1,169,921	-		GFF1164	0.32	-1.3
1,169,954	+		GFF1164	0.34	-0.5
1,169,958	+		GFF1164	0.34	-0.4
1,169,958	+		GFF1164	0.34	-0.3
1,169,966	-		GFF1164	0.35	-0.4
1,169,966	-		GFF1164	0.35	+0.7
1,170,010	+		GFF1164	0.37	-0.7
1,170,020	-		GFF1164	0.38	+0.2
1,170,025	-		GFF1164	0.38	+0.4
1,170,025	-		GFF1164	0.38	-0.6
1,170,025	-		GFF1164	0.38	-0.2
1,170,028	-		GFF1164	0.39	-1.1
1,170,035	+		GFF1164	0.39	-0.9
1,170,035	+		GFF1164	0.39	+1.9
1,170,043	-		GFF1164	0.40	+0.9
1,170,056	+		GFF1164	0.40	-3.0
1,170,056	+		GFF1164	0.40	+1.3
1,170,056	+		GFF1164	0.40	-0.5
1,170,056	+		GFF1164	0.40	-0.4
1,170,064	-		GFF1164	0.41	-0.3
1,170,082	+		GFF1164	0.42	+0.3
1,170,096	+		GFF1164	0.43	+0.2
1,170,097	-		GFF1164	0.43	-0.1
1,170,119	-		GFF1164	0.45	-1.4
1,170,122	+		GFF1164	0.45	+0.2
1,170,130	-		GFF1164	0.45	-1.6
1,170,146	+		GFF1164	0.46	-1.8
1,170,146	+		GFF1164	0.46	+1.3
1,170,146	+		GFF1164	0.46	+0.2
1,170,146	+		GFF1164	0.46	+1.5
1,170,146	+		GFF1164	0.46	-0.1
1,170,146	+		GFF1164	0.46	-0.1
1,170,154	-		GFF1164	0.47	+0.7
1,170,154	-		GFF1164	0.47	+1.3
1,170,154	-		GFF1164	0.47	-1.6
1,170,154	-		GFF1164	0.47	-2.0
1,170,154	-		GFF1164	0.47	+0.5
1,170,154	-		GFF1164	0.47	-1.5
1,170,154	-		GFF1164	0.47	+0.4
1,170,154	-		GFF1164	0.47	-1.6
1,170,155	+		GFF1164	0.47	+0.1
1,170,163	-		GFF1164	0.48	+1.5
1,170,179	-		GFF1164	0.49	+0.1
1,170,187	+		GFF1164	0.49	+0.0
1,170,187	+		GFF1164	0.49	+0.5
1,170,195	-		GFF1164	0.50	-0.2
1,170,195	-		GFF1164	0.50	+0.2
1,170,205	+		GFF1164	0.50	+0.1
1,170,212	+		GFF1164	0.51	+0.5
1,170,225	+		GFF1164	0.52	+0.7
1,170,225	+		GFF1164	0.52	+0.6
1,170,225	+		GFF1164	0.52	+0.3
1,170,231	-		GFF1164	0.52	-0.1
1,170,233	-		GFF1164	0.52	-0.2
1,170,243	-		GFF1164	0.53	-1.1
1,170,250	-		GFF1164	0.53	-1.6
1,170,250	-		GFF1164	0.53	-0.2
1,170,255	-		GFF1164	0.54	-0.5
1,170,277	+		GFF1164	0.55	+0.4
1,170,284	+		GFF1164	0.55	+0.0
1,170,300	+		GFF1164	0.56	-0.0
1,170,317	+		GFF1164	0.58	+0.8
1,170,317	+		GFF1164	0.58	-0.3
1,170,317	+		GFF1164	0.58	-1.1
1,170,317	+		GFF1164	0.58	-0.9
1,170,317	+		GFF1164	0.58	+0.4
1,170,317	+		GFF1164	0.58	+0.3
1,170,317	+		GFF1164	0.58	+1.4
1,170,317	+		GFF1164	0.58	+0.0
1,170,317	+		GFF1164	0.58	+0.4
1,170,317	+		GFF1164	0.58	-1.1
1,170,317	+		GFF1164	0.58	+0.2
1,170,317	+		GFF1164	0.58	-0.4
1,170,317	+		GFF1164	0.58	-0.7
1,170,317	+		GFF1164	0.58	-0.6
1,170,317	+		GFF1164	0.58	+0.4
1,170,317	+		GFF1164	0.58	+1.4
1,170,317	+		GFF1164	0.58	-1.2
1,170,317	+		GFF1164	0.58	+0.4
1,170,317	+		GFF1164	0.58	+0.8
1,170,317	+		GFF1164	0.58	+0.6
1,170,317	+		GFF1164	0.58	+0.8
1,170,317	+		GFF1164	0.58	-0.1
1,170,317	+		GFF1164	0.58	-1.5
1,170,325	-		GFF1164	0.58	+0.6
1,170,325	-		GFF1164	0.58	-0.4
1,170,325	-		GFF1164	0.58	+0.6
1,170,325	-		GFF1164	0.58	+1.2
1,170,325	-		GFF1164	0.58	+0.6
1,170,325	-		GFF1164	0.58	+0.5
