Strain Fitness in Sphingobium sp. HT1-2 around GFF1003

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,000,380	-		GFF1002	0.67	+0.8
1,000,380	-		GFF1002	0.67	-1.1
1,000,382	+		GFF1002	0.67	-0.8
1,000,419	+		GFF1002	0.68	-0.0
1,000,419	+		GFF1002	0.68	+0.9
1,000,427	-		GFF1002	0.68	-0.4
1,000,444	-		GFF1002	0.69	-0.1
1,000,455	+		GFF1002	0.69	+0.2
1,000,463	-		GFF1002	0.70	+1.1
1,000,481	+		GFF1002	0.70	-0.3
1,000,483	-		GFF1002	0.70	+1.5
1,000,498	+		GFF1002	0.71	-1.7
1,000,506	-		GFF1002	0.71	-2.8
1,000,540	-		GFF1002	0.72	-0.5
1,000,568	+		GFF1002	0.73	+0.2
1,000,568	+		GFF1002	0.73	-1.1
1,000,568	+		GFF1002	0.73	-1.2
1,000,568	+		GFF1002	0.73	-1.8
1,000,568	+		GFF1002	0.73	-0.6
1,000,576	-		GFF1002	0.73	-2.6
1,000,576	-		GFF1002	0.73	+0.3
1,000,576	-		GFF1002	0.73	-1.5
1,000,576	-		GFF1002	0.73	-1.1
1,000,576	-		GFF1002	0.73	-0.4
1,000,579	+		GFF1002	0.73	+0.1
1,000,579	+		GFF1002	0.73	+0.6
1,000,579	+		GFF1002	0.73	-0.1
1,000,579	+		GFF1002	0.73	-0.6
1,000,579	+		GFF1002	0.73	-1.3
1,000,579	+		GFF1002	0.73	+0.2
1,000,579	+		GFF1002	0.73	-0.2
1,000,579	+		GFF1002	0.73	+0.9
1,000,584	+		GFF1002	0.74	+0.2
1,000,584	+		GFF1002	0.74	-1.0
1,000,584	+		GFF1002	0.74	+0.4
1,000,584	+		GFF1002	0.74	+0.4
1,000,587	-		GFF1002	0.74	-0.9
1,000,587	-		GFF1002	0.74	+0.7
1,000,587	-		GFF1002	0.74	-0.2
1,000,587	-		GFF1002	0.74	+0.2
1,000,587	-		GFF1002	0.74	-0.1
1,000,587	-		GFF1002	0.74	-0.2
1,000,587	-		GFF1002	0.74	-0.5
1,000,587	-		GFF1002	0.74	-0.2
1,000,587	-		GFF1002	0.74	+1.6
1,000,587	-		GFF1002	0.74	-1.1
1,000,592	-		GFF1002	0.74	+0.5
1,000,592	-		GFF1002	0.74	+0.8
1,000,592	-		GFF1002	0.74	-0.3
1,000,592	-		GFF1002	0.74	-0.3
1,000,592	-		GFF1002	0.74	-0.9
1,000,592	-		GFF1002	0.74	-0.8
1,000,592	-		GFF1002	0.74	+0.4
1,000,602	+		GFF1002	0.74	-0.9
1,000,602	+		GFF1002	0.74	-2.5
1,000,616	-		GFF1002	0.75	+0.1
1,000,623	-		GFF1002	0.75	+0.2
1,000,623	-		GFF1002	0.75	+0.1
1,000,623	-		GFF1002	0.75	+0.3
1,000,644	+		GFF1002	0.76	-0.1
1,000,657	-		GFF1002	0.76	-0.1
1,000,674	+		GFF1002	0.77	-2.5
1,000,674	+		GFF1002	0.77	-0.8
1,000,682	-		GFF1002	0.77	+0.4
1,000,682	-		GFF1002	0.77	-0.8
1,000,683	+		GFF1002	0.77	+0.4
1,000,689	+		GFF1002	0.77	+0.3
1,000,689	+		GFF1002	0.77	+0.3
1,000,697	-		GFF1002	0.77	+0.9
1,000,697	-		GFF1002	0.77	+0.1
1,000,700	+		GFF1002	0.78	-1.6
