Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF835 and GFF836 are separated by 6 nucleotides GFF836 and GFF837 are separated by 103 nucleotides GFF837 and GFF838 are separated by 23 nucleotides GFF838 and GFF839 are separated by 25 nucleotides
GFF835 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 823,078 to 824,859
GFF835
GFF836 - hypothetical protein, at 824,866 to 825,018
GFF836
GFF837 - tRNA-Thr-GGT, at 825,122 to 825,196
GFF837
GFF838 - hypothetical protein, at 825,220 to 825,474
GFF838
GFF839 - hypothetical protein, at 825,500 to 827,518
GFF839
Position (kb) 824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 823.915 kb on - strand, within GFF835 at 823.940 kb on + strand, within GFF835 at 823.954 kb on - strand, within GFF835 at 823.955 kb on + strand, within GFF835 at 823.968 kb on + strand, within GFF835 at 823.976 kb on - strand, within GFF835 at 824.035 kb on + strand, within GFF835 at 824.035 kb on + strand, within GFF835 at 824.035 kb on + strand, within GFF835 at 824.043 kb on - strand, within GFF835 at 824.043 kb on - strand, within GFF835 at 824.119 kb on - strand, within GFF835 at 824.119 kb on - strand, within GFF835 at 824.140 kb on - strand, within GFF835 at 824.142 kb on + strand, within GFF835 at 824.246 kb on + strand, within GFF835 at 824.254 kb on - strand, within GFF835 at 824.299 kb on + strand, within GFF835 at 824.345 kb on + strand, within GFF835 at 824.374 kb on + strand, within GFF835 at 824.389 kb on + strand, within GFF835 at 824.448 kb on + strand, within GFF835 at 824.462 kb on - strand, within GFF835 at 824.574 kb on - strand, within GFF835 at 824.640 kb on + strand, within GFF835 at 824.640 kb on + strand, within GFF835 at 824.692 kb on + strand at 824.692 kb on + strand at 824.692 kb on + strand at 824.752 kb on + strand at 824.771 kb on - strand at 824.808 kb on + strand at 824.808 kb on + strand at 824.821 kb on + strand at 824.829 kb on - strand at 824.834 kb on - strand at 824.839 kb on - strand at 824.853 kb on + strand at 824.853 kb on + strand at 824.861 kb on - strand at 824.861 kb on - strand at 824.861 kb on - strand at 824.891 kb on + strand, within GFF836 at 824.891 kb on + strand, within GFF836 at 824.891 kb on + strand, within GFF836 at 824.891 kb on + strand, within GFF836 at 824.892 kb on + strand, within GFF836 at 824.897 kb on + strand, within GFF836 at 824.898 kb on + strand, within GFF836 at 824.898 kb on + strand, within GFF836 at 824.898 kb on + strand, within GFF836 at 824.898 kb on + strand, within GFF836 at 824.899 kb on - strand, within GFF836 at 824.899 kb on - strand, within GFF836 at 824.899 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.906 kb on - strand, within GFF836 at 824.926 kb on + strand, within GFF836 at 824.926 kb on + strand, within GFF836 at 824.926 kb on + strand, within GFF836 at 824.926 kb on + strand, within GFF836 at 824.926 kb on + strand, within GFF836 at 824.926 