1,170,325	-		GFF1164	0.58	-1.0
1,170,325	-		GFF1164	0.58	-0.3
1,170,325	-		GFF1164	0.58	-0.1
1,170,325	-		GFF1164	0.58	-1.2
1,170,325	-		GFF1164	0.58	-1.2
1,170,325	-		GFF1164	0.58	-0.9
1,170,325	-		GFF1164	0.58	-0.7
1,170,334	-		GFF1164	0.59	-1.1
1,170,336	+		GFF1164	0.59	-0.0
1,170,336	+		GFF1164	0.59	+1.0
1,170,336	+		GFF1164	0.59	-0.8
1,170,336	+		GFF1164	0.59	-1.0
1,170,336	+		GFF1164	0.59	-0.6
1,170,336	+		GFF1164	0.59	-3.0
1,170,336	+		GFF1164	0.59	+0.6
1,170,336	+		GFF1164	0.59	-2.5
1,170,336	+		GFF1164	0.59	-0.9
1,170,336	+		GFF1164	0.59	-1.4
1,170,336	+		GFF1164	0.59	-0.8
1,170,336	+		GFF1164	0.59	-0.8
1,170,336	+		GFF1164	0.59	+0.8
1,170,336	+		GFF1164	0.59	+0.4
1,170,336	+		GFF1164	0.59	+1.0
1,170,336	+		GFF1164	0.59	-1.4
1,170,336	+		GFF1164	0.59	+0.2
1,170,336	+		GFF1164	0.59	-0.1
1,170,336	+		GFF1164	0.59	-0.3
1,170,336	+		GFF1164	0.59	+1.0
1,170,336	+		GFF1164	0.59	-1.3
1,170,336	+		GFF1164	0.59	-0.0
1,170,336	+		GFF1164	0.59	+1.1
1,170,344	-		GFF1164	0.59	-2.1
1,170,344	-		GFF1164	0.59	-0.2
1,170,344	-		GFF1164	0.59	-2.4
1,170,344	-		GFF1164	0.59	-1.4
1,170,344	-		GFF1164	0.59	+0.3
1,170,344	-		GFF1164	0.59	-0.7
1,170,344	-		GFF1164	0.59	-1.5
1,170,344	-		GFF1164	0.59	-1.3
1,170,344	-		GFF1164	0.59	+0.2
1,170,344	-		GFF1164	0.59	+0.8
1,170,344	-		GFF1164	0.59	-1.4
1,170,344	-		GFF1164	0.59	-0.6
1,170,344	-		GFF1164	0.59	-0.9
1,170,344	-		GFF1164	0.59	+0.2
1,170,344	-		GFF1164	0.59	-2.0
1,170,344	-		GFF1164	0.59	+0.5
1,170,344	-		GFF1164	0.59	-0.9
1,170,344	-		GFF1164	0.59	+2.3
1,170,344	-		GFF1164	0.59	-0.8
1,170,344	-		GFF1164	0.59	-0.5
1,170,344	-		GFF1164	0.59	+0.2
1,170,346	+		GFF1164	0.60	+0.4
1,170,351	+		GFF1164	0.60	+0.7
1,170,363	+		GFF1164	0.61	-1.3
1,170,373	+		GFF1164	0.61	-1.4
1,170,394	+		GFF1164	0.63	+0.8
1,170,416	+		GFF1164	0.64	-0.1
1,170,416	+		GFF1164	0.64	-0.0
1,170,416	+		GFF1164	0.64	-1.1
1,170,424	-		GFF1164	0.65	+0.5
1,170,445	-		GFF1164	0.66	-1.0
1,170,456	-		GFF1164	0.67	-0.5
1,170,472	+		GFF1164	0.68	+0.3
1,170,472	+		GFF1164	0.68	-1.6
1,170,482	+		GFF1164	0.68	+0.7
1,170,493	+		GFF1164	0.69	-0.1
1,170,516	-		GFF1164	0.71	-0.3
1,170,535	+		GFF1164	0.72	+0.4
1,170,542	+		GFF1164	0.72	-0.6
1,170,543	-		GFF1164	0.72	-0.1
1,170,555	+		GFF1164	0.73	-0.1
1,170,563	-		GFF1164	0.74	+0.9
1,170,568	+		GFF1164	0.74	+0.1
1,170,568	+		GFF1164	0.74	-0.4
1,170,568	+		GFF1164	0.74	+0.1
1,170,572	-		GFF1164	0.74	-0.5
1,170,573	+		GFF1164	0.74	-1.1
1,170,576	-		GFF1164	0.75	-0.1
1,170,581	-		GFF1164	0.75	-0.6
1,170,586	+		GFF1164	0.75	-1.1
1,170,594	-		GFF1164	0.76	-0.9
1,170,610	+		GFF1164	0.77	+0.5
1,170,610	+		GFF1164	0.77	+0.1
1,170,611	+		GFF1164	0.77	-2.3
1,170,619	-		GFF1164	0.77	-1.3
1,170,634	+		GFF1164	0.78	+0.3
1,170,637	-		GFF1164	0.79	+0.5
1,170,639	+		GFF1164	0.79	+0.7
1,170,639	+		GFF1164	0.79	-0.4
1,170,639	+		GFF1164	0.79	+0.5
