Strain Fitness in Sphingobium sp. HT1-2 around GFF1039

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,040,664	-		GFF1038	0.47	-0.7
1,040,666	+		GFF1038	0.47	+1.3
1,040,666	+		GFF1038	0.47	-1.1
1,040,674	-		GFF1038	0.47	-1.6
1,040,705	-		GFF1038	0.49	+0.5
1,040,710	+		GFF1038	0.50	+0.0
1,040,710	+		GFF1038	0.50	-1.1
1,040,710	+		GFF1038	0.50	-0.6
1,040,710	+		GFF1038	0.50	+0.2
1,040,715	+		GFF1038	0.50	-1.1
1,040,717	-		GFF1038	0.50	+0.1
1,040,717	-		GFF1038	0.50	-2.3
1,040,717	-		GFF1038	0.50	+0.2
1,040,718	-		GFF1038	0.50	-0.8
1,040,724	+		GFF1038	0.50	+0.6
1,040,727	+		GFF1038	0.51	-1.4
1,040,727	+		GFF1038	0.51	-0.4
1,040,737	+		GFF1038	0.51	-1.0
1,040,742	+		GFF1038	0.52	+0.0
1,040,745	-		GFF1038	0.52	-0.7
1,040,745	-		GFF1038	0.52	-0.3
1,040,750	-		GFF1038	0.52	+0.0
1,040,777	+		GFF1038	0.54	-1.8
1,040,777	+		GFF1038	0.54	-1.1
1,040,777	+		GFF1038	0.54	-1.0
1,040,778	+		GFF1038	0.54	-0.8
1,040,785	-		GFF1038	0.54	-0.2
1,040,785	-		GFF1038	0.54	+0.6
1,040,785	-		GFF1038	0.54	-0.6
1,040,789	+		GFF1038	0.54	-1.4
1,040,797	+		GFF1038	0.55	-1.9
1,040,797	-		GFF1038	0.55	-0.4
1,040,831	+		GFF1038	0.57	-2.4
1,040,868	-		GFF1038	0.59	-1.1
1,040,873	+		GFF1038	0.59	-0.7
1,040,881	-		GFF1038	0.60	-0.4
1,040,888	-		GFF1038	0.60	-0.4
1,040,892	+		GFF1038	0.61	-1.9
1,040,892	+		GFF1038	0.61	-1.0
1,040,892	+		GFF1038	0.61	-0.1
1,040,892	+		GFF1038	0.61	+0.3
1,040,892	+		GFF1038	0.61	-1.5
1,040,892	+		GFF1038	0.61	+1.1
1,040,892	+		GFF1038	0.61	-2.0
1,040,892	+		GFF1038	0.61	-0.1
1,040,897	+		GFF1038	0.61	+0.5
1,040,900	-		GFF1038	0.61	+0.4
1,040,900	-		GFF1038	0.61	+1.2
1,040,900	-		GFF1038	0.61	-3.1
1,040,910	+		GFF1038	0.62	-0.2
1,040,925	+		GFF1038	0.63	-0.6
1,040,925	+		GFF1038	0.63	-1.4
1,040,925	+		GFF1038	0.63	-0.2
1,040,925	+		GFF1038	0.63	+0.2
1,040,959	-		GFF1038	0.65	+0.6
1,040,960	-		GFF1038	0.65	+0.9
1,040,969	+		GFF1038	0.65	+0.2
1,041,026	-		GFF1038	0.69	-1.6
1,041,030	+		GFF1038	0.69	-0.2
1,041,030	+		GFF1038	0.69	+1.5
1,041,031	+		GFF1038	0.69	-0.7
1,041,045	-		GFF1038	0.70	-1.6
1,041,054	+		GFF1038	0.70	-0.6
1,041,054	+		GFF1038	0.70	-0.1
1,041,062	-		GFF1038	0.71	-0.8
1,041,062	-		GFF1038	0.71	-0.5
1,041,064	-		GFF1038	0.71	-2.1
1,041,066	+		GFF1038	0.71	-0.5
1,041,068	+		GFF1038	0.71	-0.6
1,041,103	+		GFF1038	0.73	+0.9
1,041,126	+		GFF1038	0.75	+0.7
1,041,126	+		GFF1038	0.75	-0.8
1,041,126	+		GFF1038	0.75	-0.4
1,041,126	+		GFF1038	0.75	-1.2
1,041,126	+		GFF1038	0.75	+0.8
1,041,127	+		GFF1038	0.75	+0.0
1,041,133	+		GFF1038	0.75	-0.2
1,041,134	-		GFF1038	0.75	+0.7
1,041,134	-		GFF1038	0.75	+0.4
1,041,134	-		GFF1038	0.75	-1.2
1,041,134	-		GFF1038	0.75	-0.6
1,041,141	-		GFF1038	0.75	-0.3
