Strain Fitness in Sphingobium sp. HT1-2 around GFF1123

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,125,413	-		GFF1122	0.27	-0.7
1,125,413	-		GFF1122	0.27	+0.4
1,125,421	-		GFF1122	0.27	-1.1
1,125,422	-		GFF1122	0.27	+0.2
1,125,422	-		GFF1122	0.27	-1.4
1,125,460	+		GFF1122	0.30	-0.4
1,125,468	-		GFF1122	0.31	+2.4
1,125,468	-		GFF1122	0.31	-1.3
1,125,473	-		GFF1122	0.31	+0.1
1,125,474	-		GFF1122	0.31	+0.7
1,125,483	-		GFF1122	0.32	-1.1
1,125,496	-		GFF1122	0.33	+0.6
1,125,501	+		GFF1122	0.33	-0.0
1,125,507	+		GFF1122	0.33	+0.4
1,125,514	-		GFF1122	0.34	-1.0
1,125,536	-		GFF1122	0.36	-1.8
1,125,541	+		GFF1122	0.36	-0.2
1,125,546	+		GFF1122	0.36	-2.4
1,125,551	+		GFF1122	0.37	+0.4
1,125,551	+		GFF1122	0.37	+0.2
1,125,556	+		GFF1122	0.37	-0.0
1,125,559	-		GFF1122	0.37	-1.0
1,125,586	+		GFF1122	0.39	-0.0
1,125,594	-		GFF1122	0.40	+0.9
1,125,614	+		GFF1122	0.41	-0.1
1,125,647	-		GFF1122	0.44	+0.2
1,125,648	-		GFF1122	0.44	-2.4
1,125,648	-		GFF1122	0.44	-1.0
1,125,651	+		GFF1122	0.44	-0.5
1,125,679	+		GFF1122	0.46	+0.3
1,125,687	-		GFF1122	0.47	-1.9
1,125,687	-		GFF1122	0.47	+1.4
1,125,687	-		GFF1122	0.47	-0.9
1,125,716	+		GFF1122	0.49	-0.3
1,125,727	+		GFF1122	0.50	+0.7
1,125,732	+		GFF1122	0.50	-1.0
1,125,738	+		GFF1122	0.50	+0.1
1,125,760	+		GFF1122	0.52	-1.6
1,125,760	+		GFF1122	0.52	+0.3
1,125,768	-		GFF1122	0.53	-1.2
1,125,790	+		GFF1122	0.54	+1.1
1,125,794	+		GFF1122	0.55	-1.7
1,125,798	-		GFF1122	0.55	+1.2
1,125,810	+		GFF1122	0.56	-1.1
1,125,810	-		GFF1122	0.56	-0.1
1,125,818	-		GFF1122	0.56	-0.5
1,125,818	-		GFF1122	0.56	-1.0
1,125,857	+		GFF1122	0.59	+0.7
1,125,863	+		GFF1122	0.60	-0.8
1,125,866	+		GFF1122	0.60	+1.4
1,125,870	-		GFF1122	0.60	+0.7
1,125,878	+		GFF1122	0.61	-0.2
1,125,883	+		GFF1122	0.61	+1.1
1,125,896	-		GFF1122	0.62	-0.5
1,125,909	+		GFF1122	0.63	-0.2
1,125,909	+		GFF1122	0.63	+0.3
1,125,909	+		GFF1122	0.63	+0.7
1,125,909	+		GFF1122	0.63	-1.9
1,125,909	+		GFF1122	0.63	+0.9
1,125,909	+		GFF1122	0.63	-0.1
1,125,909	+		GFF1122	0.63	+0.2
1,125,909	+		GFF1122	0.63	+1.4
1,125,909	+		GFF1122	0.63	+1.0
1,125,914	+		GFF1122	0.63	-0.0
1,125,917	-		GFF1122	0.64	-0.6
1,125,917	-		GFF1122	0.64	-2.5
1,125,917	-		GFF1122	0.64	+0.6
1,125,917	-		GFF1122	0.64	+0.2
1,125,917	-		GFF1122	0.64	-1.7
1,125,917	-		GFF1122	0.64	+0.8
1,125,917	-		GFF1122	0.64	-0.0
1,125,921	-		GFF1122	0.64	-1.0
1,125,927	-		GFF1122	0.64	-0.0