1,170,639	+		GFF1164	0.79	+0.3
1,170,639	+		GFF1164	0.79	-0.6
1,170,639	+		GFF1164	0.79	-1.1
1,170,639	+		GFF1164	0.79	+0.7
1,170,639	+		GFF1164	0.79	-1.6
1,170,641	+		GFF1164	0.79	-0.3
1,170,641	+		GFF1164	0.79	+1.1
1,170,647	-		GFF1164	0.79	-0.1
1,170,647	-		GFF1164	0.79	-0.5
1,170,647	-		GFF1164	0.79	+1.2
1,170,647	-		GFF1164	0.79	-1.3
1,170,647	-		GFF1164	0.79	-0.6
1,170,647	-		GFF1164	0.79	+0.2
1,170,649	-		GFF1164	0.79	-0.2
1,170,651	+		GFF1164	0.80	+0.6
1,170,654	-		GFF1164	0.80	+0.2
1,170,658	+		GFF1164	0.80	-0.4
1,170,663	+		GFF1164	0.80	-0.5
1,170,663	+		GFF1164	0.80	+2.1
1,170,663	+		GFF1164	0.80	+1.4
1,170,663	+		GFF1164	0.80	+1.3
1,170,663	+		GFF1164	0.80	+0.5
1,170,663	+		GFF1164	0.80	+0.4
1,170,666	-		GFF1164	0.81	-1.4
1,170,671	-		GFF1164	0.81	+0.3
1,170,671	-		GFF1164	0.81	-1.3
1,170,671	-		GFF1164	0.81	+0.1
1,170,671	-		GFF1164	0.81	-1.1
1,170,672	-		GFF1164	0.81	-2.6
1,170,681	+		GFF1164	0.81	-1.4
1,170,686	+		GFF1164	0.82	+0.4
1,170,697	+		GFF1164	0.83	+0.8
1,170,702	+		GFF1164	0.83	+0.3
1,170,702	+		GFF1164	0.83	+0.2
1,170,715	-		GFF1164	0.84	-0.9
1,170,725	+		GFF1164	0.84	-2.2
1,170,728	-		GFF1164	0.85	-0.8
1,170,728	-		GFF1164	0.85	-1.1
1,170,730	+		GFF1164	0.85	+0.6
1,170,730	+		GFF1164	0.85	+0.3
1,170,733	-		GFF1164	0.85	+0.3
1,170,733	-		GFF1164	0.85	+1.4
1,170,767	+		GFF1164	0.87	+0.6
1,170,774	-		GFF1164	0.88	+0.1
1,170,774	-		GFF1164	0.88	+0.3
1,170,796	+		GFF1164	0.89	-0.7
1,170,804	-		GFF1164	0.90	-2.1
1,170,809	+		GFF1164	0.90	-0.2
1,170,816	+				+2.3
1,170,816	+				+0.9
1,170,816	+				-0.3
1,170,816	+				-0.3
1,170,816	+				-1.1
1,170,816	+				+0.1
1,170,821	+				-1.8
1,170,823	-				-0.9
1,170,823	-				+0.1
1,170,824	-				+1.8
1,170,824	-				-1.7
1,170,826	+				+0.8
1,170,832	+				+0.1
1,170,834	-				-0.3
1,170,834	-				+0.2
1,170,834	-				+1.4
1,170,834	-				+0.3
1,170,834	-				+0.6
1,170,839	+				+0.1
1,170,840	-				-1.0
1,170,840	-				-0.1
1,170,847	-				-0.7
1,170,847	-				-0.4
1,170,884	-				-1.6
1,170,886	+				+0.3
1,170,913	+				+0.9
1,170,921	-				+0.8
1,170,927	+				-0.5
1,170,937	-				-0.5
1,170,998	+				-0.1
1,171,019	+				-0.3
1,171,022	-				-2.1
1,171,076	+				+0.3
1,171,081	+				-1.7
1,171,171	+				+1.4
1,171,171	+				-0.1
1,171,177	+				-0.1
1,171,179	-				+0.3
1,171,179	-				-1.6
1,171,202	+				-1.1
1,171,202	+				-0.7
1,171,209	-				-1.3
1,171,220	-				-0.4
1,171,228	-				-0.6
1,171,228	-				-0.3
1,171,270	+				-1.1
1,171,271	+				+0.5
1,171,271	+				+0.1
1,171,271	+				-0.6
1,171,271	+				+0.6
1,171,271	+				-1.8
1,171,271	+				-0.7
1,171,271	+				-0.4
1,171,271	+				+0.1
1,171,271	+				-1.1
1,171,271	+				-0.1
1,171,271	+				-0.4
1,171,272	+				-1.1
1,171,273	+				-0.2
1,171,273	+				+0.4
1,171,279	-				-1.4
1,171,279	-				-1.8
1,171,279	-				-0.9
1,171,279	-				+0.6
1,171,279	-				+0.1
