Strain Fitness in Sphingobium sp. HT1-2 around GFF1148

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,153,282	-		GFF1147	0.60	-0.0
1,153,282	-		GFF1147	0.60	-1.3
1,153,291	+		GFF1147	0.61	-1.6
1,153,291	+		GFF1147	0.61	+1.3
1,153,291	+		GFF1147	0.61	-1.3
1,153,299	-		GFF1147	0.61	+0.3
1,153,344	-		GFF1147	0.63	+0.7
1,153,361	+		GFF1147	0.64	-0.8
1,153,386	+		GFF1147	0.65	-0.0
1,153,386	+		GFF1147	0.65	+0.1
1,153,386	+		GFF1147	0.65	-0.1
1,153,386	+		GFF1147	0.65	+0.9
1,153,394	-		GFF1147	0.65	-0.8
1,153,394	-		GFF1147	0.65	+0.6
1,153,404	-		GFF1147	0.66	+0.9
1,153,440	-		GFF1147	0.67	+0.2
1,153,440	-		GFF1147	0.67	+1.0
1,153,442	-		GFF1147	0.67	+1.4
1,153,476	-		GFF1147	0.69	-1.0
1,153,480	+		GFF1147	0.69	-0.8
1,153,507	-		GFF1147	0.70	-1.0
1,153,524	+		GFF1147	0.71	+1.7
1,153,524	-		GFF1147	0.71	+0.5
1,153,524	-		GFF1147	0.71	-0.0
1,153,528	+		GFF1147	0.71	-2.2
1,153,528	+		GFF1147	0.71	+0.6
1,153,531	-		GFF1147	0.71	-0.1
1,153,536	-		GFF1147	0.72	-1.8
1,153,536	-		GFF1147	0.72	-0.1
1,153,536	-		GFF1147	0.72	-0.8
1,153,541	-		GFF1147	0.72	+0.3
1,153,581	-		GFF1147	0.74	-0.8
1,153,593	-		GFF1147	0.74	-0.6
1,153,596	+		GFF1147	0.74	-0.1
1,153,596	+		GFF1147	0.74	+0.7
1,153,596	+		GFF1147	0.74	+0.6
1,153,601	+		GFF1147	0.74	-0.0
1,153,603	-		GFF1147	0.75	+0.5
1,153,604	-		GFF1147	0.75	+2.1
1,153,604	-		GFF1147	0.75	-1.6
1,153,636	+		GFF1147	0.76	-0.3
1,153,636	+		GFF1147	0.76	+0.4
1,153,636	+		GFF1147	0.76	-1.7
1,153,636	+		GFF1147	0.76	-1.0
1,153,637	+		GFF1147	0.76	+0.4
1,153,644	-		GFF1147	0.76	+0.8
1,153,644	-		GFF1147	0.76	-0.3
1,153,675	-		GFF1147	0.78	-0.6
1,153,675	-		GFF1147	0.78	-1.3
1,153,713	-		GFF1147	0.79	-1.6
1,153,713	-		GFF1147	0.79	-0.3
1,153,790	-		GFF1147	0.83	+0.2
1,153,813	-		GFF1147	0.84	+0.3
1,153,832	+		GFF1147	0.85	+0.1
1,153,832	+		GFF1147	0.85	-0.4
1,153,832	+		GFF1147	0.85	-0.1
1,153,832	+		GFF1147	0.85	+0.4
1,153,832	+		GFF1147	0.85	+0.7
1,153,839	+		GFF1147	0.85	+0.4
1,153,840	-		GFF1147	0.85	-2.2
1,153,840	-		GFF1147	0.85	-0.2
1,153,847	-		GFF1147	0.85	+0.6
1,153,868	+		GFF1147	0.86	-0.8
1,153,870	+		GFF1147	0.86	-0.6
1,153,876	-		GFF1147	0.87	+0.2
1,153,876	-		GFF1147	0.87	-0.4
1,153,878	+		GFF1147	0.87	-0.2
1,153,902	+		GFF1147	0.88	+0.7
1,153,907	+		GFF1147	0.88	-0.3
1,153,968	+				+0.1
1,153,994	+				-2.3
1,153,999	+				+1.2
1,154,002	+				-1.6
1,154,004	+				+0.8
1,154,004	+				-0.1
1,154,004	+				-0.0