1,125,927	-		GFF1122	0.64	-1.1
1,125,927	-		GFF1122	0.64	+0.3
1,125,952	-		GFF1122	0.66	-1.3
1,125,967	+		GFF1122	0.67	+1.2
1,125,975	-		GFF1122	0.68	-1.4
1,125,979	+		GFF1122	0.68	+0.3
1,125,984	+		GFF1122	0.69	-0.6
1,125,987	-		GFF1122	0.69	+0.1
1,125,996	+		GFF1122	0.69	+1.8
1,126,001	+		GFF1122	0.70	-0.3
1,126,007	+		GFF1122	0.70	+0.4
1,126,009	-		GFF1122	0.70	+1.1
1,126,009	-		GFF1122	0.70	-1.3
1,126,014	-		GFF1122	0.71	+0.3
1,126,147	+		GFF1122	0.80	+0.7
1,126,152	-		GFF1122	0.81	+1.3
1,126,152	-		GFF1122	0.81	-0.0
1,126,152	-		GFF1122	0.81	-1.6
1,126,152	-		GFF1122	0.81	-1.8
1,126,155	+		GFF1122	0.81	-0.2
1,126,160	-		GFF1122	0.81	+0.2
1,126,163	-		GFF1122	0.82	-1.1
1,126,165	-		GFF1122	0.82	+0.9
1,126,165	-		GFF1122	0.82	+0.4
1,126,165	-		GFF1122	0.82	+0.4
1,126,180	+		GFF1122	0.83	+0.8
1,126,180	-		GFF1122	0.83	+0.1
1,126,188	-		GFF1122	0.83	-0.7
1,126,188	-		GFF1122	0.83	-0.6
1,126,188	-		GFF1122	0.83	-0.3
1,126,216	-		GFF1122	0.86	-1.7
1,126,226	+		GFF1122	0.86	-1.0
1,126,237	+		GFF1122	0.87	-2.5
1,126,273	-		GFF1122	0.90	-0.2
1,126,292	-				-0.8
1,126,294	+				+0.6
1,126,296	-				+0.4
1,126,302	-				-0.0
1,126,302	-				-0.5
1,126,309	+				+0.4
1,126,345	+				-0.6
1,126,362	-				-0.8
1,126,362	-				+1.2
1,126,362	-				+0.2
1,126,367	-				+0.0
1,126,367	-				-0.0
1,126,385	-				-0.1
1,126,385	-				-1.2
1,126,406	-				-0.2
1,126,413	+				+1.4
1,126,413	+				-0.3
1,126,413	+				+0.1
1,126,415	-				+0.9
1,126,422	+				-0.6
1,126,432	+				+0.7
1,126,436	+				+0.2
1,126,441	+				-1.5
1,126,441	+				+1.2
1,126,441	+				-0.0
1,126,449	-				+0.8
1,126,453	-				+0.3
1,126,456	+				-1.6
1,126,499	+		GFF1123	0.13	-0.3
1,126,499	+		GFF1123	0.13	+0.5
1,126,499	+		GFF1123	0.13	+1.6
1,126,504	+		GFF1123	0.13	+0.9
1,126,507	-		GFF1123	0.14	-0.2
1,126,539	+		GFF1123	0.18	+0.4
1,126,539	-		GFF1123	0.18	+1.5
1,126,539	-		GFF1123	0.18	-0.8
1,126,539	-		GFF1123	0.18	-0.8
1,126,539	-		GFF1123	0.18	-2.7
1,126,539	-		GFF1123	0.18	+0.3
1,126,545	+		GFF1123	0.19	-0.3
1,126,545	+		GFF1123	0.19	+0.3
1,126,545	+		GFF1123	0.19	+0.1
1,126,553	-		GFF1123	0.20	+0.7
1,126,555	+		GFF1123	0.21	-1.0
1,126,578	+		GFF1123	0.24	-1.8
1,126,578	+		GFF1123	0.24	-1.1
1,126,584	-		GFF1123	0.25	-0.8
1,126,584	-		GFF1123	0.25	-0.3
1,126,600	-		GFF1123	0.27	-0.2
1,126,604	+		GFF1123	0.27	+0.3
1,126,610	-		GFF1123	0.28	+1.2
1,126,626	+		GFF1123	0.31	-0.3
