Strain Fitness in Sphingobium sp. HT1-2 around GFF111

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
101,753	-				-1.4
101,765	+				+1.0
101,765	-				+0.4
101,779	+				+0.2
101,787	-				-0.9
101,800	+				-0.1
101,800	+				+0.2
101,800	+				+1.0
101,805	+				+1.4
101,808	-				+0.9
101,831	+				-0.1
101,831	+				+0.6
101,832	+				-0.5
101,837	+				-1.8
101,839	-				-0.1
101,851	-				+0.3
101,866	+				+0.2
101,871	+				-0.9
101,871	+				-0.1
101,874	-				-0.6
101,889	+				+0.1
101,889	+				+0.4
101,889	+				-0.6
101,889	+				-2.1
101,889	+				-0.9
101,897	-		GFF110	0.10	-0.9
101,897	-		GFF110	0.10	-1.8
101,897	-		GFF110	0.10	-0.8
101,908	+		GFF110	0.12	-0.5
101,923	+		GFF110	0.14	-1.1
101,923	+		GFF110	0.14	+0.1
101,923	+		GFF110	0.14	-0.2
101,923	+		GFF110	0.14	-2.0
101,923	+		GFF110	0.14	+0.2
101,923	+		GFF110	0.14	+0.3
101,923	+		GFF110	0.14	-1.1
101,926	-		GFF110	0.14	-1.4
101,926	-		GFF110	0.14	-0.7
101,926	-		GFF110	0.14	-0.8
101,926	-		GFF110	0.14	-1.2
101,928	+		GFF110	0.14	-0.1
101,931	-		GFF110	0.15	-1.5
101,931	-		GFF110	0.15	+1.2
101,935	+		GFF110	0.15	-1.0
101,936	-		GFF110	0.15	+1.1
101,936	-		GFF110	0.15	-0.4
101,938	-		GFF110	0.15	+0.4
101,960	+		GFF110	0.18	-2.2
101,975	-		GFF110	0.20	+0.5
101,989	-		GFF110	0.22	-1.4
101,990	-		GFF110	0.22	+0.4
101,995	-		GFF110	0.23	-0.0
101,999	-		GFF110	0.23	-0.5
102,030	-		GFF110	0.27	-1.5
102,056	-		GFF110	0.30	-1.2
102,058	+		GFF110	0.30	-0.4
102,076	+		GFF110	0.33	+0.4
102,076	+		GFF110	0.33	+1.1
102,102	-		GFF110	0.36	-1.2
102,107	+		GFF110	0.36	-1.1
102,146	+		GFF110	0.41	-0.2
102,146	+		GFF110	0.41	-1.7
102,160	+		GFF110	0.43	-1.9
102,186	+		GFF110	0.46	-2.2
102,191	+		GFF110	0.47	-2.1
102,194	-		GFF110	0.47	-1.0
102,194	-		GFF110	0.47	+0.8
102,196	+		GFF110	0.48	-0.5
102,199	-		GFF110	0.48	+1.9
102,204	-		GFF110	0.49	+0.2
102,232	+		GFF110	0.52	+1.0
102,232	+		GFF110	0.52	-2.7
102,232	+		GFF110	0.52	+1.4
102,232	+		GFF110	0.52	+0.6
102,232	+		GFF110	0.52	+1.5
102,235	-		GFF110	0.52	-0.7
102,240	-		GFF110	0.53	-0.9
102,240	-		GFF110	0.53	+0.1
102,240	-		GFF110	0.53	-0.6
102,240	-		GFF110	0.53	+0.8
102,240	-		GFF110	0.53	+0.9
102,240	-		GFF110	0.53	+1.1
102,240	-		GFF110	0.53	-0.4
102,240	-		GFF110	0.53	+0.3
102,240	-		GFF110	0.53	+1.2
102,240	-		GFF110	0.53	+0.6
102,245	-		GFF110	0.54	+1.1