1,000,700	+		GFF1002	0.78	+0.5
1,000,712	-		GFF1002	0.78	-2.5
1,000,714	+		GFF1002	0.78	+0.2
1,000,720	-		GFF1002	0.78	-1.3
1,000,720	-		GFF1002	0.78	+0.5
1,000,744	+		GFF1002	0.79	+0.1
1,000,752	-		GFF1002	0.79	-0.3
1,000,752	-		GFF1002	0.79	-0.0
1,000,752	-		GFF1002	0.79	+0.6
1,000,752	-		GFF1002	0.79	+0.2
1,000,780	+		GFF1002	0.80	+0.8
1,000,788	-		GFF1002	0.80	-0.1
1,000,805	-		GFF1002	0.81	-0.1
1,000,805	-		GFF1002	0.81	+0.5
1,000,823	+		GFF1002	0.82	-0.1
1,000,826	-		GFF1002	0.82	+0.7
1,000,831	-		GFF1002	0.82	-0.1
1,000,876	-		GFF1002	0.83	+0.4
1,000,876	-		GFF1002	0.83	+0.1
1,000,876	-		GFF1002	0.83	-1.0
1,000,924	+		GFF1002	0.85	+0.9
1,000,933	+		GFF1002	0.85	-0.5
1,000,941	-		GFF1002	0.86	+0.1
1,000,941	-		GFF1002	0.86	-2.1
1,000,967	+		GFF1002	0.86	-0.9
1,000,969	+		GFF1002	0.86	+0.9
1,000,969	+		GFF1002	0.86	-0.0
1,000,969	+		GFF1002	0.86	+0.7
1,000,975	+		GFF1002	0.87	-2.2
1,000,977	-		GFF1002	0.87	-1.4
1,000,977	-		GFF1002	0.87	-0.4
1,000,992	-		GFF1002	0.87	-0.5
1,000,999	-		GFF1002	0.87	+1.5
1,001,002	+		GFF1002	0.88	+0.7
1,001,011	+		GFF1002	0.88	-0.2
1,001,027	+		GFF1002	0.88	-2.3
1,001,035	-		GFF1002	0.89	-1.6
1,001,035	-		GFF1002	0.89	+0.1
1,001,035	-		GFF1002	0.89	-0.2
1,001,082	-				+0.7
1,001,102	+				+1.8
1,001,102	+				-0.4
1,001,107	+				-0.5
1,001,115	-				+0.5
1,001,117	-				+1.2
1,001,117	-				-0.9
1,001,117	-				-1.5
1,001,117	-				+0.5
1,001,119	+				+1.1
1,001,119	+				+0.9
1,001,119	+				-0.2
1,001,127	-				+1.0
1,001,127	-				+1.9
1,001,127	-				-1.3
1,001,127	-				+0.9
1,001,130	+				-1.7
1,001,137	+				+1.0
1,001,149	+				-0.2
1,001,152	-				-1.2
1,001,154	+				+0.9
1,001,157	-				-0.8
1,001,176	+				+0.3
1,001,181	+				+0.5
1,001,218	+				-1.2
1,001,218	+				+0.1
1,001,218	+				+0.1
1,001,218	+				-1.1
1,001,218	+				-0.1
1,001,218	+				-1.4
1,001,218	+				+0.7
1,001,218	+				+0.4
1,001,218	+				-1.3
1,001,218	+				-0.6
1,001,218	+				+0.8
1,001,218	+				-1.1
1,001,218	+				-0.5
1,001,218	+				-0.7
1,001,219	+				-0.4
1,001,223	+				+1.1
1,001,226	-				+0.3
1,001,226	-				+0.1
1,001,226	-				-1.9
1,001,226	-				+0.9
1,001,226	-				-0.8
1,001,226	-				+0.3
1,001,226	-				+0.7
1,001,226	-				-1.0
1,001,226	-				-1.7
1,001,226	-				+0.5
1,001,226	-				+1.2
1,001,226	-				+1.0
1,001,271	+				-2.4
1,001,279	-				-0.4
1,001,279	-				-1.0
1,001,288	+				+0.6