kb on + strand, within GFF836 at 824.934 kb on - strand, within GFF836 at 824.944 kb on - strand, within GFF836 at 824.967 kb on + strand, within GFF836 at 825.046 kb on + strand at 825.047 kb on + strand at 825.203 kb on - strand at 825.258 kb on - strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.270 kb on + strand, within GFF838 at 825.278 kb on - strand, within GFF838 at 825.278 kb on - strand, within GFF838 at 825.278 kb on - strand, within GFF838 at 825.278 kb on - strand, within GFF838 at 825.278 kb on - strand, within GFF838 at 825.278 kb on - strand, within GFF838 at 825.278 kb on - strand, within GFF838 at 825.292 kb on - strand, within GFF838 at 825.335 kb on - strand, within GFF838 at 825.345 kb on + strand, within GFF838 at 825.359 kb on + strand, within GFF838 at 825.359 kb on + strand, within GFF838 at 825.364 kb on + strand, within GFF838 at 825.364 kb on + strand, within GFF838 at 825.372 kb on - strand, within GFF838 at 825.407 kb on + strand, within GFF838 at 825.407 kb on + strand, within GFF838 at 825.415 kb on - strand, within GFF838 at 825.415 kb on - strand, within GFF838 at 825.415 kb on - strand, within GFF838 at 825.415 kb on - strand, within GFF838 at 825.415 kb on - strand, within GFF838 at 825.425 kb on - strand, within GFF838 at 825.430 kb on - strand, within GFF838 at 825.430 kb on - strand, within GFF838 at 825.432 kb on + strand, within GFF838 at 825.440 kb on + strand, within GFF838 at 825.440 kb on + strand, within GFF838 at 825.440 kb on - strand, within GFF838 at 825.446 kb on + strand, within GFF838 at 825.448 kb on - strand, within GFF838 at 825.469 kb on - strand at 825.486 kb on - strand at 825.486 kb on - strand at 825.504 kb on - strand at 825.511 kb on + strand at 825.511 kb on + strand at 825.511 kb on + strand at 825.511 kb on + strand at 825.511 kb on + strand at 825.519 kb on + strand at 825.521 kb on + strand at 825.532 kb on + strand at 825.532 kb on + strand at 825.540 kb on - strand at 825.542 kb on + strand at 825.545 kb on - strand at 825.545 kb on - strand at 825.550 kb on - strand at 825.576 kb on + strand at 825.580 kb on + strand at 825.580 kb on - strand at 825.583 kb on - strand at 825.585 kb on - strand at 825.603 kb on - strand at 825.616 kb on + strand at 825.616 kb on + strand at 825.622 kb on + strand at 825.624 kb on - strand at 825.659 kb on + strand at 825.659 kb on + strand at 825.664 kb on - strand at 825.671 kb on + strand at 825.672 kb on - strand at 825.676 kb on + strand at 825.684 kb on - strand at 825.684 kb on - strand at 825.684 kb on - strand at 825.684 kb on - strand at 825.686 kb on + strand at 825.686 kb on - strand at 825.691 kb on - strand at 825.692 kb on - strand at 825.694 kb on - strand at 825.696 kb on + strand at 825.700 kb on + strand at 825.704 kb on - strand, within GFF839 at 825.714 kb on + strand, within GFF839 at 825.714 kb on + strand, within GFF839 at 825.722 kb