102,256	+		GFF110	0.55	-0.7
102,284	-		GFF110	0.58	-1.0
102,291	-		GFF110	0.59	-0.6
102,304	+		GFF110	0.61	-0.3
102,312	-		GFF110	0.62	-1.5
102,322	+		GFF110	0.63	-0.7
102,322	+		GFF110	0.63	+0.6
102,322	+		GFF110	0.63	-1.7
102,322	+		GFF110	0.63	-0.1
102,322	+		GFF110	0.63	-0.3
102,322	+		GFF110	0.63	-0.7
102,330	-		GFF110	0.64	-1.0
102,330	-		GFF110	0.64	-0.1
102,330	-		GFF110	0.64	-0.4
102,330	-		GFF110	0.64	+0.8
102,330	-		GFF110	0.64	+0.6
102,340	-		GFF110	0.65	+1.3
102,347	-		GFF110	0.66	+0.5
102,347	-		GFF110	0.66	-0.1
102,351	+		GFF110	0.67	+1.0
102,365	+		GFF110	0.69	+0.1
102,372	+		GFF110	0.69	+0.3
102,425	-		GFF110	0.76	-1.1
102,430	-		GFF110	0.77	+0.8
102,432	+		GFF110	0.77	+1.0
102,435	+		GFF110	0.77	-0.2
102,440	+		GFF110	0.78	+0.4
102,448	-		GFF110	0.79	+0.4
102,459	+		GFF110	0.80	+0.3
102,491	+		GFF110	0.84	+0.7
102,491	+		GFF110	0.84	+1.3
102,499	-		GFF110	0.85	+0.2
102,499	-		GFF110	0.85	-0.5
102,499	-		GFF110	0.85	-1.0
102,503	+		GFF110	0.86	-0.2
102,508	+		GFF110	0.86	-0.8
102,508	+		GFF110	0.86	-1.4
102,508	+		GFF110	0.86	+0.3
102,508	+		GFF110	0.86	+0.5
102,511	-		GFF110	0.87	+0.2
102,513	+		GFF110	0.87	+0.3
102,515	+		GFF110	0.87	-0.1
102,516	-		GFF110	0.87	+0.7
102,516	-		GFF110	0.87	+0.5
102,516	-		GFF110	0.87	+0.8
102,516	-		GFF110	0.87	+0.7
102,516	-		GFF110	0.87	-1.0
102,516	-		GFF110	0.87	-1.2
102,516	-		GFF110	0.87	+0.3
102,521	-		GFF110	0.88	-2.0
102,521	-		GFF110	0.88	-0.2
102,521	-		GFF110	0.88	+0.3
102,523	-		GFF110	0.88	+0.2
102,528	+		GFF110	0.89	+0.2
102,553	+				-0.1
102,558	+				+1.2
102,561	-				-1.1
102,590	+				-1.1
102,598	-				-1.2
102,598	-				-0.4
102,604	+				+1.0
102,607	-				+0.8
102,610	+				-0.6
102,626	+				-1.1
102,628	+				-0.5
102,647	-				-0.2
102,647	-				+0.6
102,662	-				-1.0
102,700	+				-0.4
102,700	+				-0.9
102,705	+				-0.5
102,708	-				-0.1
102,708	-				+1.8
102,710	+				+1.6
102,710	+				-1.2
102,713	-				-0.3
102,713	-				-1.4
102,713	-				-1.0
102,715	+				+0.7
102,715	+				-1.5
102,718	-				+0.6
102,720	+				+0.9
102,720	+				-0.7
102,720	+				-1.8
102,720	+				+0.8
102,720	+				-0.3
102,720	+				-0.1
102,720	+				-0.9
102,725	+				-1.8
102,725	+				-1.8
102,728	-				+0.2
102,728	-				-1.9
102,728	-				+0.6
102,728	-				+0.4
102,728	-				+0.4
102,728	-				+0.3
