Strain Fitness in Sphingobium sp. HT1-2 around GFF827

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF825 and GFF826 overlap by 4 nucleotidesGFF826 and GFF827 overlap by 4 nucleotidesGFF827 and GFF828 overlap by 4 nucleotides GFF825 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 813,594 to 814,577 GFF825 GFF826 - Cobalamin synthase (EC 2.7.8.26), at 814,574 to 815,293 GFF826 GFF827 - 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11, at 815,290 to 815,859 GFF827 GFF828 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 815,856 to 816,869 GFF828 Position (kb) 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1at 814.325 kb on + strand, within GFF825at 814.336 kb on + strand, within GFF825at 814.338 kb on + strand, within GFF825at 814.346 kb on - strand, within GFF825at 814.348 kb on + strand, within GFF825at 814.356 kb on - strand, within GFF825at 814.384 kb on + strand, within GFF825at 814.384 kb on + strand, within GFF825at 814.392 kb on - strand, within GFF825at 814.467 kb on + strand, within GFF825at 814.469 kb on - strand, within GFF825at 814.470 kb on - strand, within GFF825at 814.482 kb on - strandat 814.501 kb on - strandat 814.503 kb on + strandat 814.511 kb on - strandat 814.573 kb on + strandat 814.573 kb on + strandat 814.579 kb on - strandat 814.595 kb on - strandat 814.610 kb on - strandat 814.617 kb on + strandat 814.617 kb on + strandat 814.617 kb on + strandat 814.635 kb on - strandat 814.669 kb on + strand, within GFF826at 814.682 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.689 kb on + strand, within GFF826at 814.697 kb on - strand, within GFF826at 814.697 kb on - strand, within GFF826at 814.697 kb on - strand, within GFF826at 814.697 kb on - strand, within GFF826at 814.697 kb on - strand, within GFF826at 814.737 kb on - strand, within GFF826at 814.766 kb on - strand, within GFF826at 814.766 kb on - strand, within GFF826at 814.826 kb on - strand, within GFF826at 814.842 kb on + strand, within GFF826at 814.850 kb on - strand, within GFF826at 814.853 kb on - strand, within GFF826at 814.854 kb on + strand, within GFF826at 814.854 kb on + strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.880 kb on + strand, within GFF826at 814.895 kb on + strand, within GFF826at 814.896 kb on + strand, within GFF826at 814.904 kb on - strand, within GFF826at 814.904 kb on - strand, within GFF826at 814.904 kb on - strand, within GFF826at 814.913 kb on - strand, within GFF826at 814.925 kb on - strand, within GFF826at 814.945 kb on + strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.976 kb on + strand, within GFF826at 815.021 kb on + strand, within GFF826at 815.029 kb on - strand, within GFF826at 815.029 kb on - strand, within GFF826at 815.034 kb on - strand, within GFF826at 815.049 kb on + strand, within GFF826at 815.057 kb on - strand, within GFF826at 815.061 kb on - strand, within GFF826at 815.069 kb on + strand, within GFF826at 815.069 kb on + strand, within GFF826at 815.077 kb on - strand, within GFF826at 815.099 kb on + strand, within GFF826at 815.102 kb on - strand, within GFF826at 815.102 kb on - strand, within GFF826at 815.107 kb on - strand, within GFF826at 815.198 kb on - strand, within GFF826at 815.223 kb on + strandat 815.225 kb on + strandat 815.252 kb on - strandat 815.286 kb on + strandat 815.287 kb on - strandat 815.287 kb on - strandat 815.288 kb on + strandat 815.288 kb on - strandat 815.294 kb on - strandat 815.294 kb on - strandat 815.303 kb on + strandat 815.322 kb on - strandat 815.333 kb on + strandat 815.336 kb on - strandat 815.350 kb on + strand, within GFF827at 815.358 kb