1,171,279	-				+0.5
1,171,279	-				+0.2
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1,171,279	-				+1.4
1,171,281	-				-0.5
1,171,288	+				+1.3
1,171,308	-		GFF1165	0.15	+0.1
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1,171,326	+		GFF1165	0.29	-1.1
1,171,329	-		GFF1165	0.32	-0.6
1,171,349	-		GFF1165	0.48	+0.3
1,171,375	+		GFF1165	0.69	-0.4
1,171,384	-		GFF1165	0.76	-2.0
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1,171,445	+				+1.4
1,171,481	+				+0.1
1,171,503	+				-1.3
1,171,503	+				+0.2
1,171,506	-				-1.1
1,171,511	-				-0.7
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1,171,511	-				+1.4
1,171,511	-				-0.4
1,171,521	+				-0.1
1,171,521	+				+0.3
1,171,566	+				+1.9
1,171,574	-				-0.4
1,171,574	-				-0.1
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1,171,640	-				-0.7
1,171,646	+				+0.9
1,171,646	+				-0.7
1,171,654	-				-1.4
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1,171,687	+		GFF1166	0.12	-1.7
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1,171,694	-		GFF1166	0.12	-0.0
1,171,694	-		GFF1166	0.12	-1.3
1,171,721	+		GFF1166	0.14	-0.6
1,171,739	+		GFF1166	0.15	+0.2
1,171,739	+		GFF1166	0.15	-0.6
1,171,739	+		GFF1166	0.15	+0.5
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1,171,747	-		GFF1166	0.15	-0.4
1,171,747	-		GFF1166	0.15	-0.3
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1,171,747	-		GFF1166	0.15	-1.4
1,171,747	-		GFF1166	0.15	-1.0
1,171,747	-		GFF1166	0.15	-1.3
1,171,747	-		GFF1166	0.15	-0.7
1,171,788	-		GFF1166	0.18	-0.9
1,171,840	+		GFF1166	0.21	-1.6
1,171,845	+		GFF1166	0.21	-0.3
1,171,845	+		GFF1166	0.21	+0.2
1,171,845	+		GFF1166	0.21	-0.2
1,171,845	+		GFF1166	0.21	-1.6
1,171,848	-		GFF1166	0.21	+0.1
1,171,853	-		GFF1166	0.21	-2.0
1,171,853	-		GFF1166	0.21	-0.9
1,171,853	-		GFF1166	0.21	-0.9
1,171,853	-		GFF1166	0.21	-1.7
1,171,853	-		GFF1166	0.21	-2.5
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1,171,856	+		GFF1166	0.21	+0.5
1,171,862	+		GFF1166	0.22	-0.2
1,171,879	+		GFF1166	0.23	-0.0
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1,171,879	+		GFF1166	0.23	-0.3
1,171,879	+		GFF1166	0.23	-0.7
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1,171,879	+		GFF1166	0.23	+1.3
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1,171,879	+		GFF1166	0.23	-1.9
1,171,879	+		GFF1166	0.23	+0.4
1,171,885	+		GFF1166	0.23	-0.0
1,171,887	-		GFF1166	0.23	-0.3
1,171,887	-		GFF1166	0.23	-0.9
1,171,887	-		GFF1166	0.23	-2.2
1,171,887	-		GFF1166	0.23	+0.2
1,171,903	+		GFF1166	0.24	-2.4
1,171,908	+		GFF1166	0.24	+0.3
1,171,911	-		GFF1166	0.25	+0.1
1,171,914	+		GFF1166	0.25	+0.8
1,171,922	-		GFF1166	0.25	+0.1
1,171,931	+		GFF1166	0.26	-0.3
1,171,931	+		GFF1166	0.26	-0.4
1,171,931	+		GFF1166	0.26	-1.5
1,171,933	+		GFF1166	0.26	-0.5
1,171,961	+		GFF1166	0.28	-0.1