1,041,141	-		GFF1038	0.75	+0.9
1,041,158	+		GFF1038	0.76	-0.0
1,041,158	+		GFF1038	0.76	+0.4
1,041,165	+		GFF1038	0.77	-0.2
1,041,167	+		GFF1038	0.77	-1.7
1,041,212	+		GFF1038	0.80	-0.2
1,041,212	+		GFF1038	0.80	-0.2
1,041,212	+		GFF1038	0.80	+0.2
1,041,213	+		GFF1038	0.80	-1.5
1,041,269	+		GFF1038	0.83	-0.4
1,041,269	+		GFF1038	0.83	-0.7
1,041,275	-		GFF1038	0.84	-0.5
1,041,292	-		GFF1038	0.85	-0.9
1,041,334	+		GFF1038	0.87	+0.9
1,041,347	-		GFF1038	0.88	+0.6
1,041,347	-		GFF1038	0.88	+0.4
1,041,364	+		GFF1038	0.89	-0.8
1,041,365	+		GFF1038	0.89	+0.7
1,041,370	-		GFF1038	0.89	+0.6
1,041,387	-				-0.7
1,041,399	-				+0.6
1,041,408	+				+0.3
1,041,453	+				+2.4
1,041,453	+				+1.7
1,041,453	+				+0.2
1,041,453	+				-0.7
1,041,453	+				+1.4
1,041,453	+				-0.8
1,041,453	+				-1.1
1,041,453	+				-1.8
1,041,453	+				+1.5
1,041,453	+				+0.0
1,041,453	+				+1.9
1,041,453	+				+0.3
1,041,453	+				-0.0
1,041,454	+				+0.7
1,041,461	-				-0.7
1,041,461	-				+0.0
1,041,461	-				+0.2
1,041,461	-				+0.9
1,041,461	-				-0.6
1,041,461	-				-1.4
1,041,461	-				-0.3
1,041,461	-				-0.9
1,041,461	-				+1.0
1,041,461	-				-0.6
1,041,461	-				-0.6
1,041,461	-				-1.0
1,041,461	-				-0.9
1,041,475	-				-1.3
1,041,518	+				-2.6
1,041,521	-				-0.4
1,041,544	-				+1.3
1,041,552	-				-0.1
1,041,562	-				+1.1
1,041,627	+				+0.1
1,041,637	-				-1.1
1,041,671	+				+0.5
1,041,671	+				+1.7
1,041,671	+				-1.1
1,041,677	+				-0.8
1,041,677	+				+0.7
1,041,677	+				+0.3
1,041,679	+				+0.5
1,041,679	-				+0.0
1,041,679	-				-1.5
1,041,679	-				+0.7
1,041,685	-				-1.0
1,041,685	-				+0.1
1,041,688	+				+0.8
1,041,693	+				-2.4
1,041,696	-				+0.6
1,041,696	-				-0.9
1,041,696	-				-0.7
1,041,696	-				-1.6
1,041,701	-				+0.1
1,041,701	-				+0.9
1,041,701	-				+0.2
1,041,701	-				-0.3
1,041,701	-				-1.3
1,041,701	-				+0.8
1,041,701	-				+0.7
1,041,701	-				+0.4
1,041,723	+				-0.3
1,041,728	+				-1.4
1,041,733	+				-2.1
1,041,733	+				-1.4
1,041,733	+				+0.1
1,041,736	-				-1.0
1,041,741	+				-1.6
1,041,741	-				-2.1
1,041,741	-				-2.1
1,041,741	-				-0.3
1,041,741	-				-0.6
1,041,754	-				+0.9
1,041,754	-				-0.8
1,041,758	+				-1.1
1,041,766	-				+0.1
1,041,766	-				-0.5
1,041,766	-				-1.3
1,041,766	-				-0.7
1,041,773	+				+0.2
1,041,773	+				-0.9
1,041,776	-				-0.1
1,041,781	+				-0.9
1,041,786	+				-1.6
1,041,786	+				-0.3
1,041,789	-				+0.6
1,041,789	-				+1.3
1,041,791	+				-0.2
1,041,791	+				-1.7
1,041,791	+				-1.0
1,041,791	+				-0.9
1,041,791	+				+0.3
1,041,799	-				+0.9
1,041,799	-				+0.5
1,041,799	-				-1.0
1,041,799	-				-0.1
1,041,799	-				-0.2
1,041,827	+				-0.8
1,041,835	-				+0.2
1,041,835	-				-2.2
1,041,848	+				-0.2