1,154,004	+				-1.0
1,154,004	+				+0.6
1,154,004	+				+0.2
1,154,004	+				-1.2
1,154,004	+				+0.7
1,154,004	+				+2.0
1,154,004	+				+1.2
1,154,004	+				-0.4
1,154,004	+				-0.4
1,154,004	+				+2.2
1,154,004	+				+0.6
1,154,004	+				-1.3
1,154,004	+				+0.0
1,154,004	+				-0.1
1,154,004	+				+0.2
1,154,004	+				-1.8
1,154,004	+				-0.3
1,154,004	+				-0.4
1,154,004	+				-0.3
1,154,004	+				+0.6
1,154,004	+				-0.3
1,154,004	+				-0.2
1,154,004	+				+0.0
1,154,004	+				-0.3
1,154,004	+				+0.8
1,154,004	+				+0.3
1,154,004	+				-0.8
1,154,004	+				+0.4
1,154,004	+				-1.3
1,154,004	+				+0.6
1,154,004	+				+0.7
1,154,004	+				-1.0
1,154,004	+				+0.6
1,154,004	+				-0.8
1,154,010	+				+0.3
1,154,012	-				-1.8
1,154,012	-				+0.7
1,154,012	-				-0.1
1,154,012	-				-1.2
1,154,012	-				-2.2
1,154,012	-				-0.0
1,154,012	-				-0.2
1,154,012	-				-1.0
1,154,012	-				+0.8
1,154,012	-				+0.5
1,154,012	-				+0.3
1,154,012	-				-0.7
1,154,012	-				+0.2
1,154,012	-				-1.3
1,154,012	-				+0.4
1,154,012	-				-0.3
1,154,012	-				-0.2
1,154,012	-				-0.1
1,154,012	-				-2.1
1,154,012	-				+1.3
1,154,012	-				-0.6
1,154,012	-				+1.4
1,154,012	-				+0.4
1,154,012	-				+1.0
1,154,012	-				-0.0
1,154,012	-				-1.3
1,154,012	-				+0.0
1,154,012	-				+2.2
1,154,012	-				+0.1
1,154,012	-				+0.1
1,154,017	-				-1.6
1,154,022	-				-0.4
1,154,028	-				+2.2
1,154,029	+				-0.5
1,154,032	+				-0.2
1,154,040	-				+1.1
1,154,047	-				-1.0
1,154,052	-				+0.7
1,154,065	+				+1.6
1,154,088	-				+1.5
1,154,106	-				+1.4
1,154,113	+				+2.2
1,154,113	+				+0.1
1,154,113	+				-1.6
1,154,118	+				+1.2
1,154,121	-				+0.6
1,154,121	-				-0.6
1,154,121	-				+1.2
1,154,121	-				-0.7
1,154,126	-				+0.4
1,154,128	+				+1.1
1,154,128	+				-0.2
1,154,131	-				+0.9
1,154,133	+				+0.4
1,154,133	+				+0.1
1,154,133	+				-0.8
1,154,133	+				+1.4
1,154,136	-				+0.7
1,154,139	+				+0.8
1,154,141	-				-0.3
1,154,141	-				-1.4
1,154,141	-				+0.5
1,154,141	-				+0.9
1,154,141	-				+1.3
1,154,141	-				+0.9
1,154,141	-				-1.9
1,154,146	-				+1.6
1,154,198	-				+1.0
1,154,200	-				-0.9
1,154,228	+				+0.1
1,154,310	-				-0.6
1,154,332	-				-2.0
1,154,358	+				-2.3
1,154,395	-				+0.4
1,154,404	+				-1.6
1,154,430	-		GFF1148	0.11	-2.9
1,154,446	+		GFF1148	0.12	-0.5
1,154,458	+		GFF1148	0.13	-1.7
1,154,459	+		GFF1148	0.13	-1.3
1,154,459	+		GFF1148	0.13	-2.5
1,154,464	+		GFF1148	0.13	-0.1
1,154,464	+		GFF1148	0.13	-1.3