on - strand, within GFF827at 815.360 kb on + strand, within GFF827at 815.365 kb on + strand, within GFF827at 815.368 kb on - strand, within GFF827at 815.368 kb on - strand, within GFF827at 815.370 kb on + strand, within GFF827at 815.370 kb on + strand, within GFF827at 815.383 kb on + strand, within GFF827at 815.393 kb on + strand, within GFF827at 815.394 kb on - strand, within GFF827at 815.421 kb on - strand, within GFF827at 815.462 kb on - strand, within GFF827at 815.467 kb on + strand, within GFF827at 815.510 kb on + strand, within GFF827at 815.593 kb on + strand, within GFF827at 815.598 kb on + strand, within GFF827at 815.600 kb on - strand, within GFF827at 815.601 kb on - strand, within GFF827at 815.601 kb on - strand, within GFF827at 815.601 kb on - strand, within GFF827at 815.601 kb on - strand, within GFF827at 815.606 kb on - strand, within GFF827at 815.641 kb on + strand, within GFF827at 815.645 kb on - strand, within GFF827at 815.650 kb on - strand, within GFF827at 815.735 kb on + strand, within GFF827at 815.741 kb on + strand, within GFF827at 815.743 kb on - strand, within GFF827at 815.743 kb on - strand, within GFF827at 815.753 kb on - strand, within GFF827at 815.783 kb on + strand, within GFF827at 815.791 kb on - strand, within GFF827at 815.873 kb on + strandat 815.897 kb on - strandat 815.950 kb on + strandat 815.963 kb on - strand, within GFF828at 816.012 kb on + strand, within GFF828at 816.069 kb on + strand, within GFF828at 816.069 kb on + strand, within GFF828at 816.077 kb on - strand, within GFF828at 816.118 kb on + strand, within GFF828at 816.128 kb on + strand, within GFF828at 816.150 kb on + strand, within GFF828at 816.158 kb on + strand, within GFF828at 816.161 kb on - strand, within GFF828at 816.161 kb on - strand, within GFF828at 816.161 kb on - strand, within GFF828at 816.161 kb on - strand, within GFF828at 816.225 kb on - strand, within GFF828at 816.230 kb on - strand, within GFF828at 816.304 kb on - strand, within GFF828at 816.318 kb on + strand, within GFF828at 816.318 kb on + strand, within GFF828at 816.326 kb on - strand, within GFF828at 816.332 kb on + strand, within GFF828at 816.333 kb on + strand, within GFF828at 816.348 kb on + strand, within GFF828at 816.348 kb on + strand, within GFF828at 816.356 kb on - strand, within GFF828at 816.356 kb on - strand, within GFF828at 816.356 kb on - strand, within GFF828at 816.413 kb on - strand, within GFF828at 816.413 kb on - strand, within GFF828at 816.456 kb on - strand, within GFF828at 816.460 kb on + strand, within GFF828at 816.474 kb on - strand, within GFF828at 816.489 kb on - strand, within GFF828at 816.496 kb on - strand, within GFF828at 816.507 kb on - strand, within GFF828at 816.640 kb on + strand, within GFF828at 816.648 kb on - strand, within GFF828at 816.733 kb on + strand, within GFF828at 816.773 kb on - strandat 816.773 kb on - strandat 816.773 kb on - strandat 816.801 kb on + strandat 816.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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814,325 + GFF825 0.74 -2.3
814,336 + GFF825 0.75 -1.6
814,338 + GFF825 0.76 -1.5
814,346 - GFF825 0.76 -0.8
814,348 + GFF825 0.77 -1.6
814,356 - GFF825 0.77 -1.3
814,384 + GFF825 0.80 -1.2
814,384 + GFF825 0.80 +0.3
814,392 - GFF825 0.81 -1.2
814,467 + GFF825 0.89 -2.4
814,469 - GFF825 0.89 -1.4
814,470 - GFF825 0.89 -1.6
814,482 - -2.2
814,501 - -0.3
814,503 + -1.3
814,511 - -1.2
814,573 + -0.2
814,573 + -0.4
814,579 - -1.2
814,595 - -1.3
814,610 - -1.1
814,617 + -1.5
814,617 + -2.0
814,617 + -0.4
814,635 - -1.4
814,669 + GFF826 0.13 -2.5
814,682 + GFF826 0.15 -1.7