1,001,288	+				-1.9
1,001,288	+				-0.5
1,001,293	+				+0.6
1,001,296	-				-0.9
1,001,301	-				+0.5
1,001,301	-				-1.2
1,001,305	+				-0.4
1,001,328	+				-0.0
1,001,328	+				+0.6
1,001,328	+				-1.0
1,001,331	-				+0.3
1,001,336	-				-1.4
1,001,336	-				+0.9
1,001,336	-				+1.1
1,001,336	-				-0.3
1,001,350	+				-2.3
1,001,350	+				+1.0
1,001,350	+				+1.1
1,001,350	+				-0.6
1,001,358	-				+0.2
1,001,358	-				+0.9
1,001,358	-				+0.5
1,001,359	-				+0.0
1,001,365	-				-1.6
1,001,366	-				+0.9
1,001,378	+				+0.5
1,001,384	+				-1.1
1,001,396	-				-1.8
1,001,447	-				-0.4
1,001,473	-				+2.0
1,001,484	-				+0.5
1,001,484	-				-0.7
1,001,486	+				-0.2
1,001,514	-		GFF1003	0.12	+1.3
1,001,517	+		GFF1003	0.13	+0.5
1,001,517	+		GFF1003	0.13	-0.9
1,001,517	+		GFF1003	0.13	+0.5
1,001,520	-		GFF1003	0.13	+1.0
1,001,525	-		GFF1003	0.13	-1.1
1,001,525	-		GFF1003	0.13	+0.2
1,001,525	-		GFF1003	0.13	-0.1
1,001,525	-		GFF1003	0.13	-0.5
1,001,531	-		GFF1003	0.14	-0.4
1,001,532	+		GFF1003	0.14	-2.5
1,001,533	+		GFF1003	0.14	-1.2
1,001,536	-		GFF1003	0.14	-0.5
1,001,536	-		GFF1003	0.14	+0.7
1,001,541	-		GFF1003	0.15	+0.6
1,001,546	+		GFF1003	0.15	+0.5
1,001,551	+		GFF1003	0.16	+1.6
1,001,554	-		GFF1003	0.16	-1.8
1,001,556	+		GFF1003	0.16	-0.2
1,001,556	+		GFF1003	0.16	-1.1
1,001,559	-		GFF1003	0.16	+0.9
1,001,564	-		GFF1003	0.17	+1.0
1,001,573	+		GFF1003	0.18	-2.0
1,001,573	+		GFF1003	0.18	+1.4
1,001,573	+		GFF1003	0.18	-0.1
1,001,573	+		GFF1003	0.18	+0.9
1,001,576	-		GFF1003	0.18	-0.4
1,001,581	-		GFF1003	0.18	+0.2
1,001,581	-		GFF1003	0.18	-0.4
1,001,581	-		GFF1003	0.18	-0.6
1,001,581	-		GFF1003	0.18	-2.7
1,001,581	-		GFF1003	0.18	-1.6
1,001,581	-		GFF1003	0.18	+0.2
1,001,585	+		GFF1003	0.19	-0.3
1,001,604	+		GFF1003	0.20	+0.6
1,001,651	-		GFF1003	0.25	+0.2
1,001,677	-		GFF1003	0.27	-0.3
1,001,686	+		GFF1003	0.28	+0.9
1,001,691	+		GFF1003	0.28	+0.7
1,001,699	-		GFF1003	0.29	+0.1
1,001,699	-		GFF1003	0.29	+2.4
1,001,711	+		GFF1003	0.30	-0.1
1,001,719	-		GFF1003	0.31	+0.3
1,001,735	+		GFF1003	0.32	+1.1
1,001,742	+		GFF1003	0.33	-1.7
1,001,750	-		GFF1003	0.33	+0.8
1,001,756	+		GFF1003	0.34	-0.1
1,001,764	-		GFF1003	0.35	+0.3
1,001,778	+		GFF1003	0.36	-0.0
1,001,778	+		GFF1003	0.36	+0.9
1,001,778	+		GFF1003	0.36	-1.4
1,001,778	+		GFF1003	0.36	+0.9
1,001,778	+		GFF1003	0.36	+0.0
1,001,778	+		GFF1003	0.36	-1.0