1,041,848	+				+0.4
1,041,848	+				-1.4
1,041,848	+				+0.5
1,041,848	+				+1.1
1,041,856	-				+0.2
1,041,856	-				-0.1
1,041,856	-				+0.6
1,041,856	-				+0.2
1,041,856	-				-0.3
1,041,856	-				+2.1
1,041,864	+				+0.2
1,041,864	+				-0.7
1,041,864	+				+0.6
1,041,864	+				-0.4
1,041,869	+				+1.0
1,041,872	-				+0.8
1,041,872	-				+0.4
1,041,872	-				-3.2
1,041,877	+				+0.2
1,041,910	+		GFF1039	0.10	+1.1
1,041,950	-		GFF1039	0.12	+0.0
1,041,970	+		GFF1039	0.13	-0.1
1,042,009	+		GFF1039	0.14	-1.6
1,042,015	-		GFF1039	0.14	-1.1
1,042,020	+		GFF1039	0.15	-0.1
1,042,034	-		GFF1039	0.15	+1.9
1,042,056	+		GFF1039	0.16	+0.4
1,042,056	+		GFF1039	0.16	-0.9
1,042,056	+		GFF1039	0.16	+1.8
1,042,056	+		GFF1039	0.16	-0.6
1,042,056	+		GFF1039	0.16	-0.1
1,042,064	-		GFF1039	0.16	-0.3
1,042,123	+		GFF1039	0.19	+1.1
1,042,129	-		GFF1039	0.19	-0.2
1,042,129	-		GFF1039	0.19	-0.8
1,042,129	-		GFF1039	0.19	+1.9
1,042,131	-		GFF1039	0.19	+1.1
1,042,134	+		GFF1039	0.19	-1.5
1,042,136	+		GFF1039	0.19	-1.7
1,042,159	-		GFF1039	0.20	+1.0
1,042,181	+		GFF1039	0.21	-1.0
1,042,224	+		GFF1039	0.22	-0.1
1,042,224	+		GFF1039	0.22	-0.8
1,042,224	+		GFF1039	0.22	-1.5
1,042,224	+		GFF1039	0.22	+1.2
1,042,230	-		GFF1039	0.23	-1.3
1,042,232	-		GFF1039	0.23	-0.0
1,042,243	+		GFF1039	0.23	+0.4
1,042,255	+		GFF1039	0.24	-0.2
1,042,255	+		GFF1039	0.24	+0.7
1,042,255	+		GFF1039	0.24	+0.1
1,042,255	+		GFF1039	0.24	-0.6
1,042,258	-		GFF1039	0.24	-1.4
1,042,258	-		GFF1039	0.24	-0.1
1,042,258	-		GFF1039	0.24	-2.1
1,042,272	+		GFF1039	0.24	-0.1
1,042,283	+		GFF1039	0.25	-1.4
1,042,291	-		GFF1039	0.25	-0.1
1,042,306	+		GFF1039	0.26	+0.7
1,042,314	-		GFF1039	0.26	-0.5
1,042,316	+		GFF1039	0.26	+0.5
1,042,323	+		GFF1039	0.26	+0.2
1,042,326	-		GFF1039	0.26	+0.3
1,042,331	-		GFF1039	0.27	-1.5
1,042,347	+		GFF1039	0.27	-1.3
1,042,353	+		GFF1039	0.27	-0.1
1,042,353	-		GFF1039	0.27	-2.5
1,042,353	-		GFF1039	0.27	-0.8
1,042,360	+		GFF1039	0.28	-1.6
1,042,360	+		GFF1039	0.28	-0.2
1,042,360	+		GFF1039	0.28	+0.6
1,042,368	+		GFF1039	0.28	-0.3
1,042,368	-		GFF1039	0.28	-0.6
1,042,368	-		GFF1039	0.28	-0.1
1,042,427	+		GFF1039	0.30	-0.6
1,042,427	+		GFF1039	0.30	-2.2
1,042,427	+		GFF1039	0.30	+0.3
1,042,427	+		GFF1039	0.30	+1.4
1,042,427	+		GFF1039	0.30	+0.3
1,042,427	+		GFF1039	0.30	+0.2
1,042,433	-		GFF1039	0.31	+1.5
1,042,435	-		GFF1039	0.31	-1.5
1,042,435	-		GFF1039	0.31	+0.9
1,042,435	-		GFF1039	0.31	-1.0
1,042,435	-		GFF1039	0.31	-0.1
1,042,435	-		GFF1039	0.31	-2.1
1,042,435	-		GFF1039	0.31	-0.9
1,042,435	-		GFF1039	0.31	-0.8
1,042,442	+		GFF1039	0.31	-1.0
1,042,448	+		GFF1039	0.31	-1.1
1,042,448	+		GFF1039	0.31	+0.1
1,042,456	-		GFF1039	0.31	+0.1
1,042,456	-		GFF1039	0.31	+0.7