814,689 + GFF826 0.16 -1.8
814,689 + GFF826 0.16 -1.6
814,689 + GFF826 0.16 -1.9
814,689 + GFF826 0.16 -1.4
814,689 + GFF826 0.16 -1.7
814,689 + GFF826 0.16 -2.9
814,689 + GFF826 0.16 -0.9
814,697 - GFF826 0.17 -1.2
814,697 - GFF826 0.17 -0.9
814,697 - GFF826 0.17 -2.2
814,697 - GFF826 0.17 -1.9
814,697 - GFF826 0.17 -2.2
814,737 - GFF826 0.23 -1.2
814,766 - GFF826 0.27 -1.9
814,766 - GFF826 0.27 -1.2
814,826 - GFF826 0.35 -0.0
814,842 + GFF826 0.37 -1.2
814,850 - GFF826 0.38 -1.2
814,853 - GFF826 0.39 -1.7
814,854 + GFF826 0.39 -1.2
814,854 + GFF826 0.39 +0.1
814,862 - GFF826 0.40 -2.8
814,862 - GFF826 0.40 -0.6
814,862 - GFF826 0.40 -1.2
814,880 + GFF826 0.42 -1.3
814,895 + GFF826 0.45 -2.0
814,896 + GFF826 0.45 -1.7
814,904 - GFF826 0.46 -1.4
814,904 - GFF826 0.46 -1.9
814,904 - GFF826 0.46 -1.7
814,913 - GFF826 0.47 -1.5
814,925 - GFF826 0.49 -1.9
814,945 + GFF826 0.52 -1.5
814,953 - GFF826 0.53 -1.2
814,976 + GFF826 0.56 -1.2
815,021 + GFF826 0.62 -1.3
815,029 - GFF826 0.63 -1.9
815,029 - GFF826 0.63 -1.7
815,034 - GFF826 0.64 -2.4
815,049 + GFF826 0.66 +0.3
815,057 - GFF826 0.67 -2.5
815,061 - GFF826 0.68 -1.6
815,069 + GFF826 0.69 -1.3
815,069 + GFF826 0.69 -1.6
815,077 - GFF826 0.70 -1.7
815,099 + GFF826 0.73 -2.3
815,102 - GFF826 0.73 -0.5
815,102 - GFF826 0.73 -1.4
815,107 - GFF826 0.74 -2.0
815,198 - GFF826 0.87 -1.2
815,223 + -1.3
815,225 + -1.7
815,252 - -1.9
815,286 + -2.9
815,287 - -1.4
815,287 - +0.3
815,288 + +0.8
815,288 - -0.2
815,294 - -0.1
815,294 - -1.3
815,303 + +0.3
815,322 - -0.3
815,333 + -0.1
815,336 - -1.1
815,350 + GFF827 0.11 -2.5
815,358 - GFF827 0.12 +0.3
815,360 + GFF827 0.12 +0.9
815,365 + GFF827 0.13 +0.3
815,368 - GFF827 0.14 -0.0
815,368 - GFF827 0.14 -1.4
815,370 + GFF827 0.14 -1.6
815,370 + GFF827 0.14 -0.0
815,383 + GFF827 0.16 -1.2
815,393 + GFF827 0.18 -1.0
815,394 - GFF827 0.18 -1.3
815,421 - GFF827 0.23 -2.1
815,462 - GFF827 0.30 -2.4
815,467 + GFF827 0.31 -0.2
815,510 + GFF827 0.39 -1.2
815,593 + GFF827 0.53 -1.2
815,598 + GFF827 0.54 -0.2
815,600 - GFF827 0.54 +0.1
815,601 - GFF827 0.55 -1.7
815,601 - GFF827 0.55 -1.3
815,601 - GFF827 0.55 -1.0
815,601 - GFF827 0.55 -1.0
815,606 - GFF827 0.55 -2.0
815,641 + GFF827 0.62 -1.6
815,645 - GFF827 0.62 +1.1
815,650 - GFF827 0.63 +0.2
815,735 + GFF827 0.78 +0.9
815,741 + GFF827 0.79 +0.5
815,743 - GFF827 0.79 -0.4
815,743 - GFF827 0.79 +0.4
815,753 - GFF827 0.81 +0.1
815,783 + GFF827 0.86 -1.7
815,791 - GFF827 0.88 -0.5
815,873 + -0.3
815,897 - -2.3
815,950 + -1.7
815,963 - GFF828 0.11 -1.4
816,012 + GFF828 0.15 -2.3
816,069 + GFF828 0.21 -0.0
816,069 + GFF828 0.21 -1.3
816,077 - GFF828 0.22 -1.9
816,118 + GFF828 0.26 -1.4
816,128 + GFF828 0.27 -1.4
816,150 + GFF828 0.29 -2.5
816,158 + GFF828 0.30 -1.9
816,161 - GFF828 0.30 -1.8
816,161 - GFF828 0.30 -0.4
816,161 - GFF828 0.30 -1.5
816,161 - GFF828 0.30 -1.2
816,225 - GFF828 0.36 -1.9
816,230 - GFF828 0.37 -1.3
816,304 - GFF828 0.44 -1.6
816,318 + GFF828 0.46 -1.8
816,318 + GFF828 0.46 -1.9
816,326 - GFF828 0.46 -1.3
816,332 + GFF828 0.47 -0.4
816,333 + GFF828 0.47 -1.2
816,348 + GFF828 0.49 -1.7
816,348 + GFF828 0.49 -1.9
816,356 - GFF828 0.49 -2.3
816,356 - GFF828 0.49 -2.0
816,356 - GFF828 0.49 -1.5
816,413 - GFF828 0.55 -2.5
816,413 - GFF828 0.55 -1.6
816,456 - GFF828 0.59 -1.9
816,460 + GFF828 0.60 -2.3
816,474 - GFF828 0.61 -1.6
816,489 - GFF828 0.62 -1.4
816,496 - GFF828 0.63 -0.9
816,507 - GFF828 0.64 -1.2
816,640 + GFF828 0.77 -1.5
816,648 - GFF828 0.78 -1.3
816,733 + GFF828 0.86 -1.5
816,773 - -1.4
816,773 - -1.9
816,773 - -2.8
816,801 + -1.9
816,804 - -1.6

Or see this region's nucleotide sequence