1,154,464	+		GFF1148	0.13	-2.8
1,154,464	+		GFF1148	0.13	-2.5
1,154,466	-		GFF1148	0.13	-2.8
1,154,467	-		GFF1148	0.13	-3.1
1,154,469	+		GFF1148	0.13	+0.1
1,154,477	-		GFF1148	0.14	-1.7
1,154,477	-		GFF1148	0.14	-2.3
1,154,489	-		GFF1148	0.15	-2.9
1,154,492	+		GFF1148	0.15	-0.9
1,154,500	-		GFF1148	0.16	-1.1
1,154,507	-		GFF1148	0.16	-2.6
1,154,511	+		GFF1148	0.16	+0.2
1,154,519	-		GFF1148	0.17	-1.8
1,154,555	+		GFF1148	0.19	-2.6
1,154,555	-		GFF1148	0.19	-1.6
1,154,565	-		GFF1148	0.20	-1.5
1,154,567	+		GFF1148	0.20	-2.1
1,154,580	-		GFF1148	0.21	-2.3
1,154,605	+		GFF1148	0.23	-1.0
1,154,605	+		GFF1148	0.23	-0.4
1,154,613	-		GFF1148	0.23	-3.3
1,154,621	-		GFF1148	0.24	-3.9
1,154,633	-		GFF1148	0.25	-2.0
1,154,635	-		GFF1148	0.25	-1.3
1,154,638	-		GFF1148	0.25	-2.2
1,154,662	+		GFF1148	0.27	-1.9
1,154,714	+		GFF1148	0.30	-2.8
1,154,719	+		GFF1148	0.31	-2.3
1,154,719	+		GFF1148	0.31	-1.8
1,154,722	-		GFF1148	0.31	-2.3
1,154,722	-		GFF1148	0.31	-0.2
1,154,727	-		GFF1148	0.31	-3.0
1,154,727	-		GFF1148	0.31	+2.1
1,154,766	-		GFF1148	0.34	-0.4
1,154,807	+		GFF1148	0.37	-2.7
1,154,815	-		GFF1148	0.37	-2.7
1,154,815	-		GFF1148	0.37	-2.6
1,154,815	-		GFF1148	0.37	-2.4
1,154,844	-		GFF1148	0.39	-1.5
1,154,867	+		GFF1148	0.41	-1.0
1,154,868	-		GFF1148	0.41	-2.7
1,154,917	-		GFF1148	0.44	-1.8
1,154,927	+		GFF1148	0.45	-1.1
1,154,927	+		GFF1148	0.45	-2.6
1,154,935	-		GFF1148	0.46	-1.6
1,154,945	-		GFF1148	0.46	-2.5
1,154,954	-		GFF1148	0.47	-1.1
1,154,973	-		GFF1148	0.48	-1.3
1,155,025	-		GFF1148	0.52	-2.1
1,155,025	-		GFF1148	0.52	-1.8
1,155,044	-		GFF1148	0.53	-3.0
1,155,061	+		GFF1148	0.54	-1.6
1,155,095	+		GFF1148	0.57	-2.8
1,155,114	+		GFF1148	0.58	-1.7
1,155,164	+		GFF1148	0.62	-1.3
1,155,164	+		GFF1148	0.62	-0.8
1,155,167	-		GFF1148	0.62	+0.1
1,155,167	-		GFF1148	0.62	-2.4
1,155,200	+		GFF1148	0.64	-1.4
1,155,209	-		GFF1148	0.65	-1.7
1,155,257	+		GFF1148	0.68	-0.9
1,155,282	-		GFF1148	0.70	-3.5
1,155,402	+		GFF1148	0.78	-0.9
1,155,427	+		GFF1148	0.80	-2.4
1,155,438	+		GFF1148	0.81	+0.4
1,155,451	+		GFF1148	0.81	-3.2
1,155,451	+		GFF1148	0.81	-2.8
1,155,451	+		GFF1148	0.81	-3.2
1,155,459	-		GFF1148	0.82	-3.5
1,155,459	-		GFF1148	0.82	-1.8
1,155,459	-		GFF1148	0.82	-1.8
1,155,459	-		GFF1148	0.82	-1.2
1,155,460	+		GFF1148	0.82	-1.9
1,155,482	+		GFF1148	0.84	-1.9
1,155,489	+		GFF1148	0.84	-1.4
1,155,494	+		GFF1148	0.84	-0.8
1,155,497	-		GFF1148	0.85	-2.4