1,042,468	+		GFF1039	0.32	-0.6
1,042,476	-		GFF1039	0.32	-1.8
1,042,481	-		GFF1039	0.32	-0.1
1,042,496	-		GFF1039	0.33	-0.9
1,042,519	-		GFF1039	0.34	-0.2
1,042,572	+		GFF1039	0.36	+0.3
1,042,577	+		GFF1039	0.36	-0.8
1,042,577	+		GFF1039	0.36	-0.5
1,042,580	-		GFF1039	0.36	-1.8
1,042,585	-		GFF1039	0.36	+0.9
1,042,591	+		GFF1039	0.37	+0.1
1,042,638	+		GFF1039	0.38	-1.1
1,042,657	-		GFF1039	0.39	-1.9
1,042,667	-		GFF1039	0.40	-1.0
1,042,682	+		GFF1039	0.40	+0.7
1,042,710	+		GFF1039	0.41	-1.5
1,042,723	-		GFF1039	0.42	+0.1
1,042,723	-		GFF1039	0.42	+0.9
1,042,731	+		GFF1039	0.42	-0.1
1,042,740	-		GFF1039	0.42	+0.4
1,042,798	-		GFF1039	0.45	-0.8
1,042,802	-		GFF1039	0.45	-0.1
1,042,858	+		GFF1039	0.47	-1.4
1,042,866	+		GFF1039	0.47	-0.2
1,042,871	+		GFF1039	0.48	+1.0
1,042,871	+		GFF1039	0.48	+0.1
1,042,874	-		GFF1039	0.48	+0.2
1,042,914	-		GFF1039	0.49	-0.1
1,042,916	+		GFF1039	0.49	+0.5
1,042,916	+		GFF1039	0.49	+0.8
1,042,924	-		GFF1039	0.50	+0.7
1,042,936	-		GFF1039	0.50	-1.7
1,042,968	-		GFF1039	0.51	-1.0
1,042,975	-		GFF1039	0.52	-0.4
1,042,975	-		GFF1039	0.52	-1.2
1,043,012	+		GFF1039	0.53	+0.7
1,043,020	-		GFF1039	0.53	-1.4
1,043,038	+		GFF1039	0.54	-0.1
1,043,038	+		GFF1039	0.54	-0.1
1,043,051	+		GFF1039	0.54	+0.0
1,043,054	-		GFF1039	0.55	-0.0
1,043,059	-		GFF1039	0.55	-1.4
1,043,059	-		GFF1039	0.55	-0.3
1,043,074	+		GFF1039	0.55	-0.4
1,043,077	-		GFF1039	0.56	-1.6
1,043,082	+		GFF1039	0.56	-0.1
1,043,087	+		GFF1039	0.56	-1.5
1,043,102	+		GFF1039	0.56	-0.5
1,043,107	+		GFF1039	0.57	-0.6
1,043,107	+		GFF1039	0.57	-0.4
1,043,115	-		GFF1039	0.57	-0.6
1,043,123	+		GFF1039	0.57	-1.2
1,043,126	-		GFF1039	0.57	-1.1
1,043,152	+		GFF1039	0.58	-1.6
1,043,167	-		GFF1039	0.59	-0.9
1,043,198	+		GFF1039	0.60	+0.4
1,043,198	+		GFF1039	0.60	+1.0
1,043,206	-		GFF1039	0.61	-0.5
1,043,245	-		GFF1039	0.62	-0.5
1,043,250	+		GFF1039	0.62	-0.2
1,043,250	+		GFF1039	0.62	+1.1
1,043,268	-		GFF1039	0.63	-0.5
1,043,283	-		GFF1039	0.63	-2.5
1,043,335	+		GFF1039	0.66	-0.3
1,043,345	+		GFF1039	0.66	-2.5
1,043,353	-		GFF1039	0.66	+1.1
1,043,366	+		GFF1039	0.67	+0.9
1,043,366	+		GFF1039	0.67	-1.5
1,043,366	+		GFF1039	0.67	+0.9
1,043,366	+		GFF1039	0.67	+0.2
1,043,366	+		GFF1039	0.67	-1.3
1,043,369	-		GFF1039	0.67	+0.5
1,043,374	-		GFF1039	0.67	+0.2
1,043,389	+		GFF1039	0.68	-0.0
1,043,415	+		GFF1039	0.69	-1.2
1,043,415	+		GFF1039	0.69	+0.5
1,043,415	+		GFF1039	0.69	+1.4
1,043,415	+		GFF1039	0.69	+0.2
1,043,423	-		GFF1039	0.69	+1.9
1,043,423	-		GFF1039	0.69	+0.4
1,043,423	-		GFF1039	0.69	-1.3
1,043,423	-		GFF1039	0.69	-0.9
1,043,423	-		GFF1039	0.69	-1.5
1,043,423	-		GFF1039	0.69	-0.8
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