on - strand, within GFF839 at 825.722 kb on - strand, within GFF839 at 825.722 kb on - strand, within GFF839 at 825.727 kb on - strand, within GFF839 at 825.734 kb on - strand, within GFF839 at 825.744 kb on - strand, within GFF839 at 825.749 kb on - strand, within GFF839 at 825.764 kb on - strand, within GFF839 at 825.764 kb on - strand, within GFF839 at 825.764 kb on - strand, within GFF839 at 825.764 kb on - strand, within GFF839 at 825.837 kb on + strand, within GFF839 at 825.848 kb on + strand, within GFF839 at 825.853 kb on + strand, within GFF839 at 825.907 kb on + strand, within GFF839 at 825.915 kb on - strand, within GFF839 at 825.915 kb on - strand, within GFF839 at 825.915 kb on - strand, within GFF839 at 825.923 kb on - strand, within GFF839 at 825.931 kb on + strand, within GFF839 at 825.946 kb on + strand, within GFF839 at 825.952 kb on + strand, within GFF839 at 825.955 kb on + strand, within GFF839 at 825.960 kb on - strand, within GFF839 at 825.960 kb on - strand, within GFF839 at 825.960 kb on - strand, within GFF839 at 825.970 kb on - strand, within GFF839 at 825.999 kb on + strand, within GFF839 at 826.014 kb on + strand, within GFF839 at 826.014 kb on + strand, within GFF839 at 826.017 kb on - strand, within GFF839
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 823,915 - GFF835 0.47 -2.0 823,940 + GFF835 0.48 +0.7 823,954 - GFF835 0.49 -1.3 823,955 + GFF835 0.49 -0.2 823,968 + GFF835 0.50 -1.4 823,976 - GFF835 0.50 +0.7 824,035 + GFF835 0.54 -0.5 824,035 + GFF835 0.54 -1.8 824,035 + GFF835 0.54 -1.0 824,043 - GFF835 0.54 -1.3 824,043 - GFF835 0.54 -2.3 824,119 - GFF835 0.58 +0.3 824,119 - GFF835 0.58 -1.2 824,140 - GFF835 0.60 +1.1 824,142 + GFF835 0.60 -1.4 824,246 + GFF835 0.66 -0.5 824,254 - GFF835 0.66 -0.5 824,299 + GFF835 0.69 +0.4 824,345 + GFF835 0.71 +0.5 824,374 + GFF835 0.73 -1.9 824,389 + GFF835 0.74 -2.5 824,448 + GFF835 0.77 -0.7 824,462 - GFF835 0.78 -1.1 824,574 - GFF835 0.84 -1.8 824,640 + GFF835 0.88 +0.2 824,640 + GFF835 0.88 -0.6 824,692 + -0.4 824,692 + -0.0 824,692 + -1.1 824,752 + +1.4 824,771 - -1.2 824,808 + +0.5 824,808 + -1.4 824,821 + -0.0 824,829 - +0.4 824,834 - -0.8 824,839 - -0.7 824,853 + -0.2 824,853 + +0.1 824,861 - -0.5 824,861 - +0.3 824,861 - +0.4 824,891 + GFF836 0.16 +1.5 824,891 + GFF836 0.16 +0.8 824,891 + GFF836 0.16 +0.5 824,891 + GFF836 0.16 +0.4 824,892 + GFF836 0.17 -0.9 824,897 + GFF836 0.20 -0.2 824,898 + GFF836 0.21 -0.3 824,898 + GFF836 0.21 -1.7 824,898 + GFF836 0.21 +0.9 824,898 + GFF836 0.21 +0.8 824,899 - GFF836 0.22 +0.2 824,899 - GFF836 0.22 +0.4 824,899 - GFF836 0.22 -2.4 824,906 - GFF836 0.26 -1.1 824,906 - GFF836 0.26 +0.2 824,906 - GFF836 0.26 -0.2 824,906 - GFF836 0.26 -0.3 824,906 - GFF836 0.26 -0.7 824,906 - GFF836 0.26 +0.2 824,906 - GFF836 0.26 +0.2 824,906 - GFF836 0.26 +1.1 824,926 + GFF836 0.39 -0.3 824,926 + GFF836 0.39 +0.1 824,926 + GFF836 0.39 +0.2 824,926 + GFF836 0.39 -0.2 824,926 + GFF836 0.39 -2.1 824,926 + GFF836 0.39 -0.1 824,934 - GFF836 0.44 +1.3 824,944 - GFF836 0.51 -3.3 824,967 + GFF836 0.66 -2.0 825,046 + -0.1 825,047 + +0.2 825,203 - +1.2 825,258 - GFF838 0.15 -2.1 825,270 + GFF838 0.20 -0.7 825,270 + GFF838 0.20 -1.9 825,270 + GFF838 0.20 +1.2 825,270 + GFF838 0.20 +1.7 825,270 + GFF838 0.20 -0.2 825,270 + GFF838 0.20 +0.2 825,270 + GFF838 0.20 -1.5 825,270 + GFF838 0.20 +0.3 825,270 + GFF838 0.20 +0.7 825,278 - GFF838 0.23 -2.0 825,278 - GFF838 0.23 -2.1 825,278 - GFF838 0.23 +0.3 825,278 - GFF838 0.23 -0.2 825,278 - GFF838 0.23 -1.5 825,278 - GFF838 0.23 -1.0 825,278 - GFF838 0.23 -0.5 825,292 - GFF838 0.28 -0.4 825,335 - GFF838 0.45 -0.3 825,345 + GFF838 0.49 -0.8 825,359 + GFF838 0.55 +0.4 825,359 + GFF838 0.55 -0.3 825,364 + GFF838 0.56 +0.3 825,364 + GFF838 0.56 -0.2 825,372 - GFF838 0.60 +0.4 825,407 + GFF838 0.73 -0.1 825,407 + GFF838 0.73 +2.1 825,415 - GFF838 0.76 -0.1 825,415 - GFF838 0.76 +0.1 825,415 - GFF838 0.76 -1.9 825,415 - GFF838 0.76 -1.2 825,415 - GFF838 0.76 -1.4 825,425 - GFF838 0.80 -2.2 825,430 - GFF838 0.82 -1.5 825,430 - GFF838 0.82 -0.3 825,432 + GFF838 0.83 -0.6 825,440 + GFF838 0.86 -0.6 825,440 + GFF838 0.86 +0.8 825,440 - GFF838 0.86 +0.3 825,446 + GFF838 0.89 -0.4 825,448 - GFF838 0.89 -0.9 825,469 - -0.3 825,486 - -1.3 825,486 - -2.1 825,504 - +1.0 825,511 + -0.4 825,511 + +0.6 825,511 + -1.9 825,511 + -0.9 825,511 + +0.5 825,519 + +0.4 825,521 + +0.8 825,532 + +0.5 825,532 + -1.7 825,540 - -2.4 825,542 + +0.7 825,545 - -0.1 825,545 - -1.4 825,550 - +0.3 825,576 + -1.6 825,580 + -1.4 825,580 - -0.2 825,583 - -0.7 825,585 - -0.4 825,603 - +0.5 825,616 + -0.7 825,616 + -1.1 825,622 + +0.4 825,624 - -0.8 825,659 + -2.0 825,659 + -2.2 825,664 - +1.0 825,671 + -1.0 825,672 - -0.6 825,676 + -0.4 825,684 - +0.8 825,684 - +1.4 825,684 - -0.4 825,684 - +0.1 825,686 + +0.8 825,686 - -2.6 825,691 - -1.2 825,692 - -1.6 825,694 - -0.4 825,696 + -1.2 825,700 + +1.6 825,704 - GFF839 0.10 +0.2 825,714 + GFF839 0.11 -1.2 825,714 + GFF839 0.11 +0.8 825,722 - GFF839 0.11 +1.2 825,722 - GFF839 0.11 -0.8 825,722 - GFF839 0.11 +0.5 825,727 - GFF839 0.11 -0.4 825,734 - GFF839 0.12 -0.2 825,744 - GFF839 0.12 +0.1 825,749 - GFF839 0.12 +1.1 825,764 - GFF839 0.13 -0.4 825,764 - GFF839 0.13 +0.5 825,764 - GFF839 0.13 -0.3 825,764 - GFF839 0.13 +0.9 825,837 + GFF839 0.17 -1.8 825,848 + GFF839 0.17 -0.7 825,853 + GFF839 0.17 -0.3 825,907 + GFF839 0.20 +0.1 825,915 - GFF839 0.21 -0.2 825,915 - GFF839 0.21 -0.8 825,915 - GFF839 0.21 +0.3 825,923 - GFF839 0.21 -0.3 825,931 + GFF839 0.21 -1.5 825,946 + GFF839 0.22 -0.2 825,952 + GFF839 0.22 +0.5 825,955 + GFF839 0.23 -0.2 825,960 - GFF839 0.23 -1.5 825,960 - GFF839 0.23 -1.1 825,960 - GFF839 0.23 -2.6 825,970 - GFF839 0.23 -3.0 825,999 + GFF839 0.25 -0.1 826,014 + GFF839 0.25 +0.0 826,014 + GFF839 0.25 -0.0 826,017 - GFF839 0.26 -1.6
Or see this region's nucleotide sequence