1,001,778	+		GFF1003	0.36	-0.2
1,001,778	+		GFF1003	0.36	+0.3
1,001,778	+		GFF1003	0.36	-1.9
1,001,778	+		GFF1003	0.36	-0.7
1,001,778	+		GFF1003	0.36	-0.4
1,001,778	+		GFF1003	0.36	-1.2
1,001,778	+		GFF1003	0.36	+0.7
1,001,778	+		GFF1003	0.36	-0.4
1,001,781	-		GFF1003	0.36	-0.1
1,001,781	-		GFF1003	0.36	-1.6
1,001,786	-		GFF1003	0.37	+0.1
1,001,786	-		GFF1003	0.37	+0.9
1,001,786	-		GFF1003	0.37	+2.3
1,001,786	-		GFF1003	0.37	-1.2
1,001,786	-		GFF1003	0.37	+0.8
1,001,786	-		GFF1003	0.37	-0.9
1,001,786	-		GFF1003	0.37	-2.4
1,001,786	-		GFF1003	0.37	+0.4
1,001,786	-		GFF1003	0.37	+1.2
1,001,786	-		GFF1003	0.37	-0.2
1,001,846	-		GFF1003	0.42	-1.5
1,001,852	+		GFF1003	0.43	-1.7
1,001,856	+		GFF1003	0.43	+0.3
1,001,877	+		GFF1003	0.45	+0.1
1,001,877	+		GFF1003	0.45	-2.3
1,001,912	+		GFF1003	0.48	-1.2
1,001,935	+		GFF1003	0.50	+2.3
1,001,964	+		GFF1003	0.53	-1.9
1,001,983	-		GFF1003	0.54	+0.1
1,002,066	+		GFF1003	0.62	-2.4
1,002,067	+		GFF1003	0.62	+0.7
1,002,073	+		GFF1003	0.62	-1.3
1,002,083	+		GFF1003	0.63	+0.1
1,002,089	+		GFF1003	0.64	+0.5
1,002,091	-		GFF1003	0.64	-0.1
1,002,091	-		GFF1003	0.64	+0.3
1,002,101	-		GFF1003	0.65	-1.6
1,002,108	+		GFF1003	0.66	+0.8
1,002,126	-		GFF1003	0.67	-0.3
1,002,144	+		GFF1003	0.69	+0.6
1,002,144	+		GFF1003	0.69	-1.3
1,002,152	-		GFF1003	0.69	+0.4
1,002,152	-		GFF1003	0.69	+0.3
1,002,152	-		GFF1003	0.69	+0.3
1,002,152	-		GFF1003	0.69	+0.3
1,002,156	+		GFF1003	0.70	+0.2
1,002,156	+		GFF1003	0.70	+1.5
1,002,163	+		GFF1003	0.70	+0.1
1,002,205	+		GFF1003	0.74	+1.2
1,002,210	+		GFF1003	0.75	-0.2
1,002,239	-		GFF1003	0.77	-0.1
1,002,250	-		GFF1003	0.78	-0.4
1,002,258	+		GFF1003	0.79	-1.1
1,002,258	+		GFF1003	0.79	-0.7
1,002,258	+		GFF1003	0.79	-1.4
1,002,258	+		GFF1003	0.79	+1.5
1,002,258	+		GFF1003	0.79	+1.7
1,002,258	+		GFF1003	0.79	-1.1
1,002,258	+		GFF1003	0.79	-0.6
1,002,258	+		GFF1003	0.79	+0.1
1,002,266	-		GFF1003	0.80	+0.8
1,002,266	-		GFF1003	0.80	+1.3
1,002,266	-		GFF1003	0.80	-0.3
1,002,266	-		GFF1003	0.80	-0.0
1,002,266	-		GFF1003	0.80	-0.3
1,002,266	-		GFF1003	0.80	-0.4
1,002,266	-		GFF1003	0.80	-0.7
1,002,266	-		GFF1003	0.80	+0.5
1,002,266	-		GFF1003	0.80	-1.7
1,002,301	-		GFF1003	0.83	-0.0
1,002,317	-		GFF1003	0.84	+0.9
1,002,328	+		GFF1003	0.85	+0.8
1,002,346	-		GFF1003	0.87	+0.3
1,002,374	-		GFF1003	0.89	-0.1
1,002,374	-		GFF1003	0.89	+0.4