1,126,628	+		GFF1123	0.31	+1.2
1,126,631	-		GFF1123	0.31	-0.3
1,126,641	+		GFF1123	0.33	-1.0
1,126,664	+		GFF1123	0.36	+0.7
1,126,672	-		GFF1123	0.37	+1.6
1,126,697	+		GFF1123	0.41	+0.8
1,126,697	+		GFF1123	0.41	+0.4
1,126,697	+		GFF1123	0.41	-0.2
1,126,697	+		GFF1123	0.41	-2.5
1,126,697	+		GFF1123	0.41	-0.3
1,126,705	-		GFF1123	0.42	+1.3
1,126,705	-		GFF1123	0.42	+0.8
1,126,705	-		GFF1123	0.42	+0.2
1,126,705	-		GFF1123	0.42	-1.1
1,126,706	+		GFF1123	0.42	-1.4
1,126,714	-		GFF1123	0.43	+1.2
1,126,727	-		GFF1123	0.45	-1.1
1,126,736	-		GFF1123	0.46	-0.1
1,126,736	-		GFF1123	0.46	-1.9
1,126,737	-		GFF1123	0.46	+0.3
1,126,746	+		GFF1123	0.47	+0.6
1,126,748	+		GFF1123	0.48	-0.3
1,126,782	-		GFF1123	0.52	-1.5
1,126,797	+		GFF1123	0.55	+0.2
1,126,797	+		GFF1123	0.55	+0.9
1,126,805	-		GFF1123	0.56	+1.2
1,126,809	+		GFF1123	0.56	-1.1
1,126,825	+		GFF1123	0.59	+0.7
1,126,827	-		GFF1123	0.59	+0.5
1,126,833	+		GFF1123	0.60	-0.1
1,126,833	+		GFF1123	0.60	+0.6
1,126,833	+		GFF1123	0.60	-0.7
1,126,833	+		GFF1123	0.60	+1.4
1,126,833	+		GFF1123	0.60	-0.7
1,126,833	-		GFF1123	0.60	-1.5
1,126,836	-		GFF1123	0.60	+1.0
1,126,841	-		GFF1123	0.61	-1.2
1,126,841	-		GFF1123	0.61	+0.3
1,126,860	+		GFF1123	0.63	+0.1
1,126,862	+		GFF1123	0.64	-0.5
1,126,862	+		GFF1123	0.64	-1.5
1,126,867	+		GFF1123	0.64	+1.2
1,126,868	-		GFF1123	0.65	-0.2
1,126,891	-		GFF1123	0.68	-0.5
1,126,909	-		GFF1123	0.70	-0.4
1,126,916	+		GFF1123	0.71	-0.1
1,126,934	+		GFF1123	0.74	-0.7
1,126,938	+		GFF1123	0.74	+1.1
1,126,943	+		GFF1123	0.75	+0.9
1,126,946	-		GFF1123	0.76	-2.2
1,126,946	-		GFF1123	0.76	-1.0
1,126,948	+		GFF1123	0.76	-0.5
1,126,948	+		GFF1123	0.76	+0.9
1,126,948	+		GFF1123	0.76	+0.2
1,126,954	+		GFF1123	0.77	-1.4
1,126,956	-		GFF1123	0.77	-0.6
1,126,956	-		GFF1123	0.77	+0.9
1,126,956	-		GFF1123	0.77	-0.2
1,127,021	+		GFF1123	0.86	+1.2
1,127,030	+		GFF1123	0.87	-0.3
1,127,033	-		GFF1123	0.88	+0.1
1,127,035	+		GFF1123	0.88	+0.4
1,127,038	-		GFF1123	0.88	-0.2
1,127,050	+				-0.7
1,127,050	+				-2.5
1,127,058	-				-0.3
1,127,058	-				+0.9
1,127,058	-				-1.3
1,127,065	-				-0.6
1,127,085	+				-0.7
1,127,088	-				+0.9
1,127,088	-				+0.1
1,127,090	+				+0.7
1,127,090	+				+0.9
1,127,090	+				+0.4
1,127,090	+				-0.1
1,127,090	+				-2.1
1,127,093	-				-0.5
1,127,095	+				+0.5
1,127,095	+				+0.9
1,127,095	+				+0.2
1,127,098	-				+1.1
1,127,098	-				-1.3
1,127,098	-				+0.1