1,155,523	+		GFF1148	0.86	-1.6
1,155,528	+		GFF1148	0.87	-3.5
1,155,536	-		GFF1148	0.87	-0.4
1,155,619	+				-1.2
1,155,620	+				-1.3
1,155,650	+				-2.3
1,155,655	+				-1.8
1,155,655	+				-1.4
1,155,681	+				-2.3
1,155,691	+				-1.6
1,155,696	+				-1.6
1,155,715	+				-0.0
1,155,723	-				-1.1
1,155,795	+				-1.3
1,155,816	+				-2.0
1,155,824	+				+0.3
1,155,824	+				-1.8
1,155,824	+				-2.6
1,155,824	+				-2.0
1,155,829	+		GFF1149	0.10	-1.6
1,155,832	-		GFF1149	0.10	-2.0
1,155,832	-		GFF1149	0.10	-2.3
1,155,832	-		GFF1149	0.10	-2.5
1,155,836	+		GFF1149	0.11	-2.5
1,155,856	+		GFF1149	0.13	-2.8
1,155,868	+		GFF1149	0.14	-3.4
1,155,876	-		GFF1149	0.14	-1.7
1,155,890	-		GFF1149	0.16	-1.1
1,155,895	-		GFF1149	0.16	-0.4
1,155,916	-		GFF1149	0.18	-1.7
1,155,923	+		GFF1149	0.19	-1.7
1,155,946	+		GFF1149	0.21	-3.1
1,155,946	+		GFF1149	0.21	-2.5
1,155,946	+		GFF1149	0.21	+0.2
1,155,946	+		GFF1149	0.21	-2.6
1,155,946	+		GFF1149	0.21	-2.9
1,155,951	+		GFF1149	0.21	-0.6
1,155,951	+		GFF1149	0.21	-2.2
1,155,954	-		GFF1149	0.21	-1.4
1,155,954	-		GFF1149	0.21	-0.9
1,155,954	-		GFF1149	0.21	+0.4
1,155,954	-		GFF1149	0.21	-1.4
1,155,961	+		GFF1149	0.22	-2.0
1,155,969	-		GFF1149	0.23	-3.6
1,155,987	+		GFF1149	0.24	-1.7
1,156,005	-		GFF1149	0.26	-2.6
1,156,017	-		GFF1149	0.27	-3.8
1,156,017	-		GFF1149	0.27	-1.9
1,156,017	-		GFF1149	0.27	-1.4
1,156,024	+		GFF1149	0.28	-2.0
1,156,032	-		GFF1149	0.29	+1.2
1,156,036	-		GFF1149	0.29	-2.1
1,156,036	-		GFF1149	0.29	-2.8
1,156,037	-		GFF1149	0.29	-1.2
1,156,037	-		GFF1149	0.29	-0.2
1,156,056	-		GFF1149	0.31	-0.8
1,156,125	-		GFF1149	0.37	-1.4
1,156,164	+		GFF1149	0.40	-2.8
1,156,189	+		GFF1149	0.43	-1.4
1,156,194	+		GFF1149	0.43	-2.8
1,156,241	+		GFF1149	0.47	-1.7
1,156,281	-		GFF1149	0.51	-0.5
1,156,293	+		GFF1149	0.52	-1.9
1,156,296	-		GFF1149	0.52	+1.1
1,156,296	-		GFF1149	0.52	-4.9
1,156,301	-		GFF1149	0.53	+1.1
1,156,301	-		GFF1149	0.53	-0.4
1,156,353	+		GFF1149	0.58	-2.7
1,156,394	-		GFF1149	0.61	-1.8
1,156,458	-		GFF1149	0.67	-1.6
1,156,463	-		GFF1149	0.68	-3.5
1,156,467	+		GFF1149	0.68	-2.3
1,156,475	-		GFF1149	0.69	-1.7
1,156,486	+		GFF1149	0.70	-0.8
1,156,530	-		GFF1149	0.74	-3.3
1,156,546	+		GFF1149	0.75	-2.0
1,156,551	+		GFF1149	0.76	+0.1
1,156,552	+		GFF1149	0.76	-2.8
1,156,554	-		GFF1149	0.76	-0.6
1,156,577	+		GFF1149	0.78	-2.2
1,156,669	+		GFF1149	0.86	-2.0
1,156,679	+		GFF1149	0.87	-2.8
1,156,689	-		GFF1149	0.88	-2.6