1,002,387	+				+0.8
1,002,390	-				-1.3
1,002,390	-				-0.6
1,002,400	+				+0.3
1,002,402	+				+0.1
1,002,405	-				-1.1
1,002,425	+				-0.2
1,002,425	+				-0.7
1,002,425	+				-1.1
1,002,425	+				+1.3
1,002,425	+				-0.9
1,002,425	+				+1.1
1,002,425	+				+0.1
1,002,425	+				-0.3
1,002,425	+				-0.8
1,002,425	+				-1.5
1,002,425	+				+0.7
1,002,425	+				-1.2
1,002,433	-				+0.3
1,002,433	-				-1.1
1,002,433	-				+1.1
1,002,433	-				-0.1
1,002,433	-				+0.5
1,002,433	-				-0.3
1,002,439	+				+0.4
1,002,439	+				-2.1
1,002,439	+				+0.2
1,002,440	+				+1.4
1,002,440	+				+0.2
1,002,444	+				-1.3
1,002,444	+				-0.7
1,002,445	+				+0.8
1,002,447	-				-2.7
1,002,447	-				+0.2
1,002,447	-				+0.0
1,002,447	-				-0.1
1,002,448	-				-0.2
1,002,456	-				+0.1
1,002,458	-				-0.7
1,002,458	-				-3.3
1,002,465	+				+0.1
1,002,475	-				-1.1
1,002,482	+				+0.7
1,002,482	+				-0.9
1,002,482	+				-1.8
1,002,482	+				+0.1
1,002,489	-				-0.1
1,002,489	-				-0.7
1,002,489	-				+0.7
1,002,489	-				-0.1
1,002,489	-				+0.9
1,002,490	-				-0.4
1,002,493	-				+1.8
1,002,523	-				-0.2
1,002,550	+				-0.6
1,002,558	-				+0.2
1,002,606	-				+0.2
1,002,611	+				-0.6
1,002,616	+				+0.7
1,002,616	+				+1.1
1,002,618	-				-0.3
1,002,618	-				+0.2
1,002,618	-				+0.2
1,002,624	-				-1.9
1,002,651	+				+1.6
1,002,656	+				-0.6
1,002,656	+				-0.1
1,002,662	+				+0.7
1,002,664	-				+0.5
1,002,670	-				-0.5
1,002,670	-				-1.9
1,002,670	-				-1.6
1,002,723	+		GFF1004	0.13	-1.8
1,002,725	+		GFF1004	0.13	-0.5
1,002,725	+		GFF1004	0.13	+0.1
1,002,759	+		GFF1004	0.15	-0.5
1,002,759	+		GFF1004	0.15	-0.7
1,002,766	+		GFF1004	0.15	-0.3
1,002,767	-		GFF1004	0.16	+0.5
1,002,772	+		GFF1004	0.16	-0.3
1,002,777	+		GFF1004	0.16	-0.8
1,002,777	+		GFF1004	0.16	+1.0
1,002,777	+		GFF1004	0.16	-1.4
1,002,780	-		GFF1004	0.16	-2.6
1,002,780	-		GFF1004	0.16	+0.5
1,002,780	-		GFF1004	0.16	-0.5
1,002,783	+		GFF1004	0.17	-0.8
1,002,785	-		GFF1004	0.17	+0.6
1,002,785	-		GFF1004	0.17	+0.3
1,002,785	-		GFF1004	0.17	+0.3
1,002,785	-		GFF1004	0.17	-0.4
1,002,785	-		GFF1004	0.17	-2.1
1,002,801	+		GFF1004	0.18	-1.5
1,002,801	+		GFF1004	0.18	-0.8
1,002,836	+		GFF1004	0.20	-0.7
1,002,836	+		GFF1004	0.20	+0.9
1,002,927	+		GFF1004	0.26	+1.1
1,002,927	+		GFF1004	0.26	+0.5
1,002,934	-		GFF1004	0.26	-0.6
1,002,934	-		GFF1004	0.26	+0.4