1,127,098	-				+0.2
1,127,111	-				+0.3
1,127,121	-				+0.1
1,127,122	-				+0.4
1,127,122	-				-0.7
1,127,122	-				-1.4
1,127,137	+				-0.7
1,127,145	-				-0.3
1,127,145	-				+1.2
1,127,194	-				-1.1
1,127,202	+				-0.3
1,127,211	-				-0.7
1,127,213	-				-1.1
1,127,216	+				-1.2
1,127,224	-				-1.6
1,127,249	+				+1.4
1,127,256	+				+0.6
1,127,256	+				+0.3
1,127,256	+				+1.6
1,127,264	-				-0.1
1,127,264	-				-0.9
1,127,264	-				-1.3
1,127,264	-				-1.7
1,127,270	+				-1.1
1,127,270	+				+1.0
1,127,274	+				-1.4
1,127,278	-				-1.2
1,127,278	-				+0.3
1,127,296	+				-0.3
1,127,302	+				-1.2
1,127,302	+				-0.8
1,127,302	+				+0.3
1,127,310	-				-2.1
1,127,310	-				+0.8
1,127,330	+				-0.7
1,127,330	+				-0.0
1,127,330	+				-0.7
1,127,330	+				-1.8
1,127,330	+				+1.2
1,127,330	+				-1.3
1,127,330	+				-0.1
1,127,330	+				-0.3
1,127,330	+				+0.6
1,127,330	+				-0.3
1,127,330	+				-0.8
1,127,330	+				-0.0
1,127,330	+				-0.2
1,127,330	+				+0.9
1,127,330	+				-0.0
1,127,330	+				+1.6
1,127,330	+				-1.1
1,127,330	+				-1.8
1,127,330	+				-1.3
1,127,338	-				+0.6
1,127,338	-				+0.4
1,127,338	-				+1.3
1,127,338	-				-0.3
1,127,338	-				+1.0
1,127,338	-				-1.3
1,127,338	-				-0.2
1,127,338	-				-0.6
1,127,338	-				+0.3
1,127,338	-				+0.7
1,127,338	-				-0.6
1,127,338	-				+1.0
1,127,338	-				-0.6
1,127,338	-				-1.4
1,127,340	+				-0.8
1,127,340	+				-0.0
1,127,348	-		GFF1124	0.10	-1.1
1,127,348	-		GFF1124	0.10	+1.2
1,127,348	-		GFF1124	0.10	+0.7
1,127,358	-		GFF1124	0.11	-2.1
1,127,366	-		GFF1124	0.11	+0.4
1,127,379	+		GFF1124	0.12	+1.5
1,127,389	+		GFF1124	0.12	-2.0
1,127,389	+		GFF1124	0.12	+1.4
1,127,389	+		GFF1124	0.12	-2.8
1,127,389	+		GFF1124	0.12	-1.8
1,127,389	+		GFF1124	0.12	+0.9
1,127,391	-		GFF1124	0.12	-0.3
1,127,397	-		GFF1124	0.13	+0.3
1,127,397	-		GFF1124	0.13	-1.7
1,127,397	-		GFF1124	0.13	-0.7
1,127,397	-		GFF1124	0.13	-1.1
1,127,397	-		GFF1124	0.13	-0.5
1,127,399	+		GFF1124	0.13	-0.2
1,127,407	-		GFF1124	0.13	+1.1
1,127,453	+		GFF1124	0.16	-0.7
1,127,453	+		GFF1124	0.16	-0.8
1,127,453	+		GFF1124	0.16	-0.2
1,127,453	+		GFF1124	0.16	+1.1
1,127,453	+		GFF1124	0.16	-0.6
1,127,453	+		GFF1124	0.16	+0.5
1,127,461	-		GFF1124	0.16	+1.1
1,127,461	-		GFF1124	0.16	+0.4
1,127,461	-		GFF1124	0.16	-0.6
1,127,461	-		GFF1124	0.16	-0.0
1,127,461	-		GFF1124	0.16	-1.5
1,127,461	-		GFF1124	0.16	+0.8
1,127,461	-		GFF1124	0.16	-1.7