102,728	-				+0.7
102,733	-				+1.3
102,738	+				-0.8
102,753	+				-0.4
102,761	-				-0.8
102,761	-				-2.0
102,775	+		GFF111	0.11	-0.8
102,797	+		GFF111	0.15	-0.3
102,809	+		GFF111	0.17	+1.0
102,822	-		GFF111	0.19	+0.8
102,855	+		GFF111	0.25	+0.2
102,863	-		GFF111	0.27	+0.0
102,884	-		GFF111	0.31	-1.6
102,909	+		GFF111	0.35	-1.2
102,909	+		GFF111	0.35	+0.1
102,917	-		GFF111	0.37	-0.1
102,946	+		GFF111	0.42	-1.1
102,946	-		GFF111	0.42	-1.4
102,952	-		GFF111	0.43	+0.4
102,952	-		GFF111	0.43	+0.5
102,954	-		GFF111	0.44	+0.1
102,987	-		GFF111	0.50	+1.3
103,000	-		GFF111	0.52	-1.2
103,019	+		GFF111	0.56	-0.0
103,019	+		GFF111	0.56	-0.1
103,024	+		GFF111	0.57	-0.8
103,037	+		GFF111	0.59	-0.4
103,058	-		GFF111	0.63	-0.8
103,063	+		GFF111	0.64	+1.6
103,071	-		GFF111	0.65	-1.2
103,086	+		GFF111	0.68	-1.3
103,141	+		GFF111	0.78	-1.7
103,141	+		GFF111	0.78	+0.3
103,146	+		GFF111	0.79	-1.1
103,149	-		GFF111	0.80	-0.2
103,154	-		GFF111	0.80	+0.8
103,176	+		GFF111	0.85	-2.6
103,176	+		GFF111	0.85	-2.4
103,181	+		GFF111	0.85	-0.2
103,184	-		GFF111	0.86	-0.8
103,184	-		GFF111	0.86	-0.2
103,184	-		GFF111	0.86	-1.8
103,185	+		GFF111	0.86	-0.9
103,193	-		GFF111	0.88	+0.4
103,195	+		GFF111	0.88	-0.2
103,203	-		GFF111	0.90	-1.1
103,207	+				-0.3
103,220	-				-1.6
103,222	+				+0.5
103,222	+				-1.2
103,230	-				-0.1
103,230	-				+0.9
103,230	-				+0.1
103,235	+				-1.9
103,259	+				+0.9
103,293	+				-0.0
103,312	+				+0.5
103,312	+				+0.3
103,312	+				-0.8
103,312	+				-0.6
103,312	+				+1.0
103,312	+				-1.8
103,312	+				-1.8
103,312	+				+1.1
103,312	+				+0.5
103,343	+				+0.8
103,343	+				-0.2
103,343	+				-0.2
103,343	+				-1.4
103,356	+				+0.4
103,385	+				-1.1
104,009	+				+1.3
104,014	+				+0.4
104,046	+				+0.8
104,055	+				-1.1
104,056	+				+0.9
104,056	+				-0.3
104,062	-				-0.2
104,064	+				-0.7
104,072	-				-0.8
104,072	-				-1.5
104,074	+				-2.2
104,074	+				-0.3
104,074	+				-1.0
104,074	+				-0.3
104,082	-				+0.1
104,084	+				-1.5
104,084	+				-1.5
104,097	-				-0.1
104,114	-				-1.2
104,123	+				+0.4
104,125	+				+0.3
104,125	+				+0.3
104,131	-				-0.9
104,131	-				-0.4
104,133	-				-1.5
104,141	-				+1.1
104,163	+		GFF113	0.11	-1.6
104,164	-		GFF113	0.12	+1.2
104,164	-		GFF113	0.12	+0.8
104,205	-		GFF113	0.15	-1.6
104,236	-		GFF113	0.18	+1.1