1,002,934	-		GFF1004	0.26	-1.5
1,002,935	-		GFF1004	0.26	-1.3
1,002,939	-		GFF1004	0.26	-0.3
1,002,944	+		GFF1004	0.27	-0.7
1,002,947	+		GFF1004	0.27	+0.0
1,002,957	-		GFF1004	0.28	-2.5
1,002,963	-		GFF1004	0.28	-0.8
1,002,972	-		GFF1004	0.29	-0.6
1,002,974	+		GFF1004	0.29	-0.0
1,002,974	+		GFF1004	0.29	+0.5
1,002,979	+		GFF1004	0.29	-1.9
1,002,979	+		GFF1004	0.29	-3.3
1,002,979	+		GFF1004	0.29	-0.0
1,002,979	+		GFF1004	0.29	-0.1
1,002,987	-		GFF1004	0.29	+0.2
1,002,987	-		GFF1004	0.29	-1.2
1,002,987	-		GFF1004	0.29	+1.1
1,002,992	+		GFF1004	0.30	+0.5
1,002,992	+		GFF1004	0.30	-2.1
1,002,998	+		GFF1004	0.30	-0.3
1,002,998	+		GFF1004	0.30	-0.1
1,003,000	-		GFF1004	0.30	+0.5
1,003,007	-		GFF1004	0.31	-0.8
1,003,029	+		GFF1004	0.32	-2.1
1,003,029	+		GFF1004	0.32	+0.7
1,003,083	+		GFF1004	0.36	+0.5
1,003,132	+		GFF1004	0.39	-1.7
1,003,143	-		GFF1004	0.39	-0.1
1,003,175	+		GFF1004	0.41	+0.5
1,003,176	-		GFF1004	0.41	-1.3
1,003,201	-		GFF1004	0.43	+0.8
1,003,226	+		GFF1004	0.45	-1.1
1,003,241	-		GFF1004	0.46	-0.4
1,003,248	+		GFF1004	0.46	-1.1
1,003,250	+		GFF1004	0.46	+0.1
1,003,250	+		GFF1004	0.46	-1.7
1,003,258	-		GFF1004	0.47	-0.9
1,003,258	-		GFF1004	0.47	-2.0
1,003,258	-		GFF1004	0.47	+0.8
1,003,258	-		GFF1004	0.47	-0.9
1,003,260	+		GFF1004	0.47	-0.5
1,003,276	+		GFF1004	0.48	+0.5
1,003,276	+		GFF1004	0.48	+1.3
1,003,286	+		GFF1004	0.48	-0.5
1,003,286	+		GFF1004	0.48	+0.7
1,003,286	+		GFF1004	0.48	-0.8
1,003,286	+		GFF1004	0.48	+1.1
1,003,286	+		GFF1004	0.48	+0.6
1,003,289	-		GFF1004	0.49	+0.7
1,003,291	+		GFF1004	0.49	+1.2
1,003,291	+		GFF1004	0.49	-0.8
1,003,291	+		GFF1004	0.49	-1.9
1,003,294	-		GFF1004	0.49	+0.7
1,003,294	-		GFF1004	0.49	-0.6
1,003,294	-		GFF1004	0.49	-0.1
1,003,296	+		GFF1004	0.49	-1.5
1,003,299	-		GFF1004	0.49	-1.5
1,003,299	-		GFF1004	0.49	-0.5
1,003,304	-		GFF1004	0.50	-0.1
1,003,304	-		GFF1004	0.50	-0.4
1,003,304	-		GFF1004	0.50	-0.8
1,003,304	-		GFF1004	0.50	-1.5
1,003,304	-		GFF1004	0.50	-1.1
1,003,352	-		GFF1004	0.53	+0.5
1,003,353	-		GFF1004	0.53	-0.4
1,003,353	-		GFF1004	0.53	+0.8
1,003,369	+		GFF1004	0.54	-0.7
1,003,377	-		GFF1004	0.54	-2.1
1,003,377	-		GFF1004	0.54	-0.1
1,003,386	-		GFF1004	0.55	+1.6
1,003,418	-		GFF1004	0.57	+0.1
1,003,436	+		GFF1004	0.58	-0.7
1,003,437	-		GFF1004	0.58	+0.7
1,003,492	+		GFF1004	0.61	-1.7
1,003,492	+		GFF1004	0.61	+0.7