1,127,465	+		GFF1124	0.16	-1.3
1,127,466	-		GFF1124	0.16	-0.3
1,127,471	-		GFF1124	0.17	+0.5
1,127,471	-		GFF1124	0.17	-0.1
1,127,473	-		GFF1124	0.17	+0.3
1,127,475	+		GFF1124	0.17	-0.9
1,127,476	-		GFF1124	0.17	+0.4
1,127,485	+		GFF1124	0.17	+0.7
1,127,490	+		GFF1124	0.18	+0.2
1,127,493	-		GFF1124	0.18	+0.5
1,127,493	-		GFF1124	0.18	-1.8
1,127,493	-		GFF1124	0.18	-0.5
1,127,496	+		GFF1124	0.18	-0.5
1,127,498	-		GFF1124	0.18	-0.3
1,127,498	-		GFF1124	0.18	-1.7
1,127,533	-		GFF1124	0.20	-2.1
1,127,570	+		GFF1124	0.22	-1.7
1,127,570	+		GFF1124	0.22	-0.8
1,127,578	-		GFF1124	0.22	+0.8
1,127,579	-		GFF1124	0.22	+1.0
1,127,580	+		GFF1124	0.22	-0.0
1,127,596	+		GFF1124	0.23	-0.5
1,127,604	-		GFF1124	0.24	-0.9
1,127,637	+		GFF1124	0.25	-0.8
1,127,637	+		GFF1124	0.25	+0.7
1,127,638	+		GFF1124	0.25	-0.0
1,127,645	-		GFF1124	0.26	-1.1
1,127,645	-		GFF1124	0.26	+0.7
1,127,645	-		GFF1124	0.26	-1.6
1,127,646	-		GFF1124	0.26	-1.4
1,127,651	+		GFF1124	0.26	-1.1
1,127,651	+		GFF1124	0.26	-1.3
1,127,653	+		GFF1124	0.26	-0.3
1,127,659	-		GFF1124	0.27	+0.4
1,127,704	-		GFF1124	0.29	-0.6
1,127,704	-		GFF1124	0.29	-1.8
1,127,704	-		GFF1124	0.29	-1.5
1,127,743	-		GFF1124	0.31	-0.3
1,127,791	+		GFF1124	0.34	+0.2
1,127,799	-		GFF1124	0.34	-0.3
1,127,799	-		GFF1124	0.34	+1.3
1,127,809	-		GFF1124	0.34	+0.2
1,127,826	-		GFF1124	0.35	+0.2
1,127,838	+		GFF1124	0.36	+0.4
1,127,846	-		GFF1124	0.36	-0.3
1,127,853	-		GFF1124	0.37	-1.5
1,127,853	-		GFF1124	0.37	+0.2
1,127,853	-		GFF1124	0.37	-0.3
1,127,853	-		GFF1124	0.37	-0.3
1,127,853	-		GFF1124	0.37	+0.4
1,127,853	-		GFF1124	0.37	+0.4
1,127,863	+		GFF1124	0.37	+0.2
1,127,863	-		GFF1124	0.37	-0.4
1,127,932	+		GFF1124	0.41	+0.1
1,127,940	-		GFF1124	0.41	-0.3
1,127,940	-		GFF1124	0.41	-0.8
1,127,950	+		GFF1124	0.42	-0.1
1,127,950	+		GFF1124	0.42	+0.6
1,127,955	+		GFF1124	0.42	-0.7
1,127,964	-		GFF1124	0.43	-1.8
1,127,973	+		GFF1124	0.43	+0.8
1,127,973	+		GFF1124	0.43	-0.6
1,127,981	-		GFF1124	0.44	+0.2
1,127,982	+		GFF1124	0.44	-0.3
1,127,989	+		GFF1124	0.44	+0.3
1,128,004	-		GFF1124	0.45	+0.9
1,128,006	+		GFF1124	0.45	+0.3
1,128,014	-		GFF1124	0.45	-1.1
1,128,044	+		GFF1124	0.47	+0.1
1,128,044	+		GFF1124	0.47	+0.3
1,128,058	-		GFF1124	0.48	-0.3
1,128,063	+		GFF1124	0.48	-2.2
1,128,086	+		GFF1124	0.49	-1.5
1,128,094	-		GFF1124	0.50	-0.9
1,128,094	-		GFF1124	0.50	-0.7
1,128,114	+		GFF1